Molecular typing of fecal eukaryotic microbiota of human infants and their respective mothers

Journal of Biosciences

Volumn 37, Issue 2, 2012, Pages 221-226

  Pandey, Prashant K ^a   Siddharth, Jay ^a   Verma, Pankaj ^a   Bavdekar, Ashish ^b   Patole, Milind S ^a   Shouche, Yogesh S ^a  

^a NATIONAL CENTRE FOR CELL SCIENCE   (India)

^b KEM HOSPITAL   (India)

Author keywords

18S rRNA library; Gastrointestinal tract; Micro eukaryotic diversity

Indexed keywords

DNA 18S; RNA 18S;

DIGESTIVE SYSTEM; DISEASE INCIDENCE; DNA; EUKARYOTE; FECAL COLIFORM; GENE; MICROBIAL ACTIVITY;

ARTICLE; ARTIFICIAL MILK; BLASTOCYSTIS; BREAST FEEDING; COLONY FORMATION; CONTROLLED STUDY; DNA SEQUENCE; FECES ANALYSIS; FUNGUS; GENE IDENTIFICATION; GENETIC VARIABILITY; HUMAN; INFANT; INFANT FEEDING; INTESTINE FLORA; MICROBIAL GROWTH; MICROBIAL IDENTIFICATION; MOLECULAR TYPING; MOTHER CHILD RELATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY;

ADULT; BIODIVERSITY; BLASTOCYSTIS; BREAST FEEDING; FECES; FEMALE; FUNGI; GASTROINTESTINAL TRACT; HUMANS; INFANT; INFANT FORMULA; METAGENOME; MOLECULAR TYPING; MOTHERS; RNA, RIBOSOMAL, 18S;

BLASTOCYSTIS; EUKARYOTA; FUNGI;

EID: 84864372801     PISSN: 02505991     EISSN: 09737138     Source Type: Journal    
DOI: 10.1007/s12038-012-9197-3     Document Type: Article

References (27)

1. Chao A 1987 Estimating the population size for capture-recapture data with unequal catchability. Biometrics 43 783-791
2. Chen TL, Chan CC, Chen HP, Fung CP, Lin CP, Chan WL and Liu CY 2003 Clinical characteristics and endoscopic findings associated with Blastocystis hominis in healthy adults. Am. J. Trop. Med. Hyg. 69 213-216
3. Duchmann R, Kaiser I, Hermann E, Mayet W, Ewe K, and Meyer zum Büschenfelde KH 1995 Tolerance exists towards resident intestinal flora but is broken in active inflammatory bowel disease (IBD). Clin. Exp. Immunol. 102 448-455
4. Felsenstein J 1989 PHYLIP - Phylogeny Inference Package (version 3.2). Cladistics 5 164-166
5. Finegold SM, Sutter VL and Mathisen GE 1983 Normal indigenous intestinal flora; in Human intestinal microflora in health and disease (eds) DJ Hentges (New York: Academic press) pp 3-31
6. Forsburg CW, Cheng KJ and White BA 1997 Polysaccharide degradation in the rumen and large intestine; in Gastrointestinal microbiology. Gastrointestinal ecosystems and fermentations (ed) RI Mackie and BA White (New York: Chapman & Hall) pp 319-379
7. Francisco G and Juan RM 2003 Gut flora in health and disease. Lancet 361 512-519
8. Good IJ 1953 The population frequencies of species and the estimation of population parameters. Biometrika 40 237-264
9. Hobson PN and Wallace RJ 1982 Microbial ecology and active ties in the rumen. Crit. Rev. Microbiol. 9 165-225
10. Hughes JB, Hellmann JJ, Ricketts TH and Bohannan BJ 2001 Counting the uncountable: statistical approaches to estimating microbial diversity. Appl. Environ. Microbiol. 67 4399-4406
11. Krebs CJ 1998 Ecological methodology 2nd edition (Menlo Park, CA: Benjamin/Cummings)
12. Kuhbacher T, Ott SJ, Helwig U, Mimura T, Rizzello F and Kleessen B 2006 Bacterial and fungal microbiota in relation to probiotic therapy (VSL#3) inpouchitis. Gut 55 833-841
13. Leelayoova S, Vithayasai N, Watanaveeradej V, Chotpitayasunondh T, Therapong V,Naaglor T and MungthinM2001Intestinal microsporidiosis in HIV-infected children with acute and chronic diarrhoea. Southeast Asian J. Trop. Med. Public Health 32 33-37
14. Macpherson A, Khoo UY, Forgacs I, Philpott-Howard J and Bjarnason I 1996 Mucosal antibodies in inflammatory bowel disease are directed against intestinal bacteria. Gut 38 365-375
15. Magurran AE 1996 Ecological diversity and its measurement (London: Chapman and Hall)
16. Ogimoto K and Imai S 1981 Atlas of rumen microbiology (Tokyo: Japan Science Society Press)
17. Prins RA 1991 Rumen ciliates and their function; in Rumen microbial metabolism and microbial digestion (ed) JP Jouany (Paris: Institut National de la Recherche Agronomique) pp 39- 52
18. Rao K, Sekar U, Iraivan KT, Abraham G and Soundararajan P 2003 Blastocystis hominis an emerging cause of diarrhoea in renal transplant recipients. JAPI 51 719-721
19. Scanlan PD and Marchesi JR 2008 Micro-eukaryotic diversity of the human distal gut microbiota: qualitative assessment using culture-dependent and -independent analysis of faeces. ISME J. 12 1183-1193
20. Schloss PD and Handelsman J 2005 Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl. Environ. Microbiol. 71 1501-1506
21. Scupham AJ, Presley LL, Wei B, Bent E, Griffith N, McPherson M, Zhu F, Oluwadara O, Rao N, Braun J and Borneman J 2006 Abundant and diverse fungal microbiota in the murine intestine. Appl. Environ. Microbiol. 72 793-801
22. Silberman JD, Sogin ML, Leipe DD and Clark CG 1996 Human parasite finds taxonomic home. Nature 380 398
23. Singleton DR, Furlong MA, Rathbun SL and Whitman WB 2001 Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples. Appl. Environ. Microbiol. 67 4374-4376
24. Stevens CE and Hume ID 1998 Contributions of microbes in vertebrate gastrointestinal tract to production and conservation of nutrients. Physiol. Rev. 78 393-427
25. Suau A, Bonnet R and Sutren M 1999 Direct analysis of genes encoding 16SrRNA from complex communities reveals many novel molecular species within the human gut. Appl. Environ. Microbiol. 65 4799-4807
26. Weisburg WG, Barns SM, Pelletier DA and Lane DJ 1991 16S ribosomal DNA amplification for phylogenetic study. J. Bacteriol. 173 697-703
27. Wilms R, Sass H, Köpke B, Köster J, Cypionka H and Engelen B 2006 Specific bacterial, archaeal, and eukaryotic communities in tidal-flat sediments along a vertical profile of several meters. Appl. Environ. Microbiol. 72 2756-2764