-
1
-
-
33745626459
-
Improved scoring of functional groups from gene expression data by decorrelating GO graph structure
-
Alexa A, Rahnenfuhrer J and Lengauer T 2006 Improved scoring of functional groups from gene expression data by decorrelating GO graph structure. Bioinformatics 22 1600-1607
-
(2006)
Bioinformatics
, vol.22
, pp. 1600-1607
-
-
Alexa, A.1
Rahnenfuhrer, J.2
Lengauer, T.3
-
2
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW and Lipman DJ 1990 Basic local alignment search tool. J. Mol. Biol. 215 403-410
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
3
-
-
33745963372
-
PHO2, a phosphate overaccumulator, is caused by a nonsense mutation in a microRNA399 target gene
-
Aung K, Lin SI, Wu CC, Huang YT, Su CL and Chiou TJ 2006 pho2, a phosphate overaccumulator, is caused by a nonsense mutation in a microRNA399 target gene. Plant Physiol. 141 1000-1011
-
(2006)
Plant Physiol.
, vol.141
, pp. 1000-1011
-
-
Aung, K.1
Lin, S.I.2
Wu, C.C.3
Huang, Y.T.4
Su, C.L.5
Chiou, T.J.6
-
4
-
-
0035209519
-
Ubiquitylation in plants: A post-genomic look at a post-translational modification
-
Bachmair A, Novatchkova M, Potuschak T and Eisenhaber F 2001 Ubiquitylation in plants: a post-genomic look at a post-translational modification. Trends Plant Sci. 6 463-470
-
(2001)
Trends Plant Sci.
, vol.6
, pp. 463-470
-
-
Bachmair, A.1
Novatchkova, M.2
Potuschak, T.3
Eisenhaber, F.4
-
5
-
-
33745960196
-
PHO2, micro-RNA399, and PHR1 define a phosphate-signaling pathway in plants
-
Bari R, Datt Pant B, Stitt M and Scheible WR 2006 PHO2, micro-RNA399, and PHR1 define a phosphate-signaling pathway in plants. Plant Physiol. 141 988-999
-
(2006)
Plant Physiol.
, vol.141
, pp. 988-999
-
-
Bari, R.1
Datt Pant, B.2
Stitt, M.3
Scheible, W.R.4
-
6
-
-
0347444723
-
MicroRNAs: Genomics, biogenesis, mechanism, and function
-
Bartel DP 2004 MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116 281-297
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
9
-
-
34848890339
-
Global transcription profiling reveals differential responses to chronic nitrogen stress and putative nitrogen regulatory components in arabidop-sis
-
Bi Y-M, Wang RL, Zhu T and Rothstein SJ 2007 Global transcription profiling reveals differential responses to chronic nitrogen stress and putative nitrogen regulatory components in Arabidop-sis. BMC Genomics 8 281-297
-
(2007)
BMC Genomics
, vol.8
, pp. 281-297
-
-
Bi, Y.-M.1
Wang, R.L.2
Zhu, T.3
Rothstein, S.J.4
-
10
-
-
41849084853
-
Identification and characterization of small RNAs from the phloem of brassica napus
-
Buhtz A, Springer F, Chappell L, Baulcombe DC and Kehr J 2008 Identification and characterization of small RNAs from the phloem of Brassica napus. Plant J. 53 739-749
-
(2008)
Plant J.
, vol.53
, pp. 739-749
-
-
Buhtz, A.1
Springer, F.2
Chappell, L.3
Baulcombe, D.C.4
Kehr, J.5
-
11
-
-
0038299558
-
Role of microRNAs in plant and animal development
-
Carrington JC and Ambros V 2003 Role of microRNAs in plant and animal development. Science 301 336-338
-
(2003)
Science
, vol.301
, pp. 336-338
-
-
Carrington, J.C.1
Ambros, V.2
-
12
-
-
33846574715
-
The role of microRNAs in sensing nutrient stress
-
Chiou TJ 2007 The role of microRNAs in sensing nutrient stress. Plant Cell Environ. 30 323-332
-
(2007)
Plant Cell Environ.
, vol.30
, pp. 323-332
-
-
Chiou, T.J.1
-
13
-
-
33745270651
-
Regulation of phosphate homeostasis by microRNA in arabi-dopsis
-
Chiou TJ, Aung K, Lin SI, Wu CC, Chiang SF and Su CL 2006 Regulation of phosphate homeostasis by microRNA in Arabi-dopsis. Plant Cell 18 412-421
-
(2006)
Plant Cell
, vol.18
, pp. 412-421
-
-
Chiou, T.J.1
Aung, K.2
Lin, S.I.3
Wu, C.C.4
Chiang, S.F.5
Su, C.L.6
-
14
-
-
0003253265
-
Molecular and developmental biology of inorganic nitrogen nutrition
-
E Meyerowitz and C Somerville (Rockville, MD: American Society of Plant Biologists)
-
Crawford NM and Forde BG 2002 Molecular and developmental biology of inorganic nitrogen nutrition; in The arabidopsis book (eds) E Meyerowitz and C Somerville (Rockville, MD: American Society of Plant Biologists) (http://www.aspb.org/publications/arabidopsis)
-
(2002)
The Arabidopsis Book
-
-
Crawford, N.M.1
Forde, B.G.2
-
15
-
-
51949103799
-
Phosphate starvation signaling: A threesome controls systemic pi homeostasis
-
Doerner P 2008 Phosphate starvation signaling: a threesome controls systemic Pi homeostasis. Curr. Opin. Plant Biol. 11 1-5
-
(2008)
Curr. Opin. Plant Biol.
, vol.11
, pp. 1-5
-
-
Doerner, P.1
-
16
-
-
57749178408
-
Phosphate signaling in arabidopsis and oryza sativa
-
Fang Z, Shao C, Meng Y, Wu P and Chen M 2009 Phosphate signaling in Arabidopsis and Oryza sativa. Plant Sci. 176 170-180
-
(2009)
Plant Sci.
, vol.176
, pp. 170-180
-
-
Fang, Z.1
Shao, C.2
Meng, Y.3
Wu, P.4
Chen, M.5
-
18
-
-
27844526222
-
A miRNA involved in phosphate-starvation response in arabidopsis
-
Fujii H, Chiou TJ, Lin SI, Aung K and Zhu JK 2005 A miRNA involved in phosphate-starvation response in Arabidopsis. Curr. Biol. 15 2038-2043
-
(2005)
Curr. Biol.
, vol.15
, pp. 2038-2043
-
-
Fujii, H.1
Chiou, T.J.2
Lin, S.I.3
Aung, K.4
Zhu, J.K.5
-
19
-
-
9444255260
-
Can less yield more? Is reducing nutrient input into the environment compatible with maintaining crop production
-
Good AG, Shrawat AK and Muench DG 2004 Can less yield more? Is reducing nutrient input into the environment compatible with maintaining crop production. Trends Plant Sci. 9 597-605
-
(2004)
Trends Plant Sci.
, vol.9
, pp. 597-605
-
-
Good, A.G.1
Shrawat, A.K.2
Muench, D.G.3
-
20
-
-
33749059160
-
MIRBASE: The microRNA sequence database
-
Griffiths-Jones S 2006 miRBase: the microRNA sequence database. Methods Mol. Biol. 342 129-138
-
(2006)
Methods Mol. Biol.
, vol.342
, pp. 129-138
-
-
Griffiths-Jones, S.1
-
21
-
-
24944510549
-
MicroRNA directs mRNA cleavage of the transcription factor NAC1 to downregu-late auxin signals for arabidopsis lateral root development
-
Guo HS, Xie Q, Fei JF and Chua NH 2005 MicroRNA directs mRNA cleavage of the transcription factor NAC1 to downregu-late auxin signals for Arabidopsis lateral root development. Plant Cell 17 1376-1386
-
(2005)
Plant Cell
, vol.17
, pp. 1376-1386
-
-
Guo, H.S.1
Xie, Q.2
Fei, J.F.3
Chua, N.H.4
-
22
-
-
77249102566
-
Significant acidification in major Chinese croplands
-
Guo JH, Liu XJ, Zhang Y, Shen JL, Han WX, Zhang WF, Christie P, Goulding KWT, et al. 2010 Significant acidification in major Chinese croplands. Science 327 1008-1010
-
(2010)
Science
, vol.327
, pp. 1008-1010
-
-
Guo, J.H.1
Liu, X.J.2
Zhang, Y.3
Shen, J.L.4
Han, W.X.5
Zhang, W.F.6
Christie, P.7
Goulding, K.W.T.8
-
23
-
-
0038120845
-
Changes in gene expression in arabidopsis shoots during phosphate starvation and the potential for developing smart plants
-
Hammond JP, Bennett MJ, Bowen HC, Broadley MR, Eastwood DC, May TM, Rahn C, Swarup R, et al. 2003 Changes in gene expression in Arabidopsis shoots during phosphate starvation and the potential for developing smart plants. Plant Physiol. 132 578-596
-
(2003)
Plant Physiol.
, vol.132
, pp. 578-596
-
-
Hammond, J.P.1
Bennett, M.J.2
Bowen, H.C.3
Broadley, M.R.4
Eastwood, D.C.5
May, T.M.6
Rahn, C.7
Swarup, R.8
-
24
-
-
0034671791
-
Orchestrated transcription of key pathways in arabidopsis by the circadian clock
-
Harmer SL, Hogenesch JB, Straume M, Chang HS, Han B, Zhu T, Wang X, Kreps JA, et al. 2000 Orchestrated transcription of key pathways in Arabidopsis by the circadian clock. Science 290 2110-2113
-
(2000)
Science
, vol.290
, pp. 2110-2113
-
-
Harmer, S.L.1
Hogenesch, J.B.2
Straume, M.3
Chang, H.S.4
Han, B.5
Zhu, T.6
Wang, X.7
Kreps, J.A.8
-
25
-
-
11144356565
-
Transcript profiling of early lateral root initiation
-
Himanen K, Vuylsteke M, Vanneste S, Vercruysse S, Boucheron E, Alard P, Chriqui D, Montagu MV, et al. 2004 Transcript profiling of early lateral root initiation. Proc. Natl. Acad. Sci. USA 101 5146-5151
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 5146-5151
-
-
Himanen, K.1
Vuylsteke, M.2
Vanneste, S.3
Vercruysse, S.4
Boucheron, E.5
Alard, P.6
Chriqui, D.7
Montagu, M.V.8
-
26
-
-
33751006151
-
RankProd: A bioconductor package for detecting differentially expressed genes in meta-analysis
-
Hong F, Breitling R, McEntee CW, Wittner BS, Nemhauser JL and Chory J 2006 RankProd: a bioconductor package for detecting differentially expressed genes in meta-analysis. Bioinformatics 22 2825-2827
-
(2006)
Bioinformatics
, vol.22
, pp. 2825-2827
-
-
Hong, F.1
Breitling, R.2
McEntee, C.W.3
Wittner, B.S.4
Nemhauser, J.L.5
Chory, J.6
-
27
-
-
71049136041
-
Uncovering small RNA-mediated responses to phosphate deficiency in arabidopsis by deep sequencing
-
Hsieh L, Lin S, Shih AC, Chen J, Lin W, Tseng C, Li W and Chiou T 2009 Uncovering small RNA-Mediated responses to phosphate deficiency in Arabidopsis by deep sequencing. Plant Physiol. 151 2120-2132
-
(2009)
Plant Physiol.
, vol.151
, pp. 2120-2132
-
-
Hsieh, L.1
Lin, S.2
Shih, A.C.3
Chen, J.4
Lin, W.5
Tseng, C.6
Li, W.7
Chiou, T.8
-
28
-
-
20144377218
-
Integrated transcriptional profiling and linkage analysis for identification of genes underlying disease
-
Hubner N, Caroline AW, Zimdahl H, Petretto E, Schulz H, Maciver F, Mueller M, Hummel O, et al. 2005 Integrated transcriptional profiling and linkage analysis for identification of genes underlying disease. Nat. Genet. 37 243-253
-
(2005)
Nat. Genet.
, vol.37
, pp. 243-253
-
-
Hubner, N.1
Caroline, A.W.2
Zimdahl, H.3
Petretto, E.4
Schulz, H.5
Maciver, F.6
Mueller, M.7
Hummel, O.8
-
29
-
-
33846483860
-
Complex reactions catalyzed by cytochrome P450 enzymes
-
Isin EM and Guengerich FP 2007 Complex reactions catalyzed by cytochrome P450 enzymes. Biochem. Biophys. Acta 1770 314-329
-
(2007)
Biochem. Biophys. Acta
, vol.1770
, pp. 314-329
-
-
Isin, E.M.1
Guengerich, F.P.2
-
31
-
-
2942672580
-
Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
-
Jones-Rhoades MJ and Bartel DP 2004 Computational identification of plant microRNAs and their targets, including a stress-induced miRNA. Mol. Cell 14 787-799
-
(2004)
Mol. Cell
, vol.14
, pp. 787-799
-
-
Jones-Rhoades, M.J.1
Bartel, D.P.2
-
32
-
-
43149091467
-
A fungal cytochrome P450 is expressed during the interaction between the fungal pathogen heterobasidion annosum sensulato and conifer trees
-
Karlsson M, Elfstrand M, Stenlid J and Olson A 2008 A fungal cytochrome P450 is expressed during the interaction between the fungal pathogen Heterobasidion annosum sensulato and conifer trees. DNA Seq. 19 115-120
-
(2008)
DNA Seq.
, vol.19
, pp. 115-120
-
-
Karlsson, M.1
Elfstrand, M.2
Stenlid, J.3
Olson, A.4
-
33
-
-
0035028609
-
Gene expression profiles during the initial phase of salt stress in rice
-
Kawasaki S, Borchert C, Deyholos M, Wang H, Brazille S, Kawai K, Galbraith D and Bohnert H 2001 Gene expression profiles during the initial phase of salt stress in rice. Plant Cell 13 889-905
-
(2001)
Plant Cell
, vol.13
, pp. 889-905
-
-
Kawasaki, S.1
Borchert, C.2
Deyholos, M.3
Wang, H.4
Brazille, S.5
Kawai, K.6
Galbraith, D.7
Bohnert, H.8
-
34
-
-
33644993733
-
Genome analysis and functional characterization of the E2 and RING-type E3 ligase ubiquitination enzymes of arabidopsis
-
Kraft E, Stone SL, Ma L, Su N, Gao Y, Lau OS, Deng XW and Callis J 2005 Genome analysis and functional characterization of the E2 and RING-type E3 ligase ubiquitination enzymes of Arabidopsis. Plant Physiol. 139 1597-1611
-
(2005)
Plant Physiol.
, vol.139
, pp. 1597-1611
-
-
Kraft, E.1
Stone, S.L.2
Ma, L.3
Su, N.4
Gao, Y.5
Lau, O.S.6
Deng, X.W.7
Callis, J.8
-
35
-
-
0027751663
-
The C. Elegans hetero-chronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
-
Lee RC, Feinbaum RL and Ambros V 1993 The C. elegans hetero-chronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell 75 843-854
-
(1993)
Cell
, vol.75
, pp. 843-854
-
-
Lee, R.C.1
Feinbaum, R.L.2
Ambros, V.3
-
36
-
-
33646344515
-
Expression profiles of 10,422 genes at early stage of low nitrogen stress in rice assayed using a cDNA microarray
-
Lian X, Wang S, Zhang J, Feng Q, Zhang L, Fan D, Li X, Yuan D, et al. 2006 Expression profiles of 10,422 genes at early stage of low nitrogen stress in rice assayed using a cDNA microarray. Plant Mol Biol 60 617-631
-
(2006)
Plant Mol Biol
, vol.60
, pp. 617-631
-
-
Lian, X.1
Wang, S.2
Zhang, J.3
Feng, Q.4
Zhang, L.5
Fan, D.6
Li, X.7
Yuan, D.8
-
37
-
-
33644795388
-
Loss of function of OsDCL1 affects microRNA accumulation and causes developmental defects in rice
-
Liu B, Li P, Li X, Liu C, Cao S, Chu C and Cao X 2005 Loss of function of OsDCL1 affects microRNA accumulation and causes developmental defects in rice. Plant Physiol. 39 296-305
-
(2005)
Plant Physiol.
, vol.39
, pp. 296-305
-
-
Liu, B.1
Li, P.2
Li, X.3
Liu, C.4
Cao, S.5
Chu, C.6
Cao, X.7
-
38
-
-
0036800844
-
Genomic evidence for COP1 as a repressor of light regulated gene expression and development in arabidopsis
-
Ma L, Gao Y, Qu L, Chen Z, Li J, Zhao H and Deng XW 2002 Genomic evidence for COP1 as a repressor of light regulated gene expression and development in Arabidopsis. Plant Cell 14 2383-2398
-
(2002)
Plant Cell
, vol.14
, pp. 2383-2398
-
-
Ma, L.1
Gao, Y.2
Qu, L.3
Chen, Z.4
Li, J.5
Zhao, H.6
Deng, X.W.7
-
39
-
-
0033662422
-
The transcriptome of arabi-dopsis thaliana during systemic acquired resistance
-
Maleck K, Levine A, Eulgem T, Morgan A, Schmid J, Lawton KA, Dangl JL and Dietrich RA 2000 The transcriptome of Arabi-dopsis thaliana during systemic acquired resistance. Nat. Genet. 26 403-410
-
(2000)
Nat. Genet.
, vol.26
, pp. 403-410
-
-
Maleck, K.1
Levine, A.2
Eulgem, T.3
Morgan, A.4
Schmid, J.5
Lawton, K.A.6
Dangl, J.L.7
Dietrich, R.A.8
-
40
-
-
2942697259
-
MicroRNA regulation of NAC-domain targets is required for proper formation and separation of adjacent embryonic, vegetative, and floral organs
-
Mallory AC, Dugas DV, Bartel DB and Bartel B 2004 MicroRNA regulation of NAC-domain targets is required for proper formation and separation of adjacent embryonic, vegetative, and floral organs. Curr. Biol. 14 1035-1046
-
(2004)
Curr. Biol.
, vol.14
, pp. 1035-1046
-
-
Mallory, A.C.1
Dugas, D.V.2
Bartel, D.B.3
Bartel, B.4
-
41
-
-
33745271035
-
Functions of microRNAs and related small RNAs in plants
-
Mallory A and Vaucheret H 2006 Functions of microRNAs and related small RNAs in plants. Nat. Gene.tS31-36
-
(2006)
Nat. Gene
-
-
Mallory, A.1
Vaucheret, H.2
-
42
-
-
33845876899
-
Vacuolar transporters and their essential role in plant metabolism
-
Martinoia E, Maeshima M and Neuhaus E 2007 Vacuolar transporters and their essential role in plant metabolism. J. Exp. Bot. 58 83-102
-
(2007)
J. Exp. Bot.
, vol.58
, pp. 83-102
-
-
Martinoia, E.1
Maeshima, M.2
Neuhaus, E.3
-
43
-
-
0029843387
-
Nitrate transport and compartmentation in cereal root cells
-
Miller AJ and Smith SJ 1996 Nitrate transport and compartmentation in cereal root cells. J. Exp. Bot. 300 843-854
-
(1996)
J. Exp. Bot.
, vol.300
, pp. 843-854
-
-
Miller, A.J.1
Smith, S.J.2
-
44
-
-
23844510188
-
A genome-wide transcriptional analysis using arabidopsis thaliana affymetrix gene chips determined plant responses to phosphate deprivation
-
Misson J, Raghothama KG, Jain A, Jouhet J, Block MA, Bligny R, Ortet P, Creff A, et al. 2005 A genome-wide transcriptional analysis using Arabidopsis thaliana Affymetrix gene chips determined plant responses to phosphate deprivation. Proc. Natl. Acad. Sci. USA 102 11934-11939
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 11934-11939
-
-
Misson, J.1
Raghothama, K.G.2
Jain, A.3
Jouhet, J.4
Block, M.A.5
Bligny, R.6
Ortet, P.7
Creff, A.8
-
45
-
-
0038404731
-
Plant cytochromes P450: Tools for pharmacology, plant protection and phytoremediation
-
Morant M, Bak S, Moller BL and Werck-Reichhart D 2003 Plant cytochromes P450: tools for pharmacology, plant protection and phytoremediation. Curr. Opin. Biotechnol. 14 1511-1562
-
(2003)
Curr. Opin. Biotechnol.
, vol.14
, pp. 1511-1562
-
-
Morant, M.1
Bak, S.2
Moller, B.L.3
Werck-Reichhart, D.4
-
46
-
-
4043128071
-
Genetic analysis of genome-wide variation in human gene expression
-
Morley M, Molony CM, Weber TM, Devlin JL, Ewens KG, Spielman RS and Cheung VG 2004 Genetic analysis of genome-wide variation in human gene expression. Nature 430 743-747
-
(2004)
Nature
, vol.430
, pp. 743-747
-
-
Morley, M.1
Molony, C.M.2
Weber, T.M.3
Devlin, J.L.4
Ewens, K.G.5
Spielman, R.S.6
Cheung, V.G.7
-
47
-
-
33846401178
-
Genome-wide analysis of the arabidopsis leaf transcriptome reveals interaction of phosphate and sugar metabolism
-
Muller R, Morant M, Jarmer H, Nilsson L and Nielsen TH 2007 Genome-wide analysis of the Arabidopsis leaf transcriptome reveals interaction of phosphate and sugar metabolism. Plant Physiol. 143 156-171
-
(2007)
Plant Physiol.
, vol.143
, pp. 156-171
-
-
Muller, R.1
Morant, M.2
Jarmer, H.3
Nilsson, L.4
Nielsen, T.H.5
-
48
-
-
33846101405
-
The TIGR rice genome annotation resource: Improvements and new features
-
Ouyang S, Zhu W, Hamilton J, Lin H, Campbell M, Childs K, Thibaud-Nissen F, Malek RL, et al. 2007 The TIGR Rice Genome Annotation Resource: improvements and new features. Nucleic Acids Res. 35 883-887
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 883-887
-
-
Ouyang, S.1
Zhu, W.2
Hamilton, J.3
Lin, H.4
Campbell, M.5
Childs, K.6
Thibaud-Nissen, F.7
Malek, R.L.8
-
49
-
-
43749094759
-
Response of na -dependent ATPase activities to the contaminant ammonia nitrogen in tapes philippinarum: Possible ATPase involvement in ammonium transport
-
Pagliarani A, Bandiera P, Ventrella V, Trombetti F, Manuzzi MP, Pirini M and Borgatti AR 2008 Response of Na -dependent ATPase activities to the contaminant ammonia nitrogen in Tapes philippinarum: Possible ATPase involvement in ammonium transport. Arch. Environ. Contam. Toxicol. 55 49-56
-
(2008)
Arch. Environ. Contam. Toxicol.
, vol.55
, pp. 49-56
-
-
Pagliarani, A.1
Bandiera, P.2
Ventrella, V.3
Trombetti, F.4
Manuzzi, M.P.5
Pirini, M.6
Borgatti, A.R.7
-
50
-
-
20044381102
-
Genome-wide patterns of carbon and nitrogen regulation of gene expression validate the combined carbon and nitrogen (CN)-signaling hypothesis in plants
-
Palenchar PM, Kouranov A, Lejay LV and Coruzzi GM 2004 Genome-wide patterns of carbon and nitrogen regulation of gene expression validate the combined carbon and nitrogen (CN)-signaling hypothesis in plants. Genome Biol 5 R91
-
(2004)
Genome Biol
, vol.5
-
-
Palenchar, P.M.1
Kouranov, A.2
Lejay, L.V.3
Coruzzi, G.M.4
-
51
-
-
67650156804
-
Identification of nutrient-responsive arabidopsis and rapeseed microRNAs by comprehensive real-time polymerase chain reaction profiling and small RNA sequencing
-
Pant BD, Musialak-Lange M, Nuc P, May P, Buhtz A, Kehr J, Walther D and Scheible W 2009 Identification of nutrient-responsive Arabidopsis and Rapeseed microRNAs by comprehensive real-time polymerase chain reaction profiling and small RNA sequencing. Plant Physiol. 150 1541-1555
-
(2009)
Plant Physiol.
, vol.150
, pp. 1541-1555
-
-
Pant, B.D.1
Musialak-Lange, M.2
Nuc, P.3
May, P.4
Buhtz, A.5
Kehr, J.6
Walther, D.7
Scheible, W.8
-
52
-
-
34247232730
-
A mutation in NLA, which encodes a RING-type ubiquitin ligase, disrupts arabidopsis adaptability to nitrogen limitation
-
Peng M, Hannam C, Gu H, Bi YM and Rothstein SJ 2007 A mutation in NLA, which encodes a RING-type ubiquitin ligase, disrupts Arabidopsis adaptability to nitrogen limitation. Plant J. 50 320-337
-
(2007)
Plant J.
, vol.50
, pp. 320-337
-
-
Peng, M.1
Hannam, C.2
Gu, H.3
Bi, Y.M.4
Rothstein, S.J.5
-
53
-
-
4043060783
-
Global transcription profiling reveals multiple sugar signal transduction mechanisms in arabidopsis
-
Price J, Laxmi A, St Martin KS and Jang JC 2004 Global transcription profiling reveals multiple sugar signal transduction mechanisms in Arabidopsis. Plant Cell 16 2128-2150
-
(2004)
Plant Cell
, vol.16
, pp. 2128-2150
-
-
Price, J.1
Laxmi, A.2
St Martin, K.S.3
Jang, J.C.4
-
54
-
-
0031788953
-
From vacuolar GS-X pumps to multispecific ABC transporters
-
Rea PA, Li ZS, Ln YP, Drozdowicz YM and Martinoia E 1998 From vacuolar GS-X pumps to multispecific ABC transporters. Annu. Rev. Plant Physiol. Plant Mol. Biol. 49 727-760
-
(1998)
Annu. Rev. Plant Physiol. Plant Mol. Biol.
, vol.49
, pp. 727-760
-
-
Rea, P.A.1
Li, Z.S.2
Ln, Y.P.3
Drozdowicz, Y.M.4
Martinoia, E.5
-
55
-
-
0034708122
-
The 21-nucleotide let-7 RNA regulates developmental timing in caenorhabditis elegans
-
Reinhart BJ, Slack FJ, Basson M, Pasquinelli AE, Bettinger JC, Rougvie AE, Horvitz HR and Ruvkun G 2000 The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans. Nature 403 901-906
-
(2000)
Nature
, vol.403
, pp. 901-906
-
-
Reinhart, B.J.1
Slack, F.J.2
Basson, M.3
Pasquinelli, A.E.4
Bettinger, J.C.5
Rougvie, A.E.6
Horvitz, H.R.7
Ruvkun, G.8
-
56
-
-
0035861990
-
Automatic clustering of orthologs and in-paralogs from pairwise species comparisons
-
Remm M, Storm CE and Sonnhammer EL 2001 Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. J. Mol. Biol. 314 1041-1052
-
(2001)
J. Mol. Biol.
, vol.314
, pp. 1041-1052
-
-
Remm, M.1
Storm, C.E.2
Sonnhammer, E.L.3
-
57
-
-
0037162702
-
Prediction of plant microRNA targets
-
Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B and Bartel DP 2002 Prediction of plant microRNA targets. Cell 110 513-520
-
(2002)
Cell
, vol.110
, pp. 513-520
-
-
Rhoades, M.W.1
Reinhart, B.J.2
Lim, L.P.3
Burge, C.B.4
Bartel, B.5
Bartel, D.P.6
-
59
-
-
16544392329
-
Genome-wide reprogramming of primary and secondary metabolism, protein synthesis, celluar growth processes, and the regulatory infrastructure of arabidopsis in response to nitrogen
-
Scheible W-R, Morcuende R, Czechowski T, Fritz C, Osuna D, Palacios-Rojas N, Schindelasch D, Thimm O, et al. 2004 Genome-wide reprogramming of primary and secondary metabolism, protein synthesis, celluar growth processes, and the regulatory infrastructure of Arabidopsis in response to nitrogen. Plant Physiol. 136 2483-2499
-
(2004)
Plant Physiol.
, vol.136
, pp. 2483-2499
-
-
Scheible, W.-R.1
Morcuende, R.2
Czechowski, T.3
Fritz, C.4
Osuna, D.5
Palacios-Rojas, N.6
Schindelasch, D.7
Thimm, O.8
-
61
-
-
0035107803
-
Monitoring the expression pattern of 1,300 arabidopsis genes under drought and cold stresses by using a full-length cDNA microarray
-
Seki M, Narusaka M, Abe H, Kasuko M, Yamaguchi-Shinozaki K, Carninci P, Hayashizaki Y and Shinozaki K 2001 Monitoring the expression pattern of 1,300 Arabidopsis genes under drought and cold stresses by using a full-length cDNA microarray. Plant Cell 13 61-72
-
(2001)
Plant Cell
, vol.13
, pp. 61-72
-
-
Seki, M.1
Narusaka, M.2
Abe, H.3
Kasuko, M.4
Yamaguchi-Shinozaki, K.5
Carninci, P.6
Hayashizaki, Y.7
Shinozaki, K.8
-
62
-
-
0036679053
-
Monitoring the expression profiles of 7,000 arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray
-
Seki M, Narusaka M, Ishida J, Nanjo T, Fujita M, Oono Y, Kamiya A, Nakajima M, et al. 2002 Monitoring the expression profiles of 7,000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray. Plant J. 31 279-292
-
(2002)
Plant J.
, vol.31
, pp. 279-292
-
-
Seki, M.1
Narusaka, M.2
Ishida, J.3
Nanjo, T.4
Fujita, M.5
Oono, Y.6
Kamiya, A.7
Nakajima, M.8
-
63
-
-
0032992297
-
Nitrogen management and the future of food: Lessons from the management of energy and carbon
-
Socolow RH 1999 Nitrogen management and the future of food: lessons from the management of energy and carbon. Proc. Natl. Acad. Sci. USA 96 6001-6008
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 6001-6008
-
-
Socolow, R.H.1
-
64
-
-
0032991130
-
The molecular physiological basis for the interaction between elevated carbon dioxide and nutrients
-
Stitt M and Krapp A 1999 The molecular physiological basis for the interaction between elevated carbon dioxide and nutrients. Plant Cell Environ. 22 583-622
-
(1999)
Plant Cell Environ.
, vol.22
, pp. 583-622
-
-
Stitt, M.1
Krapp, A.2
-
65
-
-
34347263491
-
Small RNAs as big players in plant abiotic stress responses and nutrient deprivation
-
Sunkar R, Chinnusamy V, Zhu J and Zhu JK 2007 Small RNAs as big players in plant abiotic stress responses and nutrient deprivation. Trends Plant Sci. 12 301-309
-
(2007)
Trends Plant Sci.
, vol.12
, pp. 301-309
-
-
Sunkar, R.1
Chinnusamy, V.2
Zhu, J.3
Zhu, J.K.4
-
66
-
-
33747505089
-
Posttranscriptional induction of two cu/Zn superoxide dismutase genes in arabidopsis is mediated by downregulation of miR398 and important for oxidative stress tolerance
-
Sunkar R, Kapoor A and Zhu JK 2006 Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and important for oxidative stress tolerance. Plant Cell 18 2051-2065
-
(2006)
Plant Cell
, vol.18
, pp. 2051-2065
-
-
Sunkar, R.1
Kapoor, A.2
Zhu, J.K.3
-
67
-
-
4043074968
-
Novel and stress-regulated micro-RNAs and other small RNAs from arabidopsis
-
Sunkar R and Zhu JK 2004 Novel and stress-regulated micro-RNAs and other small RNAs from Arabidopsis. Plant Cell 16 2001-2019
-
(2004)
Plant Cell
, vol.16
, pp. 2001-2019
-
-
Sunkar, R.1
Zhu, J.K.2
-
68
-
-
0035979317
-
Multiple transcription-factor genes are early targets of phytochrome A signaling
-
Tepperman JM, Zhu T, Chang HS, Wang X and Quail PH 2001 Multiple transcription-factor genes are early targets of phytochrome A signaling. Proc. Natl. Acad. Sci. USA 98 9437-9442
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 9437-9442
-
-
Tepperman, J.M.1
Zhu, T.2
Chang, H.S.3
Wang, X.4
Quail, P.H.5
-
69
-
-
33747770767
-
Genome-wide analysis of the structural genes regulating defense phenylpropanoid metabolism in populus
-
Tsai CJ, Harding SA, Tschaplinski TJ, Lindroth RL and Yuan Y 2006 Genome-wide analysis of the structural genes regulating defense phenylpropanoid metabolism in Populus. New Phytol. 172 47-62
-
(2006)
New Phytol.
, vol.172
, pp. 47-62
-
-
Tsai, C.J.1
Harding, S.A.2
Tschaplinski, T.J.3
Lindroth, R.L.4
Yuan, Y.5
-
70
-
-
0012771652
-
Acclimation of white lupin to phosphorus deficiency involves enhanced expression of genes related to organic acid metabolism
-
Uhde-Stone C, Gilbert G, Johnson JMF, Litjens R, Zinn KE, Temple SJ, Vance CP and Allan DL 2003 Acclimation of white lupin to phosphorus deficiency involves enhanced expression of genes related to organic acid metabolism. Plant Soil 248 99-116
-
(2003)
Plant Soil
, vol.248
, pp. 99-116
-
-
Uhde-Stone, C.1
Gilbert, G.2
Johnson, J.M.F.3
Litjens, R.4
Zinn, K.E.5
Temple, S.J.6
Vance, C.P.7
Allan, D.L.8
-
71
-
-
2442650370
-
The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development
-
Vaucheret H, Vazquez F, Crete P and Bartel DP 2004 The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development. Genes Dev. 18 1187-1197
-
(2004)
Genes Dev.
, vol.18
, pp. 1187-1197
-
-
Vaucheret, H.1
Vazquez, F.2
Crete, P.3
Bartel, D.P.4
-
72
-
-
0029833914
-
Genetic identification of a gene involved in constitutive, high affinity, nitrate transport in arabidopsis thaliana
-
Wang R and Crawford NM 1996 Genetic identification of a gene involved in constitutive, high affinity, nitrate transport in Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 93 9297-9301
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 9297-9301
-
-
Wang, R.1
Crawford, N.M.2
-
73
-
-
0033831570
-
Genomic analysis of a nutrient response in arabidopsis reveals diverse expression patterns and novel metabolic and potential regulatory genes that are induced by nitrate
-
Wang R, Guegler K, LaBrie ST and Crawford NM 2000 Genomic analysis of a nutrient response in Arabidopsis reveals diverse expression patterns and novel metabolic and potential regulatory genes that are induced by nitrate. Plant Cell 12 1491-1510
-
(2000)
Plant Cell
, vol.12
, pp. 1491-1510
-
-
Wang, R.1
Guegler, K.2
LaBrie, S.T.3
Crawford, N.M.4
-
74
-
-
0037783247
-
Microarray analysis of the nitrate response in arabidopsis roots and shoots reveals over 1,000 rapidly responding genes and new linkages to glucose, trehalose-6-phosphate, iron, and sulfate metabolism
-
Wang R, Okamoto M, Xing X and Crawford NM 2003 Microarray analysis of the nitrate response in Arabidopsis roots and shoots reveals over 1,000 rapidly responding genes and new linkages to glucose, trehalose-6-phosphate, iron, and sulfate metabolism. Plant Physiol. 132 556-567
-
(2003)
Plant Physiol.
, vol.132
, pp. 556-567
-
-
Wang, R.1
Okamoto, M.2
Xing, X.3
Crawford, N.M.4
-
75
-
-
16544369956
-
Genomic analysis of the nitrate response using a nitrate reductase-null mutant of arabidopsis
-
Wang R, Tischner R, Gutierrez RA, Hoffman M, Xing X, Chen M, Coruzzi G and Crawford NM 2004 Genomic analysis of the nitrate response using a nitrate reductase-null mutant of Arabidopsis. Plant Physiol. 136 2512-2522
-
(2004)
Plant Physiol.
, vol.136
, pp. 2512-2522
-
-
Wang, R.1
Tischner, R.2
Gutierrez, R.A.3
Hoffman, M.4
Xing, X.5
Chen, M.6
Coruzzi, G.7
Crawford, N.M.8
-
76
-
-
0034817855
-
Nitrate-induced genes in tomato roots. Array analysis reveals novel genes that may play a role in nitrogen nutrition
-
Wang YH, Garvin DF and Kochian LV 2001 Nitrate-induced genes in tomato roots. Array analysis reveals novel genes that may play a role in nitrogen nutrition. Plant Physiol. 127 345-359
-
(2001)
Plant Physiol.
, vol.127
, pp. 345-359
-
-
Wang, Y.H.1
Garvin, D.F.2
Kochian, L.V.3
-
77
-
-
0036850673
-
Rapid induction of regulatory and transporter genes in response to phosphorus, potassium, and iron deficiencies in tomato roots: Evidence for cross talk and root/rhizosphere-mediated signals
-
Wang YH, Garvin DF and Kochian LV 2002 Rapid induction of regulatory and transporter genes in response to phosphorus, potassium, and iron deficiencies in tomato roots: evidence for cross talk and root/rhizosphere-mediated signals. Plant Physiol. 130 1361-1370
-
(2002)
Plant Physiol.
, vol.130
, pp. 1361-1370
-
-
Wang, Y.H.1
Garvin, D.F.2
Kochian, L.V.3
-
78
-
-
0141796610
-
Transcriptomic analysis of metabolic changes by phosphorus stress in rice plant roots
-
Wasaki J, Yonetani R, Kuroda S, Shinano T, Yazaki J, Fujii F, Shimbo K, Yamamoto K, et al. 2003 Transcriptomic analysis of metabolic changes by phosphorus stress in rice plant roots. Plant Cell Environ. 26 1515-1523
-
(2003)
Plant Cell Environ.
, vol.26
, pp. 1515-1523
-
-
Wasaki, J.1
Yonetani, R.2
Kuroda, S.3
Shinano, T.4
Yazaki, J.5
Fujii, F.6
Shimbo, K.7
Yamamoto, K.8
-
80
-
-
0038038594
-
Phosphate starvation triggers distinct alterations of genome expression in arabidopsis roots and leaves
-
Wu P, Ma L, Hou X, Wang M, Wu Y, Liu F and Deng XW 2003 Phosphate starvation triggers distinct alterations of genome expression in Arabidopsis roots and leaves. Plant Physiol. 132 1260-1271
-
(2003)
Plant Physiol.
, vol.132
, pp. 1260-1271
-
-
Wu, P.1
Ma, L.2
Hou, X.3
Wang, M.4
Wu, Y.5
Liu, F.6
Deng, X.W.7
-
81
-
-
10844290766
-
A model-based background adjustment for oligonucleotide expression arrays
-
Wu ZJ, Irizarry RA, Gentleman R, Martinez-Murillo F and Spencer F 2004 A model-based background adjustment for oligonucleotide expression arrays. J. Am. Stat. Assn. 99 909-917
-
(2004)
J. Am. Stat. Assn.
, vol.99
, pp. 909-917
-
-
Wu, Z.J.1
Irizarry, R.A.2
Gentleman, R.3
Martinez-Murillo, F.4
Spencer, F.5
-
82
-
-
34447528701
-
Regulation of copper homeostasis by micro-RNA in arabidopsis
-
Yamasaki H, Abdel-Ghany SE, Cohu CM, Kobayashi Y, Shikanai T and Pilon M 2007 Regulation of copper homeostasis by micro-RNA in Arabidopsis. J. Biol. Chem. 282 16369-16378
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 16369-16378
-
-
Yamasaki, H.1
Abdel-Ghany, S.E.2
Cohu, C.M.3
Kobayashi, Y.4
Shikanai, T.5
Pilon, M.6
-
84
-
-
48249112537
-
Signaling components involved in plant responses to phosphate starvation
-
Yuan H and Liu D 2008 Signaling components involved in plant responses to phosphate starvation. J. Integr. Plant Biol. 50 849-859
-
(2008)
J. Integr. Plant Biol.
, vol.50
, pp. 849-859
-
-
Yuan, H.1
Liu, D.2
-
85
-
-
33646830110
-
Conservation and divergence of plant microRNA genes
-
Zhang B, Pan X, Cannon CH, Cobb GP, Anderson TA 2006a Conservation and divergence of plant microRNA genes. Plant J. 46 243-259
-
(2006)
Plant J.
, vol.46
, pp. 243-259
-
-
Zhang, B.1
Pan, X.2
Cannon, C.H.3
Cobb, G.P.4
Anderson, T.A.5
-
87
-
-
0032536001
-
An arabidopsis MADS box gene that controls nutrient-induced changes in root architecture
-
Zhang H and Forde B 1998 An Arabidopsis MADS box gene that controls nutrient-induced changes in root architecture. Science 279 407-409
-
(1998)
Science
, vol.279
, pp. 407-409
-
-
Zhang, H.1
Forde, B.2
-
88
-
-
23144458275
-
MIRU: An automated plant miRNA target prediction server
-
Zhang Y 2005 miRU: an automated plant miRNA target prediction server. Nucleic Acids Res. 33W701-704
-
(2005)
Nucleic Acids Res.
-
-
Zhang, Y.1
-
89
-
-
0141725448
-
Global analysis of gene expression using gene chip microarrays
-
Zhu T 2003 Global analysis of gene expression using Gene Chip microarrays. Curr. Opin. Plant Biol. 6 1-8
-
(2003)
Curr. Opin. Plant Biol.
, vol.6
, pp. 1-8
-
-
Zhu, T.1
-
90
-
-
0035055251
-
Toward elucidating the global gene expression patterns of developing arabidopsis: Parallel analysis of 8,300 gene by a high-density oligonucleotide probe array
-
Zhu T, Budworth P, Han B, Brown D, Chang HS, Zou G and Wang X 2001 Toward elucidating the global gene expression patterns of developing Arabidopsis: parallel analysis of 8,300 gene by a high-density oligonucleotide probe array. Plant Physiol. Biochem. 39 221-242
-
(2001)
Plant Physiol. Biochem.
, vol.39
, pp. 221-242
-
-
Zhu, T.1
Budworth, P.2
Han, B.3
Brown, D.4
Chang, H.S.5
Zou, G.6
Wang, X.7
|