Cockayne syndrome group B protein (CSB) plays a general role in chromatin maintenance and remodeling

Proceedings of the National Academy of Sciences of the United States of America

Volumn 103, Issue 25, 2006, Pages 9613-9618

  Newman, John C ^a   Bailey, Arnold D ^a   Weiner, Alan M ^a  

^a UNIVERSITY OF WASHINGTON SCHOOL OF MEDICINE   (United States)

Author keywords

DNA repair; L2L; Microarray; Transcription

Indexed keywords

ADENOSINE TRIPHOSPHATASE; COCKAYNE SYNDROME GROUP B PROTEIN; GENE PRODUCT; HISTONE DEACETYLASE INHIBITOR; NICOTINAMIDE ADENINE DINUCLEOTIDE ADENOSINE DIPHOSPHATE RIBOSYLTRANSFERASE; PROTEIN SWI; RNA POLYMERASE II; UNCLASSIFIED DRUG;

APOPTOSIS; ARTICLE; CHROMATIN ASSEMBLY AND DISASSEMBLY; CHROMATIN STRUCTURE; COCKAYNE SYNDROME; CONTROLLED STUDY; DEVELOPMENTAL DISORDER; DNA METHYLATION; DNA MICROARRAY; DNA REPAIR; DNA TRANSCRIPTION; ENZYME ACTIVITY; GENE CONTROL; HUMAN; HUMAN CELL; INFLAMMATION; PRIORITY JOURNAL; TRANSCRIPTION REGULATION;

CELL LINE; CELL SURVIVAL; CHROMATIN; CHROMATIN ASSEMBLY AND DISASSEMBLY; DIOXOLES; DNA HELICASES; DNA REPAIR ENZYMES; DNA-BINDING PROTEINS; GENE DOSAGE; GENE EXPRESSION; GENE EXPRESSION REGULATION; HISTONE DEACETYLASES; HUMANS; INFLAMMATION; ISOQUINOLINES; POLY(ADP-RIBOSE) POLYMERASES; TELOMERASE; TETRAHYDROISOQUINOLINES; TRANSCRIPTION FACTORS; TUMOR SUPPRESSOR PROTEINS;

EID: 33745460647     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0510909103     Document Type: Article

References (60)

1. Nance, M. A. & Berry, S. A. (1992) Am. J. Med. Genet. 42, 68-84.
2. Selby, C. P. & Sancar, A. (1997) J. Biol. Chem. 272, 1885-1890.
3. Citterio, E., Rademakers, S., van der Horst, G. T., van Gool, A. J., Hoeijmakers, J. H. & Vermeiden, W. (1998) J. Biol. Chem. 273, 11844-11851.
4. Christiansen, M., Stevnsner, T., Modin, C., Martensen, P. M., Brosh, R. M., Jr., & Bohr, V. A. (2003) Nucleic Acids Res. 31, 963-973.
5. Beerens, N., Hoeijmakers, J. H., Kanaar, R., Vermeulen, W. & Wyman, C. (2005) J. Biol. Chem. 280, 4722-4729.
6. Citterio, E., Van Den Boom, V., Schnitzler, G., Kanaar, R., Bonte, E., Kingston, R. E., Hoeijmakers, J. H. & Vermeulen, W. (2000) Mol. Cell. Biol. 20, 7643-7653.
7. Kamiuchi, S., Saijo, M., Citterio, E., de Jager, M., Hoeijmakers, J. H. & Tanaka, K. (2002) Proc. Natl. Acad. Sci. USA 99, 201-206.
8. Rapin, I., Lindenbaum, Y., Dickson, D. W., Kraemer, K. H. & Robbins, J. H. (2000) Neurology 55, 1442-1449.
9. Cleaver, J. E., Thompson, L. H., Richardson, A. S. & States, J. C. (1999) Hum. Mutat. 14, 9-22.
10. Venema, J., Mullenders, L. H., Natarajan, A. T., van Zeeland, A. A. & Mayne, L. V. (1990) Proc. Natl. Acad. Sci. USA 87, 4707-4711.
11. Tuo, J., Jaruga, P., Rodriguez, H., Dizdaroglu, M. & Bohr, V. A. (2002)J. Biol. Chem. 277, 30832-30837.
12. Bradsher, J., Auriol, J., Proietti de Santis, L., Iben, S., Vonesch, J. L., Grummt, I. & Egly, J. M. (2002) Mol. Cell 10, 819-829.
13. Iben, S., Tschochner, H., Bier, M., Hoogstraten, D., Hozak, P., Egly, J. M. & Grummt, I. (2002) Cell 109, 297-306.
14. Dubaele, S. & Egly, J. M. (2002) J. Eur. Acad. Dermatol. Venereol. 16, 220-226.
15. Lee, S. K., Yu, S. L., Prakash, L. & Prakash, S. (2002) Cell 109, 823-834.
16. Selby, C. P. & Sancar, A. (1997) Proc. Natl. Acad. Sci. USA 94, 11205-11209.
17. Kyng, K. J., May, A., Brosh, R. M., Jr., Cheng, W. H., Chen, C., Becker, K. G. & Bohr, V. A. (2003) Oncogene 22, 1135-1149.
18. Groisman, R., Polanowska, J., Kuraoka, I., Sawada, J., Saijo, M., Drapkin, R., Kisselev, A. F., Tanaka, K. & Nakatani, Y. (2003) Cell 113, 357-367.
19. Yu, A., Fan, H. Y., Liao, D., Bailey, A. D. & Weiner, A. M. (2000) Mol. Cell 5, 801-810.
20. Selzer, R. R., Nyaga, S., Tuo, J., May, A., Muftuoglu, M., Christiansen, M., Citterio, E., Brosh, R. M., Jr., & Bohr, V. A. (2002) Nucleic Acids Res. 30, 782-793.
21. da Costa, R. M., Riou, L., Paquola, A., Menck, C. F. & Sarasin, A. (2005) Oncogene 24, 1359-1374.
22. Newman, J. C. & Weiner, A. M. (2005) Genome Biol. 6, R81.
23. Troelstra, C., van Gool, A., de Wit, J., Vermeulen, W., Bootsma, D. & Hoeijmakers, J. H. (1992) Cell 71, 939-953.
24. Pipas, J. M. & Levine, A. J. (2001) Semin. Cancer Biol. 11, 23-30.
25. Wang, X. W., Yeh, H., Schaeffer, L., Roy, R., Moncollin, V., Egly, J. M., Wang, Z., Freidberg, E. C., Evans, M. K., Taffe, B. G., et al. (1995) Nat. G0enet. 10, 188-195.
26. Ashburner, M., Ball, C. A., Blake, J. A., Botstein, D., Butler, H., Cherry, J. M., Davis, A. P., Dolinski, K., Dwight, S. S., Eppig, J. T., et al. (2000) Nat. Genet. 25, 25-29.
27. Huang, L., Sowa, Y., Sakai, T. & Pardee, A. B. (2000) Oncogene 19, 5712-5719.
28. Castro-Galache, M. D., Ferragut, J. A., Barbera, V. M., Martin-Orozco, E., Gonzalez-Ros, J. M., Garcia-Morales, P. & Saceda, M. (2003) Int. J. Cancer 104, 579-586.
29. Liu, L. T., Chang, H. C., Chiang, L. C. & Hung, W. C. (2003) Cancer Res. 63, 3069-3072.
30. Taniura, S., Kamitani, H., Watanabe, T. & Eling, T. E. (2002) J. Biol. Chem. 277, 16823-16830.
31. Chandrasekharan, N. V. & Simmons, D. L. (2004) Genome Biol. 5, 241.
32. Jenner, R. G. & Young, R. A. (2005) Nat. Rev. Microbiol. 3, 281-294.
33. Kraus, W. L. & Lis, J. T. (2003) Cell 113, 677-683.
34. Thorslund, T., von Kobbe, C., Harrigan, J. A., Indig, F. E., Christiansen, M., Stevnsner, T. & Bohr, V. A. (2005) Mol. Cell. Biol. 25, 7625-7636.
35. Lee, S. K., Yu, S. L., Prakash, L. & Prakash, S. (2001) Mol. Cell. Biol. 21, 8651-8656.
36. Tantin, D., Kansal, A. & Carey, M. (1997) Mol. Cell. Biol. 17, 6803-6814.
37. Kleiman, F. E., Wu-Baer, F., Fonseca, D., Kaneko, S., Baer, R. & Manley, J. L. (2005) Genes Dev. 19, 1227-1237.
38. Starita, L. M., Horwitz, A. A., Keogh, M. C., Ishioka, C., Parvin, J. D. & Chiba, N. (2005) J. Biol. Chem. 280, 24498-24505.
39. Bregman, D. B., Halaban, R., van Gool, A. J., Henning, K. A., Friedberg, E. C. & Warren, S. L. (1996) Proc. Natl. Acad. Sci. USA 93, 11586-11590.
40. Takebayashi, Y., Pourquier, P., Zimonjic, D. B., Nakayama, K., Emmert, S., Ueda, T., Urasaki, Y., Kanzaki, A., Akiyama, S. I., Popescu, N., et al. (2001) Nat. Med. 7, 961-966.
41. Minuzzo, M., Marchini, S., Broggini, M., Faircloth, G., D'Incalci, M. & Mantovani, R. (2000) Proc. Natl. Acad. Sci. USA 97, 6780-6784.
42. Synold, T. W., Dussault, I. & Forman, B. M. (2001) Nat. Med. 7, 584-590.
43. Friedman, D., Hu, Z., Kolb, E. A., Gorfajn, B. & Scotto, K. W. (2002) Cancer Res. 62, 3377-3381.
44. Ho Sui, S. J., Mortimer, J. R., Arenillas, D. J., Brumm, J., Walsh, C. J., Kennedy, B. P. & Wasserman, W. W. (2005) Nucleic Acids Res. 33, 3154-3164.
45. Merika, M. & Thanos, D. (2001) Curr. Opin. Genet. Dev. 11, 205-208.
46. Taniguchi, T. & Takaoka, A. (2001) Nat. Rev. Mol. Cell. Biol. 2, 378-386.
47. Chang, H. M., Paulson, M., Holko, M., Rice, C. M., Williams, B. R., Marie, I. & Levy, D. E. (2004) Proc. Natl. Acad. Sci. USA 101, 9578-9583.
48. Richardson, B. (2003) Age. Res. Rev. 2, 245-261.
49. Lu, T., Pan, Y., Kao, S. Y., Li, C., Kohane, I., Chan, J. & Yankner, B. A. (2004) Nature 429, 883-891.
50. Kyng, K. J., May, A., Kolvraa, S. & Bohr, V. A. (2003) Proc. Natl. Acad. Sci. USA 100, 12259-12264.
51. Blalock, E. M., Geddes, J. W., Chen, K. C., Porter, N. M., Markesbery, W. R. & Landfield, P. W. (2004) Proc. Natl. Acad. Sci. USA 101, 2173-2178.
52. Ferrucci, L., Ble, A., Bandinelli, S., Lauretani, F., Suthers, K. & Guralnik, J. M. (2004) Aging Clin. Exp. Res. 16, 240-243.
53. Horibata, K., Iwamoto, Y., Kuraoka, I., Jaspers, N. G., Kurimasa, A., Oshimura, M., Ichihashi, M. & Tanaka, K. (2004) Proc. Natl. Acad. Sci. USA 101, 15410-15415.
54. Gong, F., Kwon, Y. & Smerdon, M. J. (2005) DNA Rep. 4, 884-896.
55. Johnson, J. M., Edwards, S., Shoemaker, D. & Schadt, E. E. (2005) Trends Genet. 21, 93-102.
56. Morillon, A., Karabetsou, N., Nair, A. & Mellor, J. (2005) Mol. Cell 18, 723-734.
57. Sudarsanam, P., Iyer, V. R., Brown, P. O. & Winston, F. (2000) Proc. Natl. Acad. Sci. USA 97, 3364-3369.
58. Kiyono, T., Foster, S. A., Koop, J. I., McDougall, J. K., Galloway, D. A. & Klingelhutz, A. J. (1998) Nature 396, 84-88.
59. Affymetrix (2001) Microarray Suite User Guide, Version 5 (Affymetrix, Santa Clara, CA).
60. Irizarry, R. A., Bolstad, B. M., Collin, F., Cope, L. M., Hobbs, B. & Speed, T. P. (2003) Nucleic Acids Res. 31, e15.