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Volumn 8, Issue 9, 2012, Pages

Tethering of the Conserved piggyBac Transposase Fusion Protein CSB-PGBD3 to Chromosomal AP-1 Proteins Regulates Expression of Nearby Genes in Humans

Author keywords

[No Author keywords available]

Indexed keywords

CSB PGBD3 FUSION PROTEIN; CSB PROTEIN; HYBRID PROTEIN; PROTEIN; RNA POLYMERASE II; STRESS ACTIVATED PROTEIN KINASE; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR AP 1; TRANSCRIPTION FACTOR CTCF; TRANSCRIPTOME; TRANSPOSASE; UNCLASSIFIED DRUG;

EID: 84866923507     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1002972     Document Type: Article
Times cited : (24)

References (81)
  • 1
    • 75149163382 scopus 로고    scopus 로고
    • Mutation update for the CSB/ERCC6 and CSA/ERCC8 genes involved in Cockayne syndrome
    • Laugel V, Dalloz C, Durand M, Sauvanaud F, Kristensen U, et al. (2010) Mutation update for the CSB/ERCC6 and CSA/ERCC8 genes involved in Cockayne syndrome. Hum Mutat 31: 113-126 doi:10.1002/humu.21154.
    • (2010) Hum Mutat , vol.31 , pp. 113-126
    • Laugel, V.1    Dalloz, C.2    Durand, M.3    Sauvanaud, F.4    Kristensen, U.5
  • 2
    • 0030667078 scopus 로고    scopus 로고
    • Recruitment of the putative transcription-repair coupling factor CSB/ERCC6 to RNA polymerase II elongation complexes
    • Tantin D, Kansal A, Carey M, (1997) Recruitment of the putative transcription-repair coupling factor CSB/ERCC6 to RNA polymerase II elongation complexes. Mol Cell Biol 17: 6803-6814.
    • (1997) Mol Cell Biol , vol.17 , pp. 6803-6814
    • Tantin, D.1    Kansal, A.2    Carey, M.3
  • 3
    • 3142739449 scopus 로고    scopus 로고
    • DNA damage stabilizes interaction of CSB with the transcription elongation machinery
    • van den Boom V, Citterio E, Hoogstraten D, Zotter A, Egly J-M, et al. (2004) DNA damage stabilizes interaction of CSB with the transcription elongation machinery. J Cell Biol 166: 27-36 doi:10.1083/jcb.200401056.
    • (2004) J Cell Biol , vol.166 , pp. 27-36
    • van den Boom, V.1    Citterio, E.2    Hoogstraten, D.3    Zotter, A.4    Egly, J.-M.5
  • 4
    • 0030826732 scopus 로고    scopus 로고
    • The Cockayne syndrome B protein, involved in transcription-coupled DNA repair, resides in an RNA polymerase II-containing complex
    • van Gool AJ, Citterio E, Rademakers S, van Os R, Vermeulen W, et al. (1997) The Cockayne syndrome B protein, involved in transcription-coupled DNA repair, resides in an RNA polymerase II-containing complex. EMBO J 16: 5955-5965 doi:10.1093/emboj/16.19.5955.
    • (1997) EMBO J , vol.16 , pp. 5955-5965
    • van Gool, A.J.1    Citterio, E.2    Rademakers, S.3    van Os, R.4    Vermeulen, W.5
  • 6
    • 77953091336 scopus 로고    scopus 로고
    • A ubiquitin-binding domain in Cockayne syndrome B required for transcription-coupled nucleotide excision repair
    • Anindya R, Mari P-O, Kristensen U, Kool H, Giglia-Mari G, et al. (2010) A ubiquitin-binding domain in Cockayne syndrome B required for transcription-coupled nucleotide excision repair. Mol Cell 38: 637-648 doi:10.1016/j.molcel.2010.04.017.
    • (2010) Mol Cell , vol.38 , pp. 637-648
    • Anindya, R.1    Mari, P.-O.2    Kristensen, U.3    Kool, H.4    Giglia-Mari, G.5
  • 7
    • 77953096467 scopus 로고    scopus 로고
    • Ubiquitin recognition by the Cockayne syndrome group B protein: binding will set you free
    • Gray LT, Weiner AM, (2010) Ubiquitin recognition by the Cockayne syndrome group B protein: binding will set you free. Mol Cell 38: 621-622 doi:10.1016/j.molcel.2010.05.025.
    • (2010) Mol Cell , vol.38 , pp. 621-622
    • Gray, L.T.1    Weiner, A.M.2
  • 8
    • 34547743163 scopus 로고    scopus 로고
    • Activation of RNA polymerase I transcription by cockayne syndrome group B protein and histone methyltransferase G9a
    • Yuan X, Feng W, Imhof A, Grummt I, Zhou Y, (2007) Activation of RNA polymerase I transcription by cockayne syndrome group B protein and histone methyltransferase G9a. Mol Cell 27: 585-595 doi:10.1016/j.molcel.2007.06.021.
    • (2007) Mol Cell , vol.27 , pp. 585-595
    • Yuan, X.1    Feng, W.2    Imhof, A.3    Grummt, I.4    Zhou, Y.5
  • 9
    • 33745460647 scopus 로고    scopus 로고
    • Cockayne syndrome group B protein (CSB) plays a general role in chromatin maintenance and remodeling
    • Newman JC, Bailey AD, Weiner AM, (2006) Cockayne syndrome group B protein (CSB) plays a general role in chromatin maintenance and remodeling. Proc Natl Acad Sci USA 103: 9613-9618 doi:10.1073/pnas.0510909103.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 9613-9618
    • Newman, J.C.1    Bailey, A.D.2    Weiner, A.M.3
  • 10
    • 41949120418 scopus 로고    scopus 로고
    • An abundant evolutionarily conserved CSB-PiggyBac fusion protein expressed in Cockayne syndrome
    • Newman JC, Bailey AD, Fan H-Y, Pavelitz T, Weiner AM, (2008) An abundant evolutionarily conserved CSB-PiggyBac fusion protein expressed in Cockayne syndrome. PLoS Genet 4: e1000031 doi:10.1371/journal.pgen.1000031.
    • (2008) PLoS Genet , vol.4
    • Newman, J.C.1    Bailey, A.D.2    Fan, H.-Y.3    Pavelitz, T.4    Weiner, A.M.5
  • 11
    • 0344614604 scopus 로고    scopus 로고
    • The ATPase domain but not the acidic region of Cockayne syndrome group B gene product is essential for DNA repair
    • Brosh RM, Balajee AS, Selzer RR, Sunesen M, Proietti De Santis L, et al. (1999) The ATPase domain but not the acidic region of Cockayne syndrome group B gene product is essential for DNA repair. Mol Biol Cell 10: 3583-3594.
    • (1999) Mol Biol Cell , vol.10 , pp. 3583-3594
    • Brosh, R.M.1    Balajee, A.S.2    Selzer, R.R.3    Sunesen, M.4    Proietti de Santis, L.5
  • 12
    • 0034663737 scopus 로고    scopus 로고
    • Molecular characterization of an acidic region deletion mutant of Cockayne syndrome group B protein
    • Sunesen M, Selzer RR, Brosh RM, Balajee AS, Stevnsner T, et al. (2000) Molecular characterization of an acidic region deletion mutant of Cockayne syndrome group B protein. Nucleic Acids Research 28: 3151-3159.
    • (2000) Nucleic Acids Research , vol.28 , pp. 3151-3159
    • Sunesen, M.1    Selzer, R.R.2    Brosh, R.M.3    Balajee, A.S.4    Stevnsner, T.5
  • 13
    • 74749084156 scopus 로고    scopus 로고
    • UV-induced association of the CSB remodeling protein with chromatin requires ATP-dependent relief of N-terminal autorepression
    • Lake RJ, Geyko A, Hemashettar G, Zhao Y, Fan H-Y, (2010) UV-induced association of the CSB remodeling protein with chromatin requires ATP-dependent relief of N-terminal autorepression. Mol Cell 37: 235-246 doi:10.1016/j.molcel.2009.10.027.
    • (2010) Mol Cell , vol.37 , pp. 235-246
    • Lake, R.J.1    Geyko, A.2    Hemashettar, G.3    Zhao, Y.4    Fan, H.-Y.5
  • 14
    • 50049131790 scopus 로고    scopus 로고
    • Truncated Cockayne syndrome B protein represses elongation by RNA polymerase I
    • Lebedev A, Scharffetter-Kochanek K, Iben S, (2008) Truncated Cockayne syndrome B protein represses elongation by RNA polymerase I. J Mol Biol 382: 266-274 doi:10.1016/j.jmb.2008.07.018.
    • (2008) J Mol Biol , vol.382 , pp. 266-274
    • Lebedev, A.1    Scharffetter-Kochanek, K.2    Iben, S.3
  • 15
    • 78650640724 scopus 로고    scopus 로고
    • Mutant Cockayne syndrome group B protein inhibits repair of DNA topoisomerase I-DNA covalent complex
    • Horibata K, Saijo M, Bay MN, Lan L, Kuraoka I, et al. (2011) Mutant Cockayne syndrome group B protein inhibits repair of DNA topoisomerase I-DNA covalent complex. Genes Cells 16: 101-114 doi:10.1111/j.1365-2443.2010.01467.x.
    • (2011) Genes Cells , vol.16 , pp. 101-114
    • Horibata, K.1    Saijo, M.2    Bay, M.N.3    Lan, L.4    Kuraoka, I.5
  • 16
    • 84860235841 scopus 로고    scopus 로고
    • The conserved Cockayne syndrome B-piggyBac fusion protein (CSB-PGBD3) affects DNA repair and induces both interferon-like and innate antiviral responses in CSB-null cells
    • Bailey AD, Gray LT, Pavelitz T, Newman JC, Horibata K, et al. (2012) The conserved Cockayne syndrome B-piggyBac fusion protein (CSB-PGBD3) affects DNA repair and induces both interferon-like and innate antiviral responses in CSB-null cells. DNA Repair (Amst) doi:10.1016/j.dnarep.2012.02.004.
    • (2012) DNA Repair (Amst)
    • Bailey, A.D.1    Gray, L.T.2    Pavelitz, T.3    Newman, J.C.4    Horibata, K.5
  • 17
    • 84860149944 scopus 로고    scopus 로고
    • IKK contributes to UVB-induced VEGF expression by regulating AP-1 transactivation
    • Dong W, Li Y, Gao M, Hu M, Li X, et al. (2011) IKK contributes to UVB-induced VEGF expression by regulating AP-1 transactivation. Nucleic Acids Research doi:10.1093/nar/gkr1216.
    • (2011) Nucleic Acids Research
    • Dong, W.1    Li, Y.2    Gao, M.3    Hu, M.4    Li, X.5
  • 18
    • 78349311316 scopus 로고    scopus 로고
    • Transcription factor Ap-1 mediates proangiogenic MIF expression in human endothelial cells exposed to Angiotensin II
    • Shan Z-X, Lin Q-X, Yang M, Zhang Bin, Zhu J-N, et al. (2011) Transcription factor Ap-1 mediates proangiogenic MIF expression in human endothelial cells exposed to Angiotensin II. Cytokine 53: 35-41 doi:10.1016/j.cyto.2010.09.009.
    • (2011) Cytokine , vol.53 , pp. 35-41
    • Shan, Z.-X.1    Lin, Q.-X.2    Yang, M.3    Zhang, B.4    Zhu, J.-N.5
  • 19
    • 47049129276 scopus 로고    scopus 로고
    • Activator protein 1 (Fos/Jun) functions in inflammatory bone and skin disease
    • Zenz R, Eferl R, Scheinecker C, Redlich K, Smolen J, et al. (2008) Activator protein 1 (Fos/Jun) functions in inflammatory bone and skin disease. Arthritis Res Ther 10: 201 doi:10.1186/ar2338.
    • (2008) Arthritis Res Ther , vol.10 , pp. 201
    • Zenz, R.1    Eferl, R.2    Scheinecker, C.3    Redlich, K.4    Smolen, J.5
  • 20
    • 0032572723 scopus 로고    scopus 로고
    • Smad3 and Smad4 cooperate with c-Jun/c-Fos to mediate TGF-beta-induced transcription
    • Zhang Y, Feng XH, Derynck R, (1998) Smad3 and Smad4 cooperate with c-Jun/c-Fos to mediate TGF-beta-induced transcription. Nature 394: 909-913 doi:10.1038/29814.
    • (1998) Nature , vol.394 , pp. 909-913
    • Zhang, Y.1    Feng, X.H.2    Derynck, R.3
  • 22
    • 0024449118 scopus 로고
    • Transposon mutagenesis of baculoviruses: analysis of Trichoplusia ni transposon IFP2 insertions within the FP-locus of nuclear polyhedrosis viruses
    • Cary LC, Goebel M, Corsaro BG, Wang HG, Rosen E, et al. (1989) Transposon mutagenesis of baculoviruses: analysis of Trichoplusia ni transposon IFP2 insertions within the FP-locus of nuclear polyhedrosis viruses. Virology 172: 156-169.
    • (1989) Virology , vol.172 , pp. 156-169
    • Cary, L.C.1    Goebel, M.2    Corsaro, B.G.3    Wang, H.G.4    Rosen, E.5
  • 23
    • 0034790136 scopus 로고    scopus 로고
    • The minimum internal and external sequence requirements for transposition of the eukaryotic transformation vector piggyBac
    • Li X, Lobo N, Bauser CA, Fraser MJ, (2001) The minimum internal and external sequence requirements for transposition of the eukaryotic transformation vector piggyBac. Mol Genet Genomics 266: 190-198.
    • (2001) Mol Genet Genomics , vol.266 , pp. 190-198
    • Li, X.1    Lobo, N.2    Bauser, C.A.3    Fraser, M.J.4
  • 24
    • 79952138028 scopus 로고    scopus 로고
    • A hyperactive piggyBac transposase for mammalian applications
    • Yusa K, Zhou L, Li MA, Bradley A, Craig NL, (2011) A hyperactive piggyBac transposase for mammalian applications. Proc Natl Acad Sci USA 108: 1531-1536 doi:10.1073/pnas.1008322108.
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 1531-1536
    • Yusa, K.1    Zhou, L.2    Li, M.A.3    Bradley, A.4    Craig, N.L.5
  • 25
    • 84866895752 scopus 로고    scopus 로고
    • Identification of basepairs within Tn5 termini that are critical for H-NS binding to the transpososome and regulation of Tn5 transposition
    • Whitfield CR, Shilton BH, Haniford DB, (2012) Identification of basepairs within Tn5 termini that are critical for H-NS binding to the transpososome and regulation of Tn5 transposition. Mob DNA 3: 7 doi:10.1186/1759-8753-3-7.
    • (2012) Mob DNA , vol.3 , pp. 7
    • Whitfield, C.R.1    Shilton, B.H.2    Haniford, D.B.3
  • 26
    • 7444226812 scopus 로고    scopus 로고
    • Complete absence of Cockayne syndrome group B gene product gives rise to UV-sensitive syndrome but not Cockayne syndrome
    • Horibata K, Iwamoto Y, Kuraoka I, Jaspers NGJ, Kurimasa A, et al. (2004) Complete absence of Cockayne syndrome group B gene product gives rise to UV-sensitive syndrome but not Cockayne syndrome. Proc Natl Acad Sci USA 101: 15410-15415 doi:10.1073/pnas.0404587101.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 15410-15415
    • Horibata, K.1    Iwamoto, Y.2    Kuraoka, I.3    Jaspers, N.G.J.4    Kurimasa, A.5
  • 27
    • 55549089660 scopus 로고    scopus 로고
    • Accurate whole human genome sequencing using reversible terminator chemistry
    • Bentley DR, Balasubramanian S, Swerdlow HP, Smith GP, Milton J, et al. (2008) Accurate whole human genome sequencing using reversible terminator chemistry. Nature 456: 53-59 doi:10.1038/nature07517.
    • (2008) Nature , vol.456 , pp. 53-59
    • Bentley, D.R.1    Balasubramanian, S.2    Swerdlow, H.P.3    Smith, G.P.4    Milton, J.5
  • 28
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead B, Trapnell C, Pop M, Salzberg SL, (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25 doi:10.1186/gb-2009-10-3-r25.
    • (2009) Genome Biol , vol.10
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 30
    • 34250159524 scopus 로고    scopus 로고
    • Genome-Wide Mapping of in Vivo Protein-DNA Interactions
    • Johnson DS, Mortazavi A, Myers RM, Wold B, (2007) Genome-Wide Mapping of in Vivo Protein-DNA Interactions. Science 316: 1497-1502 doi:10.1126/science.1141319.
    • (2007) Science , vol.316 , pp. 1497-1502
    • Johnson, D.S.1    Mortazavi, A.2    Myers, R.M.3    Wold, B.4
  • 31
    • 50849090969 scopus 로고    scopus 로고
    • Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data
    • Valouev A, Johnson DS, Sundquist A, Medina C, Anton E, et al. (2008) Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data. Nat Methods 5: 829-834 doi:10.1038/nmeth.1246.
    • (2008) Nat Methods , vol.5 , pp. 829-834
    • Valouev, A.1    Johnson, D.S.2    Sundquist, A.3    Medina, C.4    Anton, E.5
  • 32
    • 70449711243 scopus 로고    scopus 로고
    • Computation for ChIP-seq and RNA-seq studies
    • Pepke S, Wold B, Mortazavi A, (2009) Computation for ChIP-seq and RNA-seq studies. Nat Methods 6: S22-S32 doi:10.1038/nmeth.1371.
    • (2009) Nat Methods , vol.6
    • Pepke, S.1    Wold, B.2    Mortazavi, A.3
  • 33
    • 70349871718 scopus 로고    scopus 로고
    • CEAS: cis-regulatory element annotation system
    • Shin H, Liu T, Manrai AK, Liu XS, (2009) CEAS: cis-regulatory element annotation system. Bioinformatics 25: 2605-2606 doi:10.1093/bioinformatics/btp479.
    • (2009) Bioinformatics , vol.25 , pp. 2605-2606
    • Shin, H.1    Liu, T.2    Manrai, A.K.3    Liu, X.S.4
  • 34
    • 0028685490 scopus 로고
    • Fitting a mixture model by expectation maximization to discover motifs in biopolymers
    • Bailey TL, Elkan C, (1994) Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc Int Conf Intell Syst Mol Biol 2: 28-36.
    • (1994) Proc Int Conf Intell Syst Mol Biol , vol.2 , pp. 28-36
    • Bailey, T.L.1    Elkan, C.2
  • 36
    • 0242691046 scopus 로고    scopus 로고
    • AP-1: a double-edged sword in tumorigenesis
    • Eferl R, Wagner EF, (2003) AP-1: a double-edged sword in tumorigenesis. Nat Rev Cancer 3: 859-868 doi:10.1038/nrc1209.
    • (2003) Nat Rev Cancer , vol.3 , pp. 859-868
    • Eferl, R.1    Wagner, E.F.2
  • 37
    • 67549119096 scopus 로고    scopus 로고
    • CTCF: master weaver of the genome
    • Phillips JE, Corces VG, (2009) CTCF: master weaver of the genome. Cell 137: 1194-1211 doi:10.1016/j.cell.2009.06.001.
    • (2009) Cell , vol.137 , pp. 1194-1211
    • Phillips, J.E.1    Corces, V.G.2
  • 38
    • 28544434439 scopus 로고    scopus 로고
    • Fos/AP-1 proteins in bone and the immune system
    • Wagner EF, Eferl R, (2005) Fos/AP-1 proteins in bone and the immune system. Immunol Rev 208: 126-140 doi:10.1111/j.0105-2896.2005.00332.x.
    • (2005) Immunol Rev , vol.208 , pp. 126-140
    • Wagner, E.F.1    Eferl, R.2
  • 39
    • 0035971433 scopus 로고    scopus 로고
    • Close encounters of many kinds: Fos-Jun interactions that mediate transcription regulatory specificity
    • Chinenov Y, Kerppola TK, (2001) Close encounters of many kinds: Fos-Jun interactions that mediate transcription regulatory specificity. Oncogene 20: 2438-2452 doi:10.1038/sj.onc.1204385.
    • (2001) Oncogene , vol.20 , pp. 2438-2452
    • Chinenov, Y.1    Kerppola, T.K.2
  • 40
    • 0031039206 scopus 로고    scopus 로고
    • Variations in Jun and Fos protein expression and AP-1 activity in cycling, resting and stimulated fibroblasts
    • Lallemand D, Spyrou G, Yaniv M, Pfarr CM, (1997) Variations in Jun and Fos protein expression and AP-1 activity in cycling, resting and stimulated fibroblasts. Oncogene 14: 819-830 doi:10.1038/sj.onc.1200901.
    • (1997) Oncogene , vol.14 , pp. 819-830
    • Lallemand, D.1    Spyrou, G.2    Yaniv, M.3    Pfarr, C.M.4
  • 41
    • 77952214662 scopus 로고    scopus 로고
    • GREAT improves functional interpretation of cis-regulatory regions
    • McLean CY, Bristor D, Hiller M, Clarke SL, Schaar BT, et al. (2010) GREAT improves functional interpretation of cis-regulatory regions. Nat Biotechnol 28: 495-501 doi:10.1038/nbt.1630.
    • (2010) Nat Biotechnol , vol.28 , pp. 495-501
    • McLean, C.Y.1    Bristor, D.2    Hiller, M.3    Clarke, S.L.4    Schaar, B.T.5
  • 42
    • 84866886917 scopus 로고    scopus 로고
    • A direct approach to false discovery rates - Storey - 2002 - Journal of the Royal Statistical Society: Series B (Statistical Methodology) - Wiley Online Library
    • Storey J, (2002) A direct approach to false discovery rates- Storey- 2002- Journal of the Royal Statistical Society: Series B (Statistical Methodology)- Wiley Online Library. Journal of the Royal Statistical Society Series B.
    • (2002) Journal of the Royal Statistical Society Series B
    • Storey, J.1
  • 43
    • 34147105638 scopus 로고    scopus 로고
    • The evolutionary history of human DNA transposons: evidence for intense activity in the primate lineage
    • Pace JK, Feschotte C, (2007) The evolutionary history of human DNA transposons: evidence for intense activity in the primate lineage. Genome Res 17: 422-432 doi:10.1101/gr.5826307.
    • (2007) Genome Res , vol.17 , pp. 422-432
    • Pace, J.K.1    Feschotte, C.2
  • 44
    • 41949108098 scopus 로고    scopus 로고
    • piggyBac can bypass DNA synthesis during cut and paste transposition
    • Mitra R, Fain-Thornton J, Craig NL, (2008) piggyBac can bypass DNA synthesis during cut and paste transposition. EMBO J 27: 1097-1109 doi:10.1038/emboj.2008.41.
    • (2008) EMBO J , vol.27 , pp. 1097-1109
    • Mitra, R.1    Fain-Thornton, J.2    Craig, N.L.3
  • 46
    • 0347755531 scopus 로고    scopus 로고
    • The UCSC Table Browser data retrieval tool
    • 493D-4496
    • Karolchik D, (2004) The UCSC Table Browser data retrieval tool. Nucleic Acids Research 32: 493D-496 doi:10.1093/nar/gkh103.
    • (2004) Nucleic Acids Research , vol.32
    • Karolchik, D.1
  • 47
    • 15244346915 scopus 로고    scopus 로고
    • Swapping function of two chromatin remodeling complexes
    • Fan H-Y, Trotter KW, Archer TK, Kingston RE, (2005) Swapping function of two chromatin remodeling complexes. Mol Cell 17: 805-815 doi:10.1016/j.molcel.2005.02.024.
    • (2005) Mol Cell , vol.17 , pp. 805-815
    • Fan, H.-Y.1    Trotter, K.W.2    Archer, T.K.3    Kingston, R.E.4
  • 48
    • 80051935853 scopus 로고    scopus 로고
    • Genome-wide binding site analysis of FAR-RED ELONGATED HYPOCOTYL3 reveals its novel function in Arabidopsis development
    • Ouyang X, Li J, Li G, Li B, Chen B, et al. (2011) Genome-wide binding site analysis of FAR-RED ELONGATED HYPOCOTYL3 reveals its novel function in Arabidopsis development. Plant Cell 23: 2514-2535 doi:10.1105/tpc.111.085126.
    • (2011) Plant Cell , vol.23 , pp. 2514-2535
    • Ouyang, X.1    Li, J.2    Li, G.3    Li, B.4    Chen, B.5
  • 49
    • 80055010534 scopus 로고    scopus 로고
    • Transposon-mediated rewiring of gene regulatory networks contributed to the evolution of pregnancy in mammals
    • Lynch VJ, Leclerc RD, May G, Wagner GP, (2011) Transposon-mediated rewiring of gene regulatory networks contributed to the evolution of pregnancy in mammals. Nat Genet 43: 1154-1159 doi:10.1038/ng.917.
    • (2011) Nat Genet , vol.43 , pp. 1154-1159
    • Lynch, V.J.1    Leclerc, R.D.2    May, G.3    Wagner, G.P.4
  • 50
    • 84863393570 scopus 로고    scopus 로고
    • Waves of retrotransposon expansion remodel genome organization and CTCF binding in multiple mammalian lineages
    • Schmidt D, Schwalie PC, Wilson MD, Ballester B, Gonçalves A, et al. (2012) Waves of retrotransposon expansion remodel genome organization and CTCF binding in multiple mammalian lineages. Cell 148: 335-348 doi:10.1016/j.cell.2011.11.058.
    • (2012) Cell , vol.148 , pp. 335-348
    • Schmidt, D.1    Schwalie, P.C.2    Wilson, M.D.3    Ballester, B.4    Gonçalves, A.5
  • 51
    • 80053408723 scopus 로고    scopus 로고
    • Reciprocally regulated chromatin association of the Cockayne syndrome protein B and p53
    • Lake RJ, Basheer A, Fan H-Y, (2011) Reciprocally regulated chromatin association of the Cockayne syndrome protein B and p53. J Biol Chem doi:10.1074/jbc.M111.252643.
    • (2011) J Biol Chem
    • Lake, R.J.1    Basheer, A.2    Fan, H.-Y.3
  • 52
    • 0028329953 scopus 로고
    • JNK1: a protein kinase stimulated by UV light and Ha-Ras that binds and phosphorylates the c-Jun activation domain
    • Dérijard B, Hibi M, Wu IH, Barrett T, Su B, et al. (1994) JNK1: a protein kinase stimulated by UV light and Ha-Ras that binds and phosphorylates the c-Jun activation domain. Cell 76: 1025-1037.
    • (1994) Cell , vol.76 , pp. 1025-1037
    • Dérijard, B.1    Hibi, M.2    Wu, I.H.3    Barrett, T.4    Su, B.5
  • 53
    • 67349226757 scopus 로고    scopus 로고
    • c-Jun N-terminal kinase regulates apoptosis in endometrial cancer cells
    • Reno EM, Haughian JM, Jackson TA, Thorne AM, Bradford AP, (2009) c-Jun N-terminal kinase regulates apoptosis in endometrial cancer cells. Apoptosis 14: 809-820 doi:10.1007/s10495-009-0354-6.
    • (2009) Apoptosis , vol.14 , pp. 809-820
    • Reno, E.M.1    Haughian, J.M.2    Jackson, T.A.3    Thorne, A.M.4    Bradford, A.P.5
  • 54
    • 79952266577 scopus 로고    scopus 로고
    • Global impact of RNA polymerase II elongation inhibition on alternative splicing regulation
    • Ip JY, Schmidt D, Pan Q, Ramani AK, Fraser AG, et al. (2011) Global impact of RNA polymerase II elongation inhibition on alternative splicing regulation. Genome Res 21: 390-401 doi:10.1101/gr.111070.110.
    • (2011) Genome Res , vol.21 , pp. 390-401
    • Ip, J.Y.1    Schmidt, D.2    Pan, Q.3    Ramani, A.K.4    Fraser, A.G.5
  • 55
    • 55149088835 scopus 로고    scopus 로고
    • The human set and transposase domain protein Metnase interacts with DNA Ligase IV and enhances the efficiency and accuracy of non-homologous end-joining
    • Hromas R, Wray J, Lee S-H, Martinez L, Farrington J, et al. (2008) The human set and transposase domain protein Metnase interacts with DNA Ligase IV and enhances the efficiency and accuracy of non-homologous end-joining. DNA Repair (Amst) 7: 1927-1937 doi:10.1016/j.dnarep.2008.08.002.
    • (2008) DNA Repair (Amst) , vol.7 , pp. 1927-1937
    • Hromas, R.1    Wray, J.2    Lee, S.-H.3    Martinez, L.4    Farrington, J.5
  • 56
    • 77957133468 scopus 로고    scopus 로고
    • Metnase promotes restart and repair of stalled and collapsed replication forks
    • De Haro LP, Wray J, Williamson EA, Durant ST, Corwin L, et al. (2010) Metnase promotes restart and repair of stalled and collapsed replication forks. Nucleic Acids Research 38: 5681-5691 doi:10.1093/nar/gkq339.
    • (2010) Nucleic Acids Research , vol.38 , pp. 5681-5691
    • de Haro, L.P.1    Wray, J.2    Williamson, E.A.3    Durant, S.T.4    Corwin, L.5
  • 57
    • 33846627783 scopus 로고    scopus 로고
    • The human SETMAR protein preserves most of the activities of the ancestral Hsmar1 transposase
    • Liu D, Bischerour J, Siddique A, Buisine N, Bigot Y, et al. (2007) The human SETMAR protein preserves most of the activities of the ancestral Hsmar1 transposase. Mol Cell Biol 27: 1125-1132 doi:10.1128/MCB.01899-06.
    • (2007) Mol Cell Biol , vol.27 , pp. 1125-1132
    • Liu, D.1    Bischerour, J.2    Siddique, A.3    Buisine, N.4    Bigot, Y.5
  • 58
    • 77953540849 scopus 로고    scopus 로고
    • Regulation of Metnase's TIR binding activity by its binding partner, Pso4
    • Beck BD, Lee SS, Hromas R, Lee S-H, (2010) Regulation of Metnase's TIR binding activity by its binding partner, Pso4. Arch Biochem Biophys 498: 89-94 doi:10.1016/j.abb.2010.04.011.
    • (2010) Arch Biochem Biophys , vol.498 , pp. 89-94
    • Beck, B.D.1    Lee, S.S.2    Hromas, R.3    Lee, S.-H.4
  • 59
    • 44049085607 scopus 로고    scopus 로고
    • Human Pso4 is a metnase (SETMAR)-binding partner that regulates metnase function in DNA repair
    • Beck BD, Park S-J, Lee Y-J, Roman Y, Hromas RA, et al. (2008) Human Pso4 is a metnase (SETMAR)-binding partner that regulates metnase function in DNA repair. J Biol Chem 283: 9023-9030 doi:10.1074/jbc.M800150200.
    • (2008) J Biol Chem , vol.283 , pp. 9023-9030
    • Beck, B.D.1    Park, S.-J.2    Lee, Y.-J.3    Roman, Y.4    Hromas, R.A.5
  • 60
    • 0026465665 scopus 로고
    • ERCC6, a member of a subfamily of putative helicases, is involved in Cockayne's syndrome and preferential repair of active genes
    • Troelstra C, van Gool A, de Wit J, Vermeulen W, Bootsma D, et al. (1992) ERCC6, a member of a subfamily of putative helicases, is involved in Cockayne's syndrome and preferential repair of active genes. Cell 71: 939-953.
    • (1992) Cell , vol.71 , pp. 939-953
    • Troelstra, C.1    van Gool, A.2    de Wit, J.3    Vermeulen, W.4    Bootsma, D.5
  • 61
    • 84861225167 scopus 로고    scopus 로고
    • Chitooligosaccharide elicits acute inflammatory cytokine response through AP-1 pathway in human intestinal epithelial-like (Caco-2) cells
    • Bahar B, O'Doherty JV, Maher S, McMorrow J, Sweeney T, (2012) Chitooligosaccharide elicits acute inflammatory cytokine response through AP-1 pathway in human intestinal epithelial-like (Caco-2) cells. Molecular Immunology pp. 1-9 doi:10.1016/j.molimm.2012.03.027.
    • (2012) Molecular Immunology , pp. 1-9
    • Bahar, B.1    O'Doherty, J.V.2    Maher, S.3    McMorrow, J.4    Sweeney, T.5
  • 63
    • 70350125106 scopus 로고    scopus 로고
    • Cell surface-bound IL-1alpha is an upstream regulator of the senescence-associated IL-6/IL-8 cytokine network
    • Orjalo AV, Bhaumik D, Gengler BK, Scott GK, Campisi J, (2009) Cell surface-bound IL-1alpha is an upstream regulator of the senescence-associated IL-6/IL-8 cytokine network. Proc Natl Acad Sci USA 106: 17031-17036 doi:10.1073/pnas.0905299106.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 17031-17036
    • Orjalo, A.V.1    Bhaumik, D.2    Gengler, B.K.3    Scott, G.K.4    Campisi, J.5
  • 65
    • 69949098944 scopus 로고    scopus 로고
    • Neuropathology of Cockayne syndrome: Evidence for impaired development, premature aging, and neurodegeneration
    • Weidenheim KM, Dickson DW, Rapin I, (2009) Neuropathology of Cockayne syndrome: Evidence for impaired development, premature aging, and neurodegeneration. Mech Ageing Dev 130: 619-636 doi:10.1016/j.mad.2009.07.006.
    • (2009) Mech Ageing Dev , vol.130 , pp. 619-636
    • Weidenheim, K.M.1    Dickson, D.W.2    Rapin, I.3
  • 66
    • 43849107357 scopus 로고    scopus 로고
    • Do all of the neurologic diseases in patients with DNA repair gene mutations result from the accumulation of DNA damage?
    • Brooks PJ, Cheng T-F, Cooper L, (2008) Do all of the neurologic diseases in patients with DNA repair gene mutations result from the accumulation of DNA damage? DNA Repair (Amst) 7: 834-848 doi:10.1016/j.dnarep.2008.01.017.
    • (2008) DNA Repair (Amst) , vol.7 , pp. 834-848
    • Brooks, P.J.1    Cheng, T.-F.2    Cooper, L.3
  • 67
    • 84856301080 scopus 로고    scopus 로고
    • Autoimmunity Initiates in Nonhematopoietic Cells and Progresses via Lymphocytes in an Interferon-Dependent Autoimmune Disease
    • Gall A, Treuting P, Elkon KB, Loo Y-M, Gale M, et al. (2012) Autoimmunity Initiates in Nonhematopoietic Cells and Progresses via Lymphocytes in an Interferon-Dependent Autoimmune Disease. Immunity 36: 120-131 doi:10.1016/j.immuni.2011.11.018.
    • (2012) Immunity , vol.36 , pp. 120-131
    • Gall, A.1    Treuting, P.2    Elkon, K.B.3    Loo, Y.-M.4    Gale, M.5
  • 69
    • 0036226603 scopus 로고    scopus 로고
    • BLAT-the BLAST-like alignment tool
    • Kent WJ, (2002) BLAT-the BLAST-like alignment tool. Genome Res 12: 656-664 doi:10.1101/gr.229202.
    • (2002) Genome Res , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 70
    • 0033634972 scopus 로고    scopus 로고
    • Activation of p53 or loss of the Cockayne syndrome group B repair protein causes metaphase fragility of human U1, U2, and 5S genes
    • Yu A, Fan HY, Liao D, Bailey AD, Weiner AM, (2000) Activation of p53 or loss of the Cockayne syndrome group B repair protein causes metaphase fragility of human U1, U2, and 5S genes. Mol Cell 5: 801-810.
    • (2000) Mol Cell , vol.5 , pp. 801-810
    • Yu, A.1    Fan, H.Y.2    Liao, D.3    Bailey, A.D.4    Weiner, A.M.5
  • 71
    • 77955801615 scopus 로고    scopus 로고
    • Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
    • Galaxy Team
    • Goecks J, Nekrutenko A, Taylor J, (2010) Galaxy Team (2010) Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol 11: R86 doi:10.1186/gb-2010-11-8-r86.
    • (2010) Genome Biol , vol.11
    • Goecks, J.1    Nekrutenko, A.2    Taylor, J.3
  • 72
    • 25844449770 scopus 로고    scopus 로고
    • Galaxy: a platform for interactive large-scale genome analysis
    • Giardine B, Riemer C, Hardison RC, Burhans R, Elnitski L, et al. (2005) Galaxy: a platform for interactive large-scale genome analysis. Genome Res 15: 1451-1455 doi:10.1101/gr.4086505.
    • (2005) Genome Res , vol.15 , pp. 1451-1455
    • Giardine, B.1    Riemer, C.2    Hardison, R.C.3    Burhans, R.4    Elnitski, L.5
  • 74
    • 33747823564 scopus 로고    scopus 로고
    • MEME: discovering and analyzing DNA and protein sequence motifs
    • Bailey TL, Williams N, Misleh C, Li WW, (2006) MEME: discovering and analyzing DNA and protein sequence motifs. Nucleic Acids Research 34: W369-W373 doi:10.1093/nar/gkl198.
    • (2006) Nucleic Acids Research , vol.34
    • Bailey, T.L.1    Williams, N.2    Misleh, C.3    Li, W.W.4
  • 76
    • 0023431644 scopus 로고
    • Distinct factors with Sp1 and NF-A specificities bind to adjacent functional elements of the human U2 snRNA gene enhancer
    • Ares M, Chung JS, Giglio L, Weiner AM, (1987) Distinct factors with Sp1 and NF-A specificities bind to adjacent functional elements of the human U2 snRNA gene enhancer. Genes Dev 1: 808-817.
    • (1987) Genes Dev , vol.1 , pp. 808-817
    • Ares, M.1    Chung, J.S.2    Giglio, L.3    Weiner, A.M.4
  • 78
    • 25444517056 scopus 로고    scopus 로고
    • MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes
    • Marinescu VD, Kohane IS, Riva A, (2005) MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes. BMC Bioinformatics 6: 79 doi:10.1186/1471-2105-6-79.
    • (2005) BMC Bioinformatics , vol.6 , pp. 79
    • Marinescu, V.D.1    Kohane, I.S.2    Riva, A.3
  • 79
    • 13444272087 scopus 로고    scopus 로고
    • Entrez Gene: gene-centered information at NCBI
    • Maglott D, (2004) Entrez Gene: gene-centered information at NCBI. Nucleic Acids Research 33: D54-D58 doi:10.1093/nar/gki031.
    • (2004) Nucleic Acids Research , vol.33
    • Maglott, D.1
  • 80
    • 84858983547 scopus 로고    scopus 로고
    • KEGG for integration and interpretation of large-scale molecular data sets
    • Kanehisa M, Goto S, Sato Y, Furumichi M, Tanabe M, (2011) KEGG for integration and interpretation of large-scale molecular data sets. Nucleic Acids Research 40: D109-D114 doi:10.1093/nar/gkr988.
    • (2011) Nucleic Acids Research , vol.40
    • Kanehisa, M.1    Goto, S.2    Sato, Y.3    Furumichi, M.4    Tanabe, M.5
  • 81
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: kyoto encyclopedia of genes and genomes
    • Kanehisa M, Goto S, (2000) KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Research 28: 27-30.
    • (2000) Nucleic Acids Research , vol.28 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2


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