Tramps, narrow endemics and morphologically cryptic species in the epiphyllous liverwort Diplasiolejeunea

Molecular Phylogenetics and Evolution

Volumn 65, Issue 2, 2012, Pages 582-594

  Dong, Shanshan ^a,b   Schäfer Verwimp, Alfons ^c   Meinecke, Philipp ^a   Feldberg, Kathrin ^a   Bombosch, Andrea ^a   Pócs, Tamás ^d   Schmidt, Alexander R ^b   Reitner, Joachim ^b   Schneider, Harald ^e   Heinrichs, Jochen ^a  

^a UNIVERSITY OF GÖTTINGEN   (Germany)

^b UNIVERSITY OF GÖTTINGEN   (Germany)

^c Mittlere Letten 11   (Germany)

^d ESZTERHÁZY KÁROLY UNIVERSITY   (Hungary)

^e DEPARTMENT OF LIFE SCIENCES   (United Kingdom)

Author keywords

Classification; Dispersal; Lejeuneaceae; Phylogenetic biogeography; Porellales

Indexed keywords

CHLOROPLAST DNA; PLANT DNA; RIBOSOMAL SPACER DNA;

ARTICLE; CELL NUCLEUS; CLASSIFICATION; DNA SEQUENCE; GENETICS; LIVERWORT; MOLECULAR EVOLUTION; PHYLOGENY; SEQUENCE ALIGNMENT; SPECIES DIFFERENTIATION;

CELL NUCLEUS; DNA, CHLOROPLAST; DNA, PLANT; DNA, RIBOSOMAL SPACER; EVOLUTION, MOLECULAR; GENETIC SPECIATION; HEPATOPHYTA; PHYLOGENY; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA;

COLOLEJEUNEA; COLURA; DIPLASIOLEJEUNEA; DIPLASIOLEJEUNEA RUDOLPHIANA; LEJEUNEACEAE; MARCHANTIOPHYTA; PORELLALES;

EID: 84866165122     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2012.07.009     Document Type: Article

References (88)

1. Ahonen I., Muonen J., Piippo S. Inferring the phylogeny of Lejeuneaceae: a first appraisal of molecular data. Bryologist 2003, 106:297-308.
2. Antonelli A., Sanmartin I. Why are there so many plant species in the Neotropics?. Taxon 2011, 60:403-414.
3. Bartish I.V., Antonelli A., Richardson J.E., Swenson U. Vicariance or long-distance dispersal: historical biogeography of the pantropical subfamily Chrysophylloideae (Sapotaceae). J. Biogeogr. 2011, 38:177-190.
4. Benavides J.C., Sastre-De Jésus I. Diversity and rarity of epiphyllous bryophytes in a superhumid tropical lowland forest of Chocó-Colombia. Cryptog. Bryol. 2011, 32:119-133.
5. Cornelissen J.H.C., Ter Steege H. Distribution and ecology of epiphytic bryophytes and lichens in dry evergreen forest of Guyana. J. Trop. Ecol. 1989, 5:131-150.
6. Crandall-Stotler B., Stotler R.E., Long D.G. Phylogeny and classification of the Marchantiophyta. Edinburgh J. Bot. 2009, 66:155-198.
7. Crum H.A. The geographic origins of the mosses of North America's Eastern deciduous forest. J. Hattori Bot. Lab. 1972, 35:269-298.
8. Dayrat B. Towards integrative taxonomy. Biol. J. Linn. Soc. 2005, 85:407-415.
9. De Queiroz K. Species concepts and species delimitation. Syst. Biol. 2007, 56:879-886.
10. Devos N., Vanderpoorten A. Range disjunctions, speciation, and morphological transformation rates in the liverwort genus Leptoscyphus. Evolution 2009, 63:779-791.
11. Feldberg K., Hentschel J., Wilson R., Rycroft D.S., Glenny D., Heinrichs J. Phylogenetic biogeography of the leafy liverwort Herbertus (Jungermanniales, Herbertaceae) based on nuclear and chloroplast DNA sequence data: correlation between genetic variation and geographical distribution. J. Biogeogr. 2007, 34:688-698.
12. Feldberg K., Váňa J., Long D.G., Shaw J., Hentschel J., Heinrichs J. A phylogeny of Adelanthaceae (Jungermanniales, Marchantiophyta) based on nuclear and chloroplast DNA markers, with comments on classification, cryptic speciation and biogeography. Molec. Phylogen. Evol. 2010, 55:293-304.
13. Forrest L.L., Salazar Allen N., Gudiño J.A., Korpelainen H., Long D.G. Molecular and morphological evidence for distinct species in Dumortiera (Dumortieraceae). Bryologist 2011, 114:102-115.
14. Fuselier L., Davison P.G., Clements M., Shaw B., Devos N., Heinrichs J., Hentschel J., Sabovljevic M., Szövenyi P., Schütte S., Hofbauer W., Shaw A.J. Phylogeographic analyses reveal distinct lineages of Metzgeria furcata and M. conjugata (Metzgeriaceae) in Europe and North America. Biol. J. Linn. Soc. 2009, 98:745-756.
15. Goldman N. Statistical tests of models of DNA substitution. J. Molec. Evol. 1993, 36:182-198.
16. Givnish T.J., Millam K.C., Evans T.M., Hall J.C., Pires J.C., Berry P.E., Sytsma K.J. Ancient vicariance or recent long-distance dispersal? Inferences about phylogeny and South American-African disjunctions in Rapateaceae and Bromeliaceae based on ndhF sequence data. Int. J. Plant Sci. 2004, 165(suppl):S35-S54.
17. Gradstein S.R. The taxonomic diversity of epiphyllous bryophytes. Abstr. Bot. 1997, 21:15-19.
18. Gradstein S.R., Churchill S.P., Salazar-Allen N. Guide to the bryophytes of tropical America. Mem. New York Bot. Gard. 2001, 86:1-577.
19. Gradstein S.R., Ilkiu-Borges A.L., Vanderpoorten A. Habitat speciation triggers the evolution of unusual morphologies - the case of Cololejeunea stotleriana sp. nov. from Ecuador. Bryologist 2011, 114:9-22.
20. Gradstein S.R., Wilson R., Ilkiu-Borges A.L., Heinrichs J. Phylogenetic relationships and neotenic evolution of Metzgeriopsis (Lejeuneaceae) based on chloroplast DNA sequences and morphology. Bot. J. Linn. Soc. 2006, 151:293-308.
21. Grolle R. über Diplasiolejeunea in Asien. Fedd. Repert. 1966, 73:78-89.
22. Grolle R. The Hepaticae and Anthocerotae of the East African Islands. An annotated catalogue. Bryophyt. Biblioth. 1995, 48:1-178.
23. Grundmann M., Ansell S.W., Russel S.J., Koch M.A., Vogel J.C. Genetic structure of the widespread and common Mediterranean bryophyte Pleurochaete squarrosa (Brid.) Lindb. - evidence from nuclear and plastidic DNA sequence variation and allozymes. Molec. Ecol. 2007, 16:709-722.
24. Hall T.A. BIOEDIT: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids Symp. Ser. 1999, 41:95-98.
25. Hartmann F.A., Wilson R., Gradstein S.R., Schneider H., Heinrichs J. Testing hypotheses on species delimitations and disjunctions in the liverwort Bryopteris (Jungermanniopsida: Lejeuneaceae). Int. J. Plant Sci. 2006, 167:1205-1214.
26. Heinrichs J., Gradstein S.R., Wilson R., Schneider H. Towards a natural classification of liverworts (Marchantiophyta) based on the chloroplast gene rbcL. Cryptog. Bryol. 2005, 26:131-150.
27. Heinrichs J., Hentschel J., Bombosch A., Fiebig A., Reise J., Edelmann M., Kreier H.-P., Schäfer-Verwimp A., Caspari S., Schmidt A.R., Zhu R.-L., von Konrat M., Shaw B., Shaw A.J. One species or at least eight? Delimitation and distribution of Frullania tamarisci (L.) Dumort. (Jungermanniopsida, Porellales) inferred from nuclear and chloroplast DNA markers. Molec. Phylogen. Evol. 2010, 56:1105-1114.
28. Heinrichs J., Hentschel J., Feldberg K., Bombosch A., Schneider H. Phylogenetic biogeography and taxonomy of disjunctly distributed bryophytes. J. Syst. Evol. 2009, 47:497-508.
29. Heinrichs J., Klugmann F., Hentschel J., Schneider H. DNA taxonomy, cryptic speciation and diversification of the Neotropical-African liverwort, Marchesinia brachiata (Lejeuneaceae, Porellales). Molec. Phylogenet. Evol. 2009, 53:113-121.
30. Heinrichs J., Kreier H.-P., Feldberg K., Schmidt A.R., Zhu R.L., Shaw B., Shaw A.J., Wissemann V. Formalizing morphologically cryptic biological entities: New insights from DNA taxonomy, hybridization, and biogeography in the leafy liverwort Porella platyphylla (Jungermanniopsida, Porellales). Am. J. Bot. 2011, 98:1252-1262.
31. Heinrichs J., Lindner M., Gradstein S.R., Groth H., Buchbender V., Solga A., Fischer E. Origin and subdivision of Plagiochila (Jungermanniidae: Plagiochilaceae) in tropical Africa based on evidence from nuclear and chloroplast DNA sequences and morphology. Taxon 2005, 54:317-333.
32. Heinrichs J., Lindner M., Groth H., Hentschel J., Feldberg K., Renker C., Engel J.J., von Konrat M., Long D.G., Schneider H. Goodbye or welcome Gondwana? - insights into the phylogenetic biogeography of the leafy liverwort Plagiochila with a description of Proskauera, gen. nov. (Plagiochilaceae, Jungermanniales). Plant Syst. Evol. 2006, 258:211-226.
33. Hennequin S., Hovenkamp P., Christenhusz M.J.M., Schneider H. Phylogenetics and biogeography of Nephrolepis - a tale of old settlers and young tramps. Bot. J. Linn. Soc. 2010, 164:113-127.
34. Hentschel J., von Konrat M.J., Pócs T., Schäfer-Verwimp A., Shaw A.J., Schneider H., Heinrichs J. Molecular insights into the phylogeny and subgeneric classification of Frullania Raddi (Frullaniaceae, Porellales). Molec. Phylogen. Evol. 2009, 52:142-156.
35. Hillis D.M., Bull J.J. An empirical test of bootstrapping as a method for assessing the confidence in phylogenetic analysis. Syst. Biol. 1993, 42:182-192.
36. Holmgren P.K., Holmgren N.H., Barnett L.C. Index Herbariorum. Part I: The Herbaria of the World (Regnum Veg. 120) 1990, New York Botanical Garden, New York. eighth ed.
37. Huelsenbeck J.P., Ronquist F. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 2001, 17:754-755.
38. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985, 39:783-791.
39. Kreier H.-P., Feldberg K., Mahr F., Bombosch A., Schmidt A.R., Zhu R.-L., von Konrat M., Shaw B., Shaw A.J., Heinrichs J. Phylogeny of the leafy liverwort Ptilidium: cryptic speciation and shared haplotypes between the Northern and Southern Hemispheres. Molec. Phylogen. Evol. 2010, 57:1260-1267.
40. Kreier H.-P., Rex M., Weising K., Kessler M., Smith A.R., Schneider H. Inferring the diversification of the epiphytic fern genus Serpocaulon (Polypodiaceae) in South America using chloroplast sequences and amplified fragment length polymorphisms. Plant Syst. Evol. 2008, 274:1-16.
41. Laenen B., Désamoré A., Devos N., Shaw A.J., Gonzáles-Mancebo J.M., Carine M.A., Vanderpoorten A. Macaronesia: a source of hidden genetic diversity for post-glacial recolonization of western Europe in the leafy liverwort Radula lindenbergiana. J. Biogeogr. 2011, 38:631-639.
42. Larget B., Simon D.L. Markov chain Monte Carlo algorithms for the Bayesian analysis of phylogenetic trees. Molec. Biol. Evol. 1999, 16:750-759.
43. Löbel S., Rydin H. Trade-offs and habitat constraints in the establishment of epiphytic bryophytes. Funct. Ecol. 2010, 24:887-897.
44. Maddison, D.R., Maddison, W.P., 2004. Mesquite, version 2. Tucson, Arizona. http://www.mesquiteproject.org.
45. McLoughlin S. The breakup history of Gondwana and its impact on pre-Cenozoic floristic provincialism. Aust. Syst. Bot. 2001, 49:271-300.
46. Mason-Gamer R.J., Kellogg E.A. Testing for phylogenetic conflict among molecular data sets in the tribe Triticeae (Gramineae). Syst. Biol. 1996, 45:524-545.
47. Odrzykoski I.J., Chudzinska E., Szweykowski J. The hybrid origin of the polyploid liverwort Pellia borealis. Genetica 1996, 98:75-86.
48. Odrzykoski I.J., Szweykowski J. Genetic differentiation without concordant morphological divergence in the thallose liverwort Conocephalum conicum. Plant Syst. Evol. 1991, 178:135-152.
49. Pennington R.T., Lavin M., Sarkinen T., Lewis G.P., Klitgaard B.B., Hughes C.E. Contrasting plant diversification histories within the Andean biodiversity hotspot. Proc. Natl. Acad. Sci. USA 2010, 107:13783-13787.
50. Pócs T. Epiphyllous liverwort diversity at worldwide level and its threat and conservation. Anales Inst. Biol. Univ. Nac. Autón. México Ser. Bot. 1996, 67:109-127.
51. Pócs T. New or little-known epiphyllous bryophytes, X. On two Neotropical Diplasiolejeunea species. Bryologist 2006, 109:408-414.
52. Pócs T., Schäfer-Verwimp A. East African bryophytes, XXIII. Three new species of Diplasiolejeunea (Lejeuneaceae, Jungermanniopsida) from Madagascar. Cryptog. Bryol. 2006, 27:439-452.
53. Pohjamo M., Laaka-Lindberg S., Ovaskainen O., Korpelainen H. Dispersal potential of spores and asexual propagules in the epixylic hepatic Anastrophyllum hellerianum. Evol. Ecol. 2006, 20:415-430.
54. Posada D. JModelTest: phylogenetic model averaging. Molec. Biol. Evol. 2008, 25:1253-1256.
55. Rambaut A., Drummond A.J., 2003. Tracer v1.3. http://www.evolve.zoo.ox.ac.uk.
56. Ramaiya M., Johnston M.G., Shaw B., Heinrichs J., Hentschel J., von Konrat M., Davison P.G., Shaw A.J. Morphologically cryptic biological species within the liverwort Frullania asagrayana. Am. J. Bot. 2010, 97:1707-1718.
57. Renner M.A.M., Brown E.A., Wardle G.M. The Lejeunea tumida group is positively paraphyletic (Lejeuneaceae: Jungermanniopsida). Aust. Syst. Bot. 2011, 24:10-18.
58. Renner S. Plant dispersal across the tropical Atlantic by wind and sea currents. Int. J. Plant Sci. 2004, 165(suppl.):S23-S33.
59. Reyes D.M. El género Diplasiolejeunea en Cuba. Acta Bot. Acad. Sci. Hung. 1982, 28:145-180.
60. Schäfer-Verwimp A. The genus Diplasiolejeunea (Lejeuneaceae, Marchantiopsida) in the tropical Andes, with description of two new species. Cryptog. Bryol. 2004, 25:3-17.
61. Schäfer-Verwimp A. Diplasiolejeunea riclefgrollei (Lejeuneaceae, Jungermanniopsida), a remarkable new species from Cuba. Cryptog. Bryol. 2005, 26:37-40.
62. Schäfer-Verwimp A. A new species of Diplasiolejeunea (Lejeuneaceae, Jungermanniopsida) from Sumatra, and a key for the genus in Asia. Herzogia 2006, 19:239-244.
63. Schäfer-Verwimp A., Reiner-Drehwald M.E. Some additions to the bryophyte flora of Guadeloupe, West Indies, and new synonyms in the genera Diplasiolejeunea and Lejeunea. Cryptog. Bryol. 2009, 30:357-375.
64. Schuster R.M. Studies on Hepaticae, XLIX-LIII. New Lejeuneaceae from Dominica and Jamaica. Bull. Torrey Bot. Club 1970, 97:336-352.
65. Schuster R.M. The Hepaticae and Anthocerotae of North America, East of the Hundredth Meridian 1980, vol. IV. Columbia University Press, New York.
66. Shaw A.J. Biogeographic patterns and cryptic speciation in bryophytes. J. Biogeogr. 2001, 28:253-261.
67. Shaw A.J., Boles S., Shaw B. A phylogenetic delimitation of the "Sphagnum subsecundum complex" (Sphagnaceae, Bryophyta). Am. J. Bot. 2008, 95:731-744.
68. Sonnleitner M., Dullinger S., Wanek W., Zechmeister H. Microclimatic patterns correlate with the distribution of epiphyllous bryophytes in a tropical lowland rain forest in Costa Rica. J. Trop. Ecol. 2009, 25:321-330.
69. Stech M., Wagner D. Molecular relationships, biogeography, and evolution of Gondwanan Campylopus species (Dicranaceae, Bryopsida). Taxon 2005, 54:377-382.
70. Sukkharak P., Gradstein S.R., Stech M. Phylogeny, taxon circumscriptions and character evolution in the core Ptychanthoideae (Lejeuneaceae, Marchantiophyta). Taxon 2011, 60:1607-1622.
71. Swofford, D.L., 2000. PAUP, phylogenetic analyses using parsimony (and other methods), version 4.01b10. Sinauer Associates, Sunderland, Massachusetts.
72. Tavaré S. Some probabalistic and statistical problems on the analysis of DNA sequences. Lec. Math. Life Sci. 1986, 17:57-86.
73. Tixier P. Contribution à la connaicance des Cololejeunoideae. Bryophyt. Biblioth. 1985, 27:1-439.
74. Vanderpoorten A., Gradstein S.R., Carine M.A., Devos N. The ghosts of Gondwana and Laurasia in modern liverwort distributions. Biol. Rev. 2010, 85:471-487.
75. Vanderpoorten A., Schäfer-Verwimp A., Heinrichs J., Devos N., Long D.G. The taxonomy of the leafy liverwort genus Leptoscyphus (Lophocoleaceae) revisited. Taxon 2010, 59:176-186.
76. Wachowiak W., Ba{ogonek}cziewicz A., Chudzińska E., Buczkowska K. Cryptic speciation in liverworts - a case study in the Aneura pinguis complex. Bot. J. Linn. Soc. 2007, 155:273-282.
77. Will K.W., Mishler B.D., Wheeler Q.D. The perils of DNA barcoding and the need for integrative taxonomy. Syst. Biol. 2005, 54:844-851.
78. Wilson R., Gradstein S.R., Schneider H., Heinrichs J. Unravelling the phylogeny of Lejeuneaceae (Jungermanniopsida): evidence for four main lineages. Molec. Phylogen. Evol. 2007, 43:270-282.
79. Wilson R., Heinrichs J., Hentschel J., Gradstein S.R., Schneider H. Steady diversification of derived liverworts under Tertiary climatic fluctuations. Biol. Lett. 2007, 3:566-569.
80. Wolf P.G., Schneider H., Ranker T.A. Geographic distributions of homosporous ferns: does dispersal obscure evidence of vicariance?. J. Biogeogr. 2001, 28:263-270.
81. Yu J., Devos N., Mayestyk P., Shaw A.J. Intercontinentally disjunct species are derived rather than relictual in the moss genus Daltonia (Bryophyta). Taxon 2010, 59:459-465.
82. Zachos J., Pagani M., Sloan L., Thomas L., Billups K. Trends, rhythms and aberrations in global climate 65 Ma to present. Science 2001, 292:686-693.
83. van Zanten B.O. Experimental studies on trans-oceanic long-range dispersal of moss spores in the Southern Hemisphere. J. Hattori Bot. Lab. 1978, 44:455-482.
84. van Zanten B.O., Gradstein S.R. Experimental dispersal geography of Neotropical liverworts. Beih. Nova Hedwigia 1988, 90:41-94.
85. van Zanten B.O., Pócs T. Distribution and dispersal of bryophytes. Advances in Bryology 1981, 479-562. Cramer, Vaduz. W. Schultze-Motel (Ed.).
86. Zartman C.E. Habitat fragmentation impacts on epiphyllous bryophyte communities in central Amazonia. Ecology 2003, 84:948-954.
87. Zhu R.-L., So M.-L. Epiphyllous liverworts of China. Nova Hedwigia Beih. 2001, 121:1-418.
88. Zwickl, D.J. 2006. Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. GARLI version 0.96 beta. http://www.nescent.org/informatics/.