-
1
-
-
0043197312
-
Phage as agents of lateral gene transfer
-
Canchaya C, Fournous G, Chibani-Chennoufi S, Dillmann ML, Brussow H, (2003) Phage as agents of lateral gene transfer. Curr Opin Microbiol 6: 417-424.
-
(2003)
Curr Opin Microbiol
, vol.6
, pp. 417-424
-
-
Canchaya, C.1
Fournous, G.2
Chibani-Chennoufi, S.3
Dillmann, M.L.4
Brussow, H.5
-
2
-
-
28544449319
-
The ins and outs of DNA transfer in bacteria
-
Chen I, Christie PJ, Dubnau D, (2005) The ins and outs of DNA transfer in bacteria. Science 310: 1456-1460.
-
(2005)
Science
, vol.310
, pp. 1456-1460
-
-
Chen, I.1
Christie, P.J.2
Dubnau, D.3
-
3
-
-
64349108725
-
The genetic transformation machinery: composition, localization, and mechanism
-
Claverys JP, Martin B, Polard P, (2009) The genetic transformation machinery: composition, localization, and mechanism. FEMS Microbiol Rev 33: 643-656.
-
(2009)
FEMS Microbiol Rev
, vol.33
, pp. 643-656
-
-
Claverys, J.P.1
Martin, B.2
Polard, P.3
-
5
-
-
0038192446
-
Horizontal acquisition of divergent chromosomal DNA in bacteria: effects of mutator phenotypes
-
Townsend JP, Nielsen KM, Fisher DS, Hartl DL, (2003) Horizontal acquisition of divergent chromosomal DNA in bacteria: effects of mutator phenotypes. Genetics 164: 13-21.
-
(2003)
Genetics
, vol.164
, pp. 13-21
-
-
Townsend, J.P.1
Nielsen, K.M.2
Fisher, D.S.3
Hartl, D.L.4
-
6
-
-
23944475626
-
Mechanisms of, and barriers to, horizontal gene transfer between bacteria
-
Thomas CM, Nielsen KM, (2005) Mechanisms of, and barriers to, horizontal gene transfer between bacteria. Nat Rev Microbiol 3: 711-721.
-
(2005)
Nat Rev Microbiol
, vol.3
, pp. 711-721
-
-
Thomas, C.M.1
Nielsen, K.M.2
-
7
-
-
77958580152
-
Structure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related species
-
Donati C, Hiller NL, Tettelin H, Muzzi A, Croucher NJ, et al. (2010) Structure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related species. Genome Biol 11: R107.
-
(2010)
Genome Biol
, vol.11
-
-
Donati, C.1
Hiller, N.L.2
Tettelin, H.3
Muzzi, A.4
Croucher, N.J.5
-
8
-
-
78149306108
-
Generation of genic diversity among Streptococcus pneumoniae strains via horizontal gene transfer during a chronic polyclonal pediatric infection
-
Hiller NL, Ahmed A, Powell E, Martin DP, Eutsey R, et al. (2010) Generation of genic diversity among Streptococcus pneumoniae strains via horizontal gene transfer during a chronic polyclonal pediatric infection. PLoS Pathog 6: e1001108.
-
(2010)
PLoS Pathog
, vol.6
-
-
Hiller, N.L.1
Ahmed, A.2
Powell, E.3
Martin, D.P.4
Eutsey, R.5
-
9
-
-
62649124308
-
Role of conjugative elements in the evolution of the multidrug-resistant pandemic clone Streptococcus pneumoniaeSpain23F ST81
-
Croucher NJ, Walker D, Romero P, Lennard N, Paterson GK, et al. (2009) Role of conjugative elements in the evolution of the multidrug-resistant pandemic clone Streptococcus pneumoniaeSpain23F ST81. J Bacteriol 191: 1480-1489.
-
(2009)
J Bacteriol
, vol.191
, pp. 1480-1489
-
-
Croucher, N.J.1
Walker, D.2
Romero, P.3
Lennard, N.4
Paterson, G.K.5
-
10
-
-
57349116172
-
Shaping a bacterial genome by large chromosomal replacements, the evolutionary history of Streptococcus agalactiae
-
Brochet M, Rusniok C, Couve E, Dramsi S, Poyart C, et al. (2008) Shaping a bacterial genome by large chromosomal replacements, the evolutionary history of Streptococcus agalactiae. Proc Natl Acad Sci U S A 105: 15961-15966.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 15961-15966
-
-
Brochet, M.1
Rusniok, C.2
Couve, E.3
Dramsi, S.4
Poyart, C.5
-
11
-
-
77952168929
-
Evolutionary dynamics of Clostridium difficile over short and long time scales
-
He M, Sebaihia M, Lawley TD, Stabler RA, Dawson LF, et al. (2010) Evolutionary dynamics of Clostridium difficile over short and long time scales. Proc Natl Acad Sci U S A 107: 7527-7532.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 7527-7532
-
-
He, M.1
Sebaihia, M.2
Lawley, T.D.3
Stabler, R.A.4
Dawson, L.F.5
-
12
-
-
75149126472
-
Genome sequence of a recently emerged, highly transmissible, multi-antibiotic- and antiseptic-resistant variant of methicillin-resistant Staphylococcus aureus, sequence type 239 (TW)
-
Holden MT, Lindsay JA, Corton C, Quail MA, Cockfield JD, et al. (2010) Genome sequence of a recently emerged, highly transmissible, multi-antibiotic- and antiseptic-resistant variant of methicillin-resistant Staphylococcus aureus, sequence type 239 (TW). J Bacteriol 192: 888-892.
-
(2010)
J Bacteriol
, vol.192
, pp. 888-892
-
-
Holden, M.T.1
Lindsay, J.A.2
Corton, C.3
Quail, M.A.4
Cockfield, J.D.5
-
13
-
-
0037223888
-
The evolutionary genomics of pathogen recombination
-
Awadalla P, (2003) The evolutionary genomics of pathogen recombination. Nat Rev Genet 4: 50-60.
-
(2003)
Nat Rev Genet
, vol.4
, pp. 50-60
-
-
Awadalla, P.1
-
14
-
-
0033551061
-
High recombination rate in natural populations of Plasmodium falciparum
-
Conway DJ, Roper C, Oduola AM, Arnot DE, Kremsner PG, et al. (1999) High recombination rate in natural populations of Plasmodium falciparum. Proc Natl Acad Sci U S A 96: 4506-4511.
-
(1999)
Proc Natl Acad Sci U S A
, vol.96
, pp. 4506-4511
-
-
Conway, D.J.1
Roper, C.2
Oduola, A.M.3
Arnot, D.E.4
Kremsner, P.G.5
-
15
-
-
79251573854
-
Inference of homologous recombination in bacteria using whole-genome sequences
-
Didelot X, Lawson D, Darling A, Falush D, (2010) Inference of homologous recombination in bacteria using whole-genome sequences. Genetics 186: 1435-1449.
-
(2010)
Genetics
, vol.186
, pp. 1435-1449
-
-
Didelot, X.1
Lawson, D.2
Darling, A.3
Falush, D.4
-
17
-
-
0031035812
-
A coalescent estimator of the population recombination rate
-
Hey J, Wakeley J, (1997) A coalescent estimator of the population recombination rate. Genetics 145: 833-846.
-
(1997)
Genetics
, vol.145
, pp. 833-846
-
-
Hey, J.1
Wakeley, J.2
-
18
-
-
0035692320
-
Two-locus sampling distributions and their application
-
Hudson RR, (2001) Two-locus sampling distributions and their application. Genetics 159: 1805-1817.
-
(2001)
Genetics
, vol.159
, pp. 1805-1817
-
-
Hudson, R.R.1
-
19
-
-
0030902601
-
The estimation of the number and the length distribution of gene conversion tracts from population DNA sequence data
-
Betran E, Rozas J, Navarro A, Barbadilla A, (1997) The estimation of the number and the length distribution of gene conversion tracts from population DNA sequence data. Genetics 146: 89-99.
-
(1997)
Genetics
, vol.146
, pp. 89-99
-
-
Betran, E.1
Rozas, J.2
Navarro, A.3
Barbadilla, A.4
-
20
-
-
0026708873
-
Analyzing the mosaic structure of genes
-
Smith JM, (1992) Analyzing the mosaic structure of genes. J Mol Evol 34: 126-129.
-
(1992)
J Mol Evol
, vol.34
, pp. 126-129
-
-
Smith, J.M.1
-
21
-
-
0035793056
-
Recombination within natural populations of pathogenic bacteria: short-term empirical estimates and long-term phylogenetic consequences
-
Feil EJ, Holmes EC, Bessen DE, Chan MS, Day NP, et al. (2001) Recombination within natural populations of pathogenic bacteria: short-term empirical estimates and long-term phylogenetic consequences. Proc Natl Acad Sci U S A 98: 182-187.
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, pp. 182-187
-
-
Feil, E.J.1
Holmes, E.C.2
Bessen, D.E.3
Chan, M.S.4
Day, N.P.5
-
23
-
-
63549098393
-
Accurate detection of recombinant breakpoints in whole-genome alignments
-
Westesson O, Holmes I, (2009) Accurate detection of recombinant breakpoints in whole-genome alignments. PLoS Comput Biol 5: e1000318.
-
(2009)
PLoS Comput Biol
, vol.5
-
-
Westesson, O.1
Holmes, I.2
-
24
-
-
0033824415
-
RDP: detection of recombination amongst aligned sequences
-
Martin D, Rybicki E, (2000) RDP: detection of recombination amongst aligned sequences. Bioinformatics 16: 562-563.
-
(2000)
Bioinformatics
, vol.16
, pp. 562-563
-
-
Martin, D.1
Rybicki, E.2
-
25
-
-
77957243284
-
RDP3: a flexible and fast computer program for analyzing recombination
-
Martin DP, Lemey P, Lott M, Moulton V, Posada D, et al. (2010) RDP3: a flexible and fast computer program for analyzing recombination. Bioinformatics 26: 2462-2463.
-
(2010)
Bioinformatics
, vol.26
, pp. 2462-2463
-
-
Martin, D.P.1
Lemey, P.2
Lott, M.3
Moulton, V.4
Posada, D.5
-
26
-
-
1342304133
-
eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data
-
Feil EJ, Li BC, Aanensen DM, Hanage WP, Spratt BG, (2004) eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data. J Bacteriol 186: 1518-1530.
-
(2004)
J Bacteriol
, vol.186
, pp. 1518-1530
-
-
Feil, E.J.1
Li, B.C.2
Aanensen, D.M.3
Hanage, W.P.4
Spratt, B.G.5
-
27
-
-
34547781750
-
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
-
Tamura K, Dudley J, Nei M, Kumar S, (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596-1599.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
28
-
-
3543051830
-
Mauve: multiple alignment of conserved genomic sequence with rearrangements
-
Darling AC, Mau B, Blattner FR, Perna NT, (2004) Mauve: multiple alignment of conserved genomic sequence with rearrangements. Genome Res 14: 1394-1403.
-
(2004)
Genome Res
, vol.14
, pp. 1394-1403
-
-
Darling, A.C.1
Mau, B.2
Blattner, F.R.3
Perna, N.T.4
-
29
-
-
0023989064
-
Improved tools for biological sequence comparison
-
Pearson WR, Lipman DJ, (1988) Improved tools for biological sequence comparison. Proc Natl Acad Sci U S A 85: 2444-2448.
-
(1988)
Proc Natl Acad Sci U S A
, vol.85
, pp. 2444-2448
-
-
Pearson, W.R.1
Lipman, D.J.2
-
31
-
-
15944370568
-
CGH-Explorer: a program for analysis of array-CGH data
-
Lingjaerde OC, Baumbusch LO, Liestol K, Glad IK, Borresen-Dale AL, (2005) CGH-Explorer: a program for analysis of array-CGH data. Bioinformatics 21: 821-822.
-
(2005)
Bioinformatics
, vol.21
, pp. 821-822
-
-
Lingjaerde, O.C.1
Baumbusch, L.O.2
Liestol, K.3
Glad, I.K.4
Borresen-Dale, A.L.5
-
32
-
-
1142286469
-
Evolution of Staphylococcus aureus by large chromosomal replacements
-
Robinson DA, Enright MC, (2004) Evolution of Staphylococcus aureus by large chromosomal replacements. J Bacteriol 186: 1060-1064.
-
(2004)
J Bacteriol
, vol.186
, pp. 1060-1064
-
-
Robinson, D.A.1
Enright, M.C.2
-
33
-
-
84858282256
-
Meticillin-resistant Staphylococcus aureus (MRSA): global epidemiology and harmonisation of typing methods
-
Stefani S, Chung DR, Lindsay JA, Friedrich AW, Kearns AM, et al. (2012) Meticillin-resistant Staphylococcus aureus (MRSA): global epidemiology and harmonisation of typing methods. Int J Antimicrob Agents 39: 273-282.
-
(2012)
Int J Antimicrob Agents
, vol.39
, pp. 273-282
-
-
Stefani, S.1
Chung, D.R.2
Lindsay, J.A.3
Friedrich, A.W.4
Kearns, A.M.5
-
34
-
-
0037025358
-
KpsF is the arabinose-5-phosphate isomerase required for 3-deoxy-D-manno-octulosonic acid biosynthesis and for both lipooligosaccharide assembly and capsular polysaccharide expression in Neisseria meningitidis
-
Tzeng YL, Datta A, Strole C, Kolli VS, Birck MR, et al. (2002) KpsF is the arabinose-5-phosphate isomerase required for 3-deoxy-D-manno-octulosonic acid biosynthesis and for both lipooligosaccharide assembly and capsular polysaccharide expression in Neisseria meningitidis. J Biol Chem 277: 24103-24113.
-
(2002)
J Biol Chem
, vol.277
, pp. 24103-24113
-
-
Tzeng, Y.L.1
Datta, A.2
Strole, C.3
Kolli, V.S.4
Birck, M.R.5
-
35
-
-
33746637557
-
Identification of a Candidate Streptococcus pneumoniae core genome and regions of diversity correlated with invasive pneumococcal disease
-
Obert C, Sublett J, Kaushal D, Hinojosa E, Barton T, et al. (2006) Identification of a Candidate Streptococcus pneumoniae core genome and regions of diversity correlated with invasive pneumococcal disease. Infect Immun 74: 4766-4777.
-
(2006)
Infect Immun
, vol.74
, pp. 4766-4777
-
-
Obert, C.1
Sublett, J.2
Kaushal, D.3
Hinojosa, E.4
Barton, T.5
-
36
-
-
0039217531
-
Molecular characterization of PcpA: a novel choline-binding protein of Streptococcus pneumoniae
-
Sanchez-Beato AR, Lopez R, Garcia JL, (1998) Molecular characterization of PcpA: a novel choline-binding protein of Streptococcus pneumoniae. FEMS Microbiol Lett 164: 207-214.
-
(1998)
FEMS Microbiol Lett
, vol.164
, pp. 207-214
-
-
Sanchez-Beato, A.R.1
Lopez, R.2
Garcia, J.L.3
-
37
-
-
35348910314
-
Crossing the barrier: evolution and spread of a major class of mosaic pbp2x in Streptococcus pneumoniae, S. mitis and S. oralis
-
Chi F, Nolte O, Bergmann C, Ip M, Hakenbeck R, (2007) Crossing the barrier: evolution and spread of a major class of mosaic pbp2x in Streptococcus pneumoniae, S. mitis and S. oralis. Int J Med Microbiol 297: 503-512.
-
(2007)
Int J Med Microbiol
, vol.297
, pp. 503-512
-
-
Chi, F.1
Nolte, O.2
Bergmann, C.3
Ip, M.4
Hakenbeck, R.5
-
38
-
-
55649099597
-
Antimicrobial drug resistance in Taiwan
-
Huang YT, Hsueh PR, (2008) Antimicrobial drug resistance in Taiwan. Int J Antimicrob Agents 32 Suppl 3: S174-178.
-
(2008)
Int J Antimicrob Agents
, vol.32
, Issue.SUPPL.
-
-
Huang, Y.T.1
Hsueh, P.R.2
-
39
-
-
49949099910
-
Evolution of Streptococcus pneumoniae and its close commensal relatives
-
Kilian M, Poulsen K, Blomqvist T, Havarstein LS, Bek-Thomsen M, et al. (2008) Evolution of Streptococcus pneumoniae and its close commensal relatives. PLoS ONE 3: e2683.
-
(2008)
PLoS ONE
, vol.3
-
-
Kilian, M.1
Poulsen, K.2
Blomqvist, T.3
Havarstein, L.S.4
Bek-Thomsen, M.5
-
40
-
-
37349048926
-
Evolution and pathogenesis of Staphylococcus aureus: lessons learned from genotyping and comparative genomics
-
Feng Y, Chen CJ, Su LH, Hu S, Yu J, et al. (2008) Evolution and pathogenesis of Staphylococcus aureus: lessons learned from genotyping and comparative genomics. FEMS Microbiol Rev 32: 23-37.
-
(2008)
FEMS Microbiol Rev
, vol.32
, pp. 23-37
-
-
Feng, Y.1
Chen, C.J.2
Su, L.H.3
Hu, S.4
Yu, J.5
-
41
-
-
67650087598
-
Genome sequencing of linezolid-resistant Streptococcus pneumoniae mutants reveals novel mechanisms of resistance
-
Feng J, Lupien A, Gingras H, Wasserscheid J, Dewar K, et al. (2009) Genome sequencing of linezolid-resistant Streptococcus pneumoniae mutants reveals novel mechanisms of resistance. Genome Res 19: 1214-1223.
-
(2009)
Genome Res
, vol.19
, pp. 1214-1223
-
-
Feng, J.1
Lupien, A.2
Gingras, H.3
Wasserscheid, J.4
Dewar, K.5
-
42
-
-
77950195231
-
Horizontal gene transfer in evolution: facts and challenges
-
Boto L, (2010) Horizontal gene transfer in evolution: facts and challenges. Proc Biol Sci 277: 819-827.
-
(2010)
Proc Biol Sci
, vol.277
, pp. 819-827
-
-
Boto, L.1
-
43
-
-
0038555738
-
Clonal relationships between invasive and carriage Streptococcus pneumoniae and serotype- and clone-specific differences in invasive disease potential
-
Brueggemann AB, Griffiths DT, Meats E, Peto T, Crook DW, et al. (2003) Clonal relationships between invasive and carriage Streptococcus pneumoniae and serotype- and clone-specific differences in invasive disease potential. J Infect Dis 187: 1424-1432.
-
(2003)
J Infect Dis
, vol.187
, pp. 1424-1432
-
-
Brueggemann, A.B.1
Griffiths, D.T.2
Meats, E.3
Peto, T.4
Crook, D.W.5
-
44
-
-
33846625056
-
Recombination and the nature of bacterial speciation
-
Fraser C, Hanage WP, Spratt BG, (2007) Recombination and the nature of bacterial speciation. Science 315: 476-480.
-
(2007)
Science
, vol.315
, pp. 476-480
-
-
Fraser, C.1
Hanage, W.P.2
Spratt, B.G.3
-
45
-
-
67149119196
-
Hyper-recombination, diversity, and antibiotic resistance in pneumococcus
-
Hanage WP, Fraser C, Tang J, Connor TR, Corander J, (2009) Hyper-recombination, diversity, and antibiotic resistance in pneumococcus. Science 324: 1454-1457.
-
(2009)
Science
, vol.324
, pp. 1454-1457
-
-
Hanage, W.P.1
Fraser, C.2
Tang, J.3
Connor, T.R.4
Corander, J.5
|