메뉴 건너뛰기




Volumn 12, Issue , 2012, Pages

Changes in human gut flora with age: An Indian familial study

Author keywords

Firmicutes Bacteroidetes ratio; Human gut microflora; Indian population; YY paradox

Indexed keywords

RNA 16S;

EID: 84866565238     PISSN: None     EISSN: 14712180     Source Type: Journal    
DOI: 10.1186/1471-2180-12-222     Document Type: Article
Times cited : (41)

References (50)
  • 1
    • 77949265935 scopus 로고    scopus 로고
    • The environment within: How gut microbiota may influence metabolism and body composition
    • 10.1007/s00125-010-1662-7 20101384
    • The environment within: how gut microbiota may influence metabolism and body composition. Vrieze A, Holleman F, Zoetendal EG, de Vos WM, Hoekstra JBL, Nieuwdorp M, Diabetologia 2010 53 606 613 10.1007/s00125-010-1662-7 20101384
    • (2010) Diabetologia , vol.53 , pp. 606-613
    • Vrieze, A.1    Holleman, F.2    Zoetendal, E.G.3    De Vos, W.M.4    Hoekstra, J.B.L.5    Nieuwdorp, M.6
  • 3
    • 0036399823 scopus 로고    scopus 로고
    • How host-microbial interactions shape the nutrient environment of the mammalian intestine
    • DOI 10.1146/annurev.nutr.22.011602.092259
    • How host-microbial interactions shape the nutrient environment of the mammalian intestine. Hooper LV, Midtvedt T, Gordon JI, Annu Rev Nutr 2002 22 283 307 10.1146/annurev.nutr.22.011602.092259 12055347 (Pubitemid 35221463)
    • (2002) Annual Review of Nutrition , vol.22 , pp. 283-307
    • Hooper, L.V.1    Midwedt, T.2    Gordon, J.I.3
  • 5
    • 77955077899 scopus 로고    scopus 로고
    • Advances in understanding the interaction between the gut microbiota and adaptive mucosal immune responses
    • 20948806
    • Advances in understanding the interaction between the gut microbiota and adaptive mucosal immune responses. Neish AS, Denning TL, F1000 Biology Reports 2010 2 27 20948806
    • (2010) F1000 Biology Reports , vol.2 , pp. 27
    • Neish, A.S.1    Denning, T.L.2
  • 6
    • 0035124967 scopus 로고    scopus 로고
    • Age and disease related changes in intestinal bacterial populations assessed by cell culture, 16S rRNA abundance, and community cellular fatty acid profiles
    • DOI 10.1136/gut.48.2.198
    • Age and disease related changes in intestinal bacterial populations assessed by cell culture, 16S rRNA abundance, and community cellular fatty acid profiles. Hopkins MJ, Sharp R, Macfarlane GT, Gut 2001 48 198 205 10.1136/gut.48.2.198 11156640 (Pubitemid 32141843)
    • (2001) Gut , vol.48 , Issue.2 , pp. 198-205
    • Hopkins, M.J.1    Sharp, R.2    Macfarlane, G.T.3
  • 7
    • 51849086745 scopus 로고    scopus 로고
    • Predominant role of host genetics in controlling the composition of gut microbiota
    • 10.1371/journal.pone.0003064 18725973
    • Predominant Role of Host Genetics in Controlling the Composition of Gut Microbiota. Khachatryan ZA, Ktsoyan ZA, Manukyan GP, Kelly D, Ghazaryan KA, et al. PLoS One 2008 3 8 3064 10.1371/journal.pone.0003064 18725973
    • (2008) PLoS One , vol.3 , Issue.8 , pp. 53064
    • Khachatryan, Z.A.1    Ktsoyan, Z.A.2    Manukyan, G.P.3    Kelly, D.4    Ghazaryan, K.A.5
  • 8
    • 77950669604 scopus 로고    scopus 로고
    • The effect of diet on the human gut microbiome: A metagenomic analysis in humanized gnotobiotic mice
    • 10.1126/scitranslmed.3000322 20368178
    • The Effect of Diet on the Human Gut Microbiome: A Metagenomic Analysis in Humanized Gnotobiotic Mice. Turnbaugh PJ, Ridaura VK, Faith JJ, Rey FE, Knight R, Gordon JI, Sci Transl Med 2009 1 6 6ra14 10.1126/scitranslmed.3000322 20368178
    • (2009) Sci Transl Med , vol.1 , Issue.6
    • Turnbaugh, P.J.1    Ridaura, V.K.2    Faith, J.J.3    Rey, F.E.4    Knight, R.5    Gordon, J.I.6
  • 10
    • 0014828007 scopus 로고
    • The anaerobic bacteria flora of the mouse cecum
    • 10.1084/jem.132.2.251 4927597
    • The anaerobic bacteria flora of the mouse cecum. Gordon JH, Dubos R, J Exp Med 1970 132 251 260 10.1084/jem.132.2.251 4927597
    • (1970) J Exp Med , vol.132 , pp. 251-260
    • Gordon, J.H.1    Dubos, R.2
  • 11
    • 0017075004 scopus 로고
    • Anaerobic bacteria from the large intestine of mice
    • 938042
    • Anaerobic bacteria from the large intestine of mice. Harris MA, Reddy CA, Carter GR, Appl Environ Microbiol 1976 31 907 912 938042
    • (1976) Appl Environ Microbiol , vol.31 , pp. 907-912
    • Harris, M.A.1    Reddy, C.A.2    Carter, G.R.3
  • 12
  • 15
    • 33845874101 scopus 로고    scopus 로고
    • An obesity-associated gut microbiome with increased capacity for energy harvest
    • DOI 10.1038/nature05414, PII NATURE05414
    • An obesity-associated gut microbiome with increased capacity for energy harvest. Turnbaugh PJ, Ley RE, Mahowald MA, Magrini V, Mardis ER, Gordon JI, Nature 2006 444 1027 1031 10.1038/nature05414 17183312 (Pubitemid 46018515)
    • (2006) Nature , vol.444 , Issue.7122 , pp. 1027-1031
    • Turnbaugh, P.J.1    Ley, R.E.2    Mahowald, M.A.3    Magrini, V.4    Mardis, E.R.5    Gordon, J.I.6
  • 17
    • 67650445962 scopus 로고    scopus 로고
    • Shifts in Clostridia, Bacteroides and immunoglobulin-coating fecal bacteria associated with weight loss in obese adolescents
    • 10.1038/ijo.2008.260
    • Shifts in Clostridia, Bacteroides and immunoglobulin-coating fecal bacteria associated with weight loss in obese adolescents. Nadal I, Santacruz A, Marcos A, Warnberg J, Garagorri M, Moreno LA, Martin-Matillas M, Campoy C, et al. Int J Obes (Lond) 2009 33 758 767 10.1038/ijo.2008.260
    • (2009) Int J Obes (Lond) , vol.33 , pp. 758-767
    • Nadal, I.1    Santacruz, A.2    Marcos, A.3    Warnberg, J.4    Garagorri, M.5    Moreno, L.A.6    Martin-Matillas, M.7    Campoy, C.8
  • 19
    • 77949393654 scopus 로고    scopus 로고
    • Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults
    • 10.1371/journal.pone.0009085 20140211
    • Gut Microbiota in Human Adults with Type 2 Diabetes Differs from Non-Diabetic Adults. Larsen N, Vogensen FK, van den Berg FWJ, Nielsen DS, Andreasen AS, et al. PLoS One 2010 5 2 9085 10.1371/journal.pone.0009085 20140211
    • (2010) PLoS One , vol.5 , Issue.2 , pp. 59085
    • Larsen, N.1    Vogensen, F.K.2    Van Den Berg, F.W.J.3    Nielsen, D.S.4    Andreasen, A.S.5
  • 20
    • 34547129847 scopus 로고    scopus 로고
    • Development of the human infant intestinal microbiota
    • DOI 10.1371/journal.pbio.0050177
    • Development of the Human Infant Intestinal Microbiota. Palmer C, Bik EM, DiGiulio DB, Relman DA, Brown PO, PLoS Biol 2007 5 7 177 10.1371/journal.pbio. 0050177 17594176 (Pubitemid 47105346)
    • (2007) PLoS Biology , vol.5 , Issue.7 , pp. 1556-1573
    • Palmer, C.1    Bik, E.M.2    DiGiulio, D.B.3    Relman, D.A.4    Brown, P.O.5
  • 21
    • 0346687665 scopus 로고    scopus 로고
    • The Y-Y paradox
    • DOI 10.1016/S0140-6736(03)15269-5
    • The Y-Y paradox. Yajnik CS, Yudkin JS, Lancet 2004 363 9403 163 10.1016/S0140-6736(03)15269-5 14726172 (Pubitemid 38068336)
    • (2004) Lancet , vol.363 , Issue.9403 , pp. 163
    • Yajnik, C.S.1    Yudkin, J.S.2
  • 24
    • 3042526143 scopus 로고    scopus 로고
    • Studies on cultured and uncultured microbiota of wild Culex quinquefasciatus mosquito midgut based on 16S ribosomal RNA gene analysis
    • Studies on cultured and uncultured microbiota of wild Culex quinquefasciatus mosquito midgut based on 16s ribosomal RNA gene analysis. Pidiyar VJ, Jangid K, Patole MS, Shouche YS, AmJTrop Med Hyg 2004 70 597 603 (Pubitemid 38802386)
    • (2004) American Journal of Tropical Medicine and Hygiene , vol.70 , Issue.6 , pp. 597-603
    • Pidiyar, V.J.1    Jangid, K.2    Patole, M.S.3    Shouche, Y.S.4
  • 25
    • 0026055518 scopus 로고
    • Preliminary Evaluation of Biolog, a Carbon Source Utilization Method for Bacterial Identification
    • 1864931
    • Preliminary Evaluation of Biolog, a Carbon Source Utilization Method for Bacterial Identification. Miller JM, Rhoden D, Journal Of Clinical Microbiology 1991 29 6 1143 1147 1864931
    • (1991) Journal of Clinical Microbiology , vol.29 , Issue.6 , pp. 1143-1147
    • Miller, J.M.1    Rhoden, D.2
  • 26
    • 0030036446 scopus 로고    scopus 로고
    • Phylogenetic compositions of bacterioplankton from two California estuaries compared by denaturing gradient gel electrophoresis of 16S rDNA fragments
    • Phylogenetic comparisons of bacterioplankton from two California estuaries compared by denaturing gradient gel electrophoresis of 16S rDNA fragments. Murray AE, Hollibaugh JT, Orrego C, Appl Environ Microbiol 1996 62 2676 2680 8779608 (Pubitemid 26235282)
    • (1996) Applied and Environmental Microbiology , vol.62 , Issue.7 , pp. 2676-2680
    • Murray, A.E.1    Hollibaugh, J.T.2    Orrego, C.3
  • 27
    • 33751005306 scopus 로고    scopus 로고
    • Advantage of using inosine at the 3′ termini of 16S rRNA gene universal primers for the study of microbial diversity
    • DOI 10.1128/AEM.00849-06
    • Advantage of using inosine at the 3 termini of 16S rRNA gene universal primers for the study of microbial diversity. Ben-Dov E, Shapiro OH, Siboni N, Kushmaro A, Appl Environ Microbiol 2006 72 6902 6906 10.1128/AEM.00849-06 16950904 (Pubitemid 44748399)
    • (2006) Applied and Environmental Microbiology , vol.72 , Issue.11 , pp. 6902-6906
    • Ben-Dov, E.1    Shapiro, O.H.2    Siboni, N.3    Kushmaro, A.4
  • 29
    • 33748799671 scopus 로고    scopus 로고
    • New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras
    • DOI 10.1128/AEM.00556-06
    • New Screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras. Ashelford KE, Chuzhanova NA, Fry JC, Jones AJ, Weightman AJ, Appl Environ Microbiol 2006 72 9 5734 5741 10.1128/AEM.00556-06 16957188 (Pubitemid 44414595)
    • (2006) Applied and Environmental Microbiology , vol.72 , Issue.9 , pp. 5734-5741
    • Ashelford, K.E.1    Chuzhanova, N.A.2    Fry, J.C.3    Jones, A.J.4    Weightman, A.J.5
  • 30
    • 15444362001 scopus 로고    scopus 로고
    • Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
    • DOI 10.1128/AEM.71.3.1501-1506.2005
    • Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Schloss PD, Handelsman J, Appl Environ Microbiol 2005 71 3 1501 6 10.1128/AEM.71.3.1501-1506.2005 15746353 (Pubitemid 40396689)
    • (2005) Applied and Environmental Microbiology , vol.71 , Issue.3 , pp. 1501-1506
    • Schloss, P.D.1    Handelsman, J.2
  • 31
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • DOI 10.1093/molbev/msm092
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Tamura K, Dudley J, Nei M, Kumar S, Mol Biol Evol 2007 24 8 1596 1599 10.1093/molbev/msm092 17488738 (Pubitemid 47236692)
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.8 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 32
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • 3447015
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees. Saitou N, Nei M, Mol Biol Evol 1987 4 406 425 3447015
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 33
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • DOI 10.1007/BF01731581
    • A Simple Method for Estimating the Evolutionary Rate of Base Substitutions Through Comparative Studies of Nucleotide Sequences. Kimura M, J Mol Evol 1980 16 111 120 10.1007/BF01731581 7463489 (Pubitemid 11166431)
    • (1980) Journal of Molecular Evolution , vol.16 , Issue.2 , pp. 111-120
    • Kimura, M.1
  • 35
    • 85027927719 scopus 로고    scopus 로고
    • Enterotypes of the human gut microbiome
    • 10.1038/nature09944 21508958
    • Enterotypes of the human gut microbiome. Arumugam M, Raes J, Pelletier E, Le Paslier D, Yamada T, et al. Nature 2011 473 7346 174 80 10.1038/nature09944 21508958
    • (2011) Nature , vol.473 , Issue.7346 , pp. 174-180
    • Arumugam, M.1    Raes, J.2    Pelletier, E.3    Le Paslier, D.4    Yamada, T.5
  • 36
    • 84864372801 scopus 로고    scopus 로고
    • Molecular typing of fecal eukaryotic microbiota of human infants and their respective mothers
    • 10.1007/s12038-012-9197-3 22581327
    • Molecular typing of fecal eukaryotic microbiota of human infants and their respective mothers. Pandey PK, Siddharth J, Verma P, Bavdekar A, Patole MS, Shouche YS, J Biosci 2012 37 221 226 10.1007/s12038-012-9197-3 22581327
    • (2012) J Biosci , vol.37 , pp. 221-226
    • Pandey, P.K.1    Siddharth, J.2    Verma, P.3    Bavdekar, A.4    Patole, M.S.5    Shouche, Y.S.6
  • 38
    • 78751493280 scopus 로고    scopus 로고
    • Faecal bifidobacteria in Indian neonates & the effect of asymptomatic rotavirus infection during the first month of life
    • 21245621
    • Faecal bifidobacteria in Indian neonates & the effect of asymptomatic rotavirus infection during the first month of life. Balamurugan R, Magne F, Balakrishnan D, Suau A, Ramani S, Kang G, Ramakrishna BS, Indian J Med Res 2010 132 721 727 21245621
    • (2010) Indian J Med Res , vol.132 , pp. 721-727
    • Balamurugan, R.1    Magne, F.2    Balakrishnan, D.3    Suau, A.4    Ramani, S.5    Kang, G.6    Ramakrishna, B.S.7
  • 40
    • 67650021209 scopus 로고    scopus 로고
    • Microbial community profiling for human microbiome projects: Tools, techniques, and challenges
    • 10.1101/gr.085464.108 19383763
    • Microbial community profiling for human microbiome projects: Tools, techniques, and challenges. Hamady M, Knight R, Genome Res 2009 19 1141 1152 10.1101/gr.085464.108 19383763
    • (2009) Genome Res , vol.19 , pp. 1141-1152
    • Hamady, M.1    Knight, R.2
  • 42
    • 79951836666 scopus 로고    scopus 로고
    • Characterization of Bacteria in Biopsies of Colon and Stools by High Throughput Sequencing of the V2 Region of Bacterial 16S rRNA Gene in Human
    • 10.1371/journal.pone.0016952 21347324
    • Characterization of Bacteria in Biopsies of Colon and Stools by High Throughput Sequencing of the V2 Region of Bacterial 16S rRNA Gene in Human. Momozawa Y, Deffontaine V, Louis E, Medrano JF, PLoS One 2011 6 2 16952 10.1371/journal.pone.0016952 21347324
    • (2011) PLoS One , vol.6 , Issue.2 , pp. 516952
    • Momozawa, Y.1    Deffontaine, V.2    Louis, E.3    Medrano, J.F.4
  • 43
    • 84865055757 scopus 로고    scopus 로고
    • Analysis of the gut microbiota in the old order amish and its relation to the metabolic syndrome
    • 10.1371/journal.pone.0043052 22905200
    • Analysis of the Gut Microbiota in the Old Order Amish and Its Relation to the Metabolic Syndrome. Zupancic ML, Cantarel BL, Liu Z, Drabek EF, Ryan KA, et al. PLoS One 2012 7 8 43052 10.1371/journal.pone.0043052 22905200
    • (2012) PLoS One , vol.7 , Issue.8 , pp. 543052
    • Zupancic, M.L.1    Cantarel, B.L.2    Liu, Z.3    Drabek, E.F.4    Ryan, K.A.5
  • 44
    • 77955602581 scopus 로고    scopus 로고
    • Through ageing, and beyond: Gut microbiota and inflammatory status in seniors and centenarians
    • 10.1371/journal.pone.0010667 20498852
    • Through Ageing, and Beyond: Gut Microbiota and Inflammatory Status in Seniors and Centenarians. Biagi E, Nylund L, Candela M, Ostan R, Bucci L, et al. PLoS One 2010 5 5 10667 10.1371/journal.pone.0010667 20498852
    • (2010) PLoS One , vol.5 , Issue.5 , pp. 510667
    • Biagi, E.1    Nylund, L.2    Candela, M.3    Ostan, R.4    Bucci, L.5
  • 45
    • 33745075605 scopus 로고    scopus 로고
    • Low species diversity and high interindividual variability in faeces of preterm infants as revealed by sequences of 16S rRNA genes and PCR-temporal temperature gradient gel electrophoresis profiles
    • DOI 10.1111/j.1574-6941.2006.00097.x
    • Low species diversity and high interindividual variability in feces of preterm infants as revealed by sequences of 16S rRNA genes and PCR-temporal temperature gradient gel electrophoresis profiles. Magne F, Abe ly M, Boyer F, Morville P, Pochard P, Suau A, FEMS Microbiol Ecol 2006 57 128 138 10.1111/j.1574-6941.2006.00097.x 16819956 (Pubitemid 43880249)
    • (2006) FEMS Microbiology Ecology , vol.57 , Issue.1 , pp. 128-138
    • Magne, F.1    Abely, M.2    Boyer, F.3    Morville, P.4    Pochart, P.5    Suau, A.6
  • 47
    • 2942592005 scopus 로고    scopus 로고
    • Characterization of bacterial communities in feces from healthy elderly volunteers and hospitalized elderly patients by using real-time PCR and effects of antibiotic treatment on the fecal microbiota
    • DOI 10.1128/AEM.70.6.3575-3581.2004
    • Characterization of bacterial communities in feces from healthy elderly volunteers and hospitalized elderly patients by using real-time PCR and effects of antibiotic treatment on the fecal microbiota. Bartosch S, Fite A, Macfarlane GT, Mcmurdo MET, Appl Environ Microbiol 2004 70 3575 3581 10.1128/AEM.70.6.3575- 3581.2004 15184159 (Pubitemid 38745906)
    • (2004) Applied and Environmental Microbiology , vol.70 , Issue.6 , pp. 3575-3581
    • Bartosch, S.1    Fite, A.2    Macfarlane, G.T.3    McMurdo, M.E.T.4
  • 48
    • 12844251441 scopus 로고    scopus 로고
    • Quantification of Bifidobacterium spp., Escherichia coli and Clostridium difficile in faecal samples of breast-fed and formula-fed infants by real-time PCR
    • DOI 10.1016/j.femsle.2004.11.052, PII S0378109704008870
    • Quantification of Bifidobacterium spp., Escherichia coli and Clostridium difficile in faecal samples of breast-fed and formula-fed infants by real-time PCR. Penders J, Vink C, Driessen C, London N, Thijs C, et al. FEMS Microbiol Lett 2005 243 141 147 10.1016/j.femsle.2004.11.052 15668012 (Pubitemid 40164400)
    • (2005) FEMS Microbiology Letters , vol.243 , Issue.1 , pp. 141-147
    • Penders, J.1    Vink, C.2    Driessen, C.3    London, N.4    Thijs, C.5    Stobberingh, E.E.6
  • 49
    • 0036146824 scopus 로고    scopus 로고
    • Determination of bacterial load by real-time PCR using a broad-range (universal) probe and primers set
    • Determination of bacterial load by real-time PCR using a broad-range (universal) probe and primers set. Nadkarni MA, Martin FE, Jacques NA, Hunter N, Microbiology-Sgm 2002 148 257 266 (Pubitemid 34083204)
    • (2002) Microbiology , vol.148 , Issue.1 , pp. 257-266
    • Nadkarni, M.A.1    Martin, F.E.2    Jacques, N.A.3    Hunter, N.4
  • 50
    • 9644268216 scopus 로고    scopus 로고
    • Development of an extensive set of 16S rDNA-targeted primers for quantification of pathogenic and indigenous bacteria in faecal samples by real-time PCR
    • DOI 10.1111/j.1365-2672.2004.02409.x
    • Development of an extensive set of 16S rDNA-targeted primers for quantification of pathogenicand indigenous bacteria in faecal samples by real-time PCR. Rinttila T, Kassinen A, Malinen E, Krogius L, Palva A, J Appl Microbiol 2004 97 1166 1177 10.1111/j.1365-2672.2004.02409.x 15546407 (Pubitemid 39573940)
    • (2004) Journal of Applied Microbiology , vol.97 , Issue.6 , pp. 1166-1177
    • Rinttila, T.1    Kassinen, A.2    Malinen, E.3    Krogius, L.4    Palva, A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.