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Volumn 10, Issue 8, 2012, Pages 1765-1783

The transcriptome of Bathymodiolus azoricus gill reveals expression of genes from endosymbionts and free-living deep-sea bacteria

Author keywords

Bathymodiolus azoricus; Deep sea; Lucky strike; Methanotrophic endosymbiont; Mid Atlantic Ridge; Mussel; Sulfurovum; Thiotrophic endosymbiont

Indexed keywords

METHANE; RNA 16S; SULFUR; TRANSCRIPTOME;

EID: 84865967880     PISSN: None     EISSN: 16603397     Source Type: Journal    
DOI: 10.3390/md10081765     Document Type: Article
Times cited : (19)

References (66)
  • 1
    • 80055000227 scopus 로고    scopus 로고
    • Conjugating effects of symbionts and environmental factors on gene expression in deep-sea hydrothermal vent mussels
    • doi:10.1186/1471-2164-12-530
    • Boutet, I.; Ripp, R.; Lecompte, O.; Dossat, C.; Corre, E.; Tanguy, A.; Lallier, F.H. Conjugating effects of symbionts and environmental factors on gene expression in deep-sea hydrothermal vent mussels. BMC Genomics 2011, 12, doi:10.1186/1471-2164-12-530.
    • (2011) BMC Genomics , vol.12
    • Boutet, I.1    Ripp, R.2    Lecompte, O.3    Dossat, C.4    Corre, E.5    Tanguy, A.6    Lallier, F.H.7
  • 2
    • 33749385463 scopus 로고    scopus 로고
    • Off-axis symbiosis found: Characterization and biogeography of bacterial symbionts of Bathymodiolus mussels from Lost City hydrothermal vents
    • DOI 10.1111/j.1462-2920.2005.01113.x
    • De Chaine, E.G.; Bates, A.E.; Shank, T.M.; Cavanaugh, C.M. Off-axis symbiosis found: Characterization and biogeography of bacterial symbionts of Bathymodiolus mussels from Lost City hydrothermal vents. Environ. Microbiol. 2006, 8, 1902-1912. (Pubitemid 44506887)
    • (2006) Environmental Microbiology , vol.8 , Issue.11 , pp. 1902-1912
    • DeChaine, E.G.1    Bates, A.E.2    Shank, T.M.3    Cavanaugh, C.M.4
  • 6
    • 0036962764 scopus 로고    scopus 로고
    • Ultrastructural, biochemical, and immunological characterization of two populations of the mytilid mussel Bathymodiolus azoricus from the Mid-Atlantic Ridge: Evidence for a dual symbiosis
    • DOI 10.1007/s00227-002-0903-9
    • Fiala-Médioni, A.; McKiness, Z.; Dando, P.; Boulegue, J.; Mariotti, A.; Alayse-Danet, A.; Robinson, J.; Cavanaugh, C. Ultrastructural, biochemical, and immunological characterization of two populations of the mytilid mussel Bathymodiolus azoricus from the Mid-Atlantic Ridge: Evidence for a dual symbiosis. Mar. Biol. 2002, 141, 1035-1043. (Pubitemid 36128303)
    • (2002) Marine Biology , vol.141 , Issue.6 , pp. 1035-1043
    • Fiala-Medioni, A.1    McKiness, Z.P.2    Dando, P.3    Boulegue, J.4    Mariotti, A.5    Alayse-Danet, A.M.6    Robinson, J.J.7    Cavanaugh, C.M.8
  • 7
    • 0242573192 scopus 로고    scopus 로고
    • Environmental Acquisition of Thiotrophic Endosymbionts by Deep-Sea Mussels of the Genus Bathymodiolus
    • DOI 10.1128/AEM.69.11.6785-6792.2003
    • Won, Y.-J.; Hallam, S.J.; O'Mullan, G.D.; Pan, I.L.; Buck, K.R.; Vrijenhoek, R.C. Environmental acquisition of thiotrophic endosymbionts by deep-sea mussels of the genus Bathymodiolus. Appl. Environ. Microbiol. 2003, 69, 6785-6792. (Pubitemid 37420218)
    • (2003) Applied and Environmental Microbiology , vol.69 , Issue.11 , pp. 6785-6792
    • Won, Y.-J.1    Hallam, S.J.2    O'Mullan, G.D.3    Pan, I.L.4    Buck, K.R.5    Vrijenhoek, R.C.6
  • 8
    • 61849135409 scopus 로고    scopus 로고
    • Symbioses between deep-sea mussels (Mytilidae: Bathymodiolinae) and chemosynthetic bacteria: Diversity, function and evolution
    • Duperron, S.; Lorion, J.; Samadi, S.; Gros, O.; Gaill, F. Symbioses between deep-sea mussels (Mytilidae: Bathymodiolinae) and chemosynthetic bacteria: Diversity, function and evolution. C. R. Biol. 2009, 332, 298-310.
    • (2009) C. R. Biol. , vol.332 , pp. 298-310
    • Duperron, S.1    Lorion, J.2    Samadi, S.3    Gros, O.4    Gaill, F.5
  • 9
    • 0026272769 scopus 로고
    • Experimental evidence for filter-feeding by the hydrothermal vent mussel, Bathymodiolus thermophilus
    • Page, H.M.; Fiala-Medioni, A.; Fisher, C.R.; Childress, J.J. Experimental evidence for filter-feeding by the hydrothermal vent mussel, Bathymodiolus thermophilus. Deep Sea Res. A Oceanogr. Res. Pap. 1991, 38, 1455-1461.
    • (1991) Deep Sea Res. A Oceanogr. Res. Pap. , vol.38 , pp. 1455-1461
    • Page, H.M.1    Fiala-Medioni, A.2    Fisher, C.R.3    Childress, J.J.4
  • 10
    • 0028856116 scopus 로고
    • Intracellular coexistence of methano- And thioautotrophic bacteria in a hydrothermal vent mussel
    • Distel, D.L.; Lee, H.K.; Cavanaugh, C.M. Intracellular coexistence of methano- and thioautotrophic bacteria in a hydrothermal vent mussel. Proc. Natl. Acad. Sci. USA 1995, 92, 9598-9602.
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 9598-9602
    • Distel, D.L.1    Lee, H.K.2    Cavanaugh, C.M.3
  • 12
    • 68549085316 scopus 로고    scopus 로고
    • Comparative metagenomic analysis of a microbial community residing at a depth of 4,000 meters at station ALOHA in the North Pacific subtropical gyre
    • Konstantinidis, K.T.; Braff, J.; Karl, D.M.; DeLong, E.F. Comparative metagenomic analysis of a microbial community residing at a depth of 4,000 meters at station ALOHA in the North Pacific subtropical gyre. Appl. Environ. Microbiol. 2009, 75, 5345-5355.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 5345-5355
    • Konstantinidis, K.T.1    Braff, J.2    Karl, D.M.3    DeLong, E.F.4
  • 14
    • 79951810312 scopus 로고    scopus 로고
    • Quantitative analysis of a deeply sequenced marine microbial metatranscriptome
    • Gifford, S.M.; Sharma, S.; Rinta-Kanto, J.M.; Moran, M.A. Quantitative analysis of a deeply sequenced marine microbial metatranscriptome. ISME J. 2011, 5, 461-472.
    • (2011) ISME J. , vol.5 , pp. 461-472
    • Gifford, S.M.1    Sharma, S.2    Rinta-Kanto, J.M.3    Moran, M.A.4
  • 15
    • 70350650481 scopus 로고    scopus 로고
    • Expression of genes for sulfur oxidation in the intracellular chemoautotrophic symbiont of the deep-sea bivalve Calyptogena okutanii
    • Harada, M.; Yoshida, T.; Kuwahara, H.; Shimamura, S.; Takaki, Y.; Kato, C.; Miwa, T.; Miyake, H.; Maruyama, T. Expression of genes for sulfur oxidation in the intracellular chemoautotrophic symbiont of the deep-sea bivalve Calyptogena okutanii. Extremophiles 2009, 13, 895-903.
    • (2009) Extremophiles , vol.13 , pp. 895-903
    • Harada, M.1    Yoshida, T.2    Kuwahara, H.3    Shimamura, S.4    Takaki, Y.5    Kato, C.6    Miwa, T.7    Miyake, H.8    Maruyama, T.9
  • 16
    • 84858444651 scopus 로고    scopus 로고
    • Metatranscriptomic analysis of sulfur oxidation genes in the endosymbiont of solemya velum
    • doi:10.3389/fmicb.2011.00134
    • Stewart, F.J.; Dmytrenko, O.; DeLong, E.F.; Cavanaugh, C.M. Metatranscriptomic analysis of sulfur oxidation genes in the endosymbiont of solemya velum. Front Microbiol. 2011, 2, doi:10.3389/fmicb.2011.00134.
    • (2011) Front Microbiol. , vol.2
    • Stewart, F.J.1    Dmytrenko, O.2    DeLong, E.F.3    Cavanaugh, C.M.4
  • 17
    • 77957675520 scopus 로고    scopus 로고
    • High-throughput sequencing and analysis of the gill tissue transcriptome from the deep-sea hydrothermal vent mussel Bathymodiolus azoricus
    • doi:10.1186/ 1471-2164-11-559
    • Bettencourt, R.; Pinheiro, M.; Egas, C.; Gomes, P.; Afonso, M.; Shank, T.; Santos, R.S. High-throughput sequencing and analysis of the gill tissue transcriptome from the deep-sea hydrothermal vent mussel Bathymodiolus azoricus. BMC Genomics 2010, 11, doi:10.1186/ 1471-2164-11-559.
    • (2010) BMC Genomics , vol.11
    • Bettencourt, R.1    Pinheiro, M.2    Egas, C.3    Gomes, P.4    Afonso, M.5    Shank, T.6    Santos, R.S.7
  • 18
    • 53549118607 scopus 로고    scopus 로고
    • The metagenomics RAST server - A public resource for the automatic phylogenetic and functional analysis of metagenomes
    • doi:10.1186/1471-2105-9-386
    • Meyer, F.; Paarmann, D.; D'Souza, M.; Olson, R.; Glass, E.; Kubal, M.; Paczian, T.; Rodriguez, A.; Stevens, R.; Wilke, A.; et al. The metagenomics RAST server - A public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinforma. 2008, 9, doi:10.1186/1471-2105-9-386.
    • (2008) BMC Bioinforma. , vol.9
    • Meyer, F.1    Paarmann, D.2    D'Souza, M.3    Olson, R.4    Glass, E.5    Kubal, M.6    Paczian, T.7    Rodriguez, A.8    Stevens, R.9    Wilke, A.10
  • 19
    • 66649089244 scopus 로고    scopus 로고
    • Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre
    • Poretsky, R.S.; Hewson, I.; Sun, S.; Allen, A.E.; Zehr, J.P.; Moran, M.A. Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre. Environ. Microbiol. 2009, 11, 1358-1375.
    • (2009) Environ. Microbiol. , vol.11 , pp. 1358-1375
    • Poretsky, R.S.1    Hewson, I.2    Sun, S.3    Allen, A.E.4    Zehr, J.P.5    Moran, M.A.6
  • 20
    • 70350284310 scopus 로고    scopus 로고
    • Microbial community gene expression within colonies of the diazotroph, Trichodesmium, from the Southwest Pacific Ocean
    • Hewson, I.; Poretsky, R.S.; Dyhrman, S.T.; Zielinski, B.; White, A.E.; Tripp, H.J.; Montoya, J.P.; Zehr, J.P. Microbial community gene expression within colonies of the diazotroph, Trichodesmium, from the Southwest Pacific Ocean. ISME J. 2009, 3, 1286-1300.
    • (2009) ISME J. , vol.3 , pp. 1286-1300
    • Hewson, I.1    Poretsky, R.S.2    Dyhrman, S.T.3    Zielinski, B.4    White, A.E.5    Tripp, H.J.6    Montoya, J.P.7    Zehr, J.P.8
  • 21
    • 67649618951 scopus 로고    scopus 로고
    • Conjugative Type 4 secretion system of a novel large plasmid from the chemoautotroph Tetrathiobacter kashmirensis and construction of shuttle vectors for Alcaligenaceae
    • Dam, B.; Ghosh, W.; Das Gupta, S.K. Conjugative Type 4 secretion system of a novel large plasmid from the chemoautotroph Tetrathiobacter kashmirensis and construction of shuttle vectors for Alcaligenaceae. Appl. Environ. Microbiol. 2009, 75, 4362-4373.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 4362-4373
    • Dam, B.1    Ghosh, W.2    Das Gupta, S.K.3
  • 22
    • 0037392945 scopus 로고    scopus 로고
    • Coupling of bacterial endosymbiont and host mitochondrial genomes in the hydrothermal vent clam Calyptogena magnifica
    • DOI 10.1128/AEM.69.4.2058-2064.2003
    • Hurtado, L.A.; Mateos, M.; Lutz, R.A.; Vrijenhoek, R.C. Coupling of bacterial endosymbiont and host mitochondrial genomes in the hydrothermal vent clam Calyptogena magnifica. Appl. Environ. Microbiol. 2003, 69, 2058-2064. (Pubitemid 36443620)
    • (2003) Applied and Environmental Microbiology , vol.69 , Issue.4 , pp. 2058-2064
    • Hurtado, L.A.1    Mateos, M.2    Lutz, R.A.3    Vrijenhoek, R.C.4
  • 24
    • 79151472877 scopus 로고    scopus 로고
    • Correlations between bacterial ecology and mobile DNA
    • Newton, I.; Bordenstein, S. Correlations between bacterial ecology and mobile DNA. Curr. Microbiol. 2011, 62, 198-208.
    • (2011) Curr. Microbiol. , vol.62 , pp. 198-208
    • Newton, I.1    Bordenstein, S.2
  • 26
    • 52949095063 scopus 로고    scopus 로고
    • Sulfur Metabolism in Phototrophic Sulfur Bacteria
    • Poole, R.K., Ed.; Academic Press: New York, NY, USA
    • Frigaard, N.-U.; Dahl, C. Sulfur Metabolism in Phototrophic Sulfur Bacteria. In Advances in Microbial Physiology; Poole, R.K., Ed.; Academic Press: New York, NY, USA, 2008; Volume 54, pp. 103-200.
    • (2008) Advances in Microbial Physiology , vol.54 , pp. 103-200
    • Frigaard, N.-U.1    Dahl, C.2
  • 27
    • 66249089033 scopus 로고    scopus 로고
    • Evidence for homologous recombination in intracellular chemosynthetic clam symbionts
    • Stewart, F.J.; Young, C.R.; Cavanaugh, C.M. Evidence for homologous recombination in intracellular chemosynthetic clam symbionts. Mol. Biol. Evol. 2009, 26, 1391-1404.
    • (2009) Mol. Biol. Evol. , vol.26 , pp. 1391-1404
    • Stewart, F.J.1    Young, C.R.2    Cavanaugh, C.M.3
  • 29
    • 0035845589 scopus 로고    scopus 로고
    • Enzymology and molecular biology of prokaryotic sulfite oxidation
    • DOI 10.1016/S0378-1097(01)00304-4, PII S0378109701003044
    • Kappler, U.; Dahl, C. Enzymology and molecular biology of prokaryotic sulfite oxidation. FEMS Microbiol. Lett. 2001, 203, 1-9. (Pubitemid 32830986)
    • (2001) FEMS Microbiology Letters , vol.203 , Issue.1 , pp. 1-9
    • Kappler, U.1    Dahl, C.2
  • 31
    • 34248589273 scopus 로고    scopus 로고
    • Diversity, relative abundance and metabolic potential of bacterial endosymbionts in three Bathymodiolus mussel species from cold seeps in the Gulf of Mexico
    • DOI 10.1111/j.1462-2920.2007.01259.x
    • Duperron, S.; Sibuet, M.; MacGregor, B.J.; Kuypers, M.M.M.; Fisher, C.R.; Dubilier, N. Diversity, relative abundance and metabolic potential of bacterial endosymbionts in three Bathymodiolus mussel species from cold seeps in the Gulf of Mexico. Environ. Microbiol. 2007, 9, 1423-1438. (Pubitemid 46763522)
    • (2007) Environmental Microbiology , vol.9 , Issue.6 , pp. 1423-1438
    • Duperron, S.1    Sibuet, M.2    MacGregor, B.J.3    Kuypers, M.M.M.4    Fisher, C.R.5    Dubilier, N.6
  • 32
    • 77955935025 scopus 로고    scopus 로고
    • Genes and pathways for CO2 fixation in the obligate, chemolithoautotrophic acidophile, Acidithiobacillus ferrooxidans, Carbon fixation in A. ferrooxidans
    • doi:10.1186/1471-2180-10-229
    • Esparza, M.; Cárdenas, J.; Bowien, B.; Jedlicki, E.; Holmes, D.S. Genes and pathways for CO2 fixation in the obligate, chemolithoautotrophic acidophile, Acidithiobacillus ferrooxidans, Carbon fixation in A. ferrooxidans. BMC Microbiol. 2010, 10, doi:10.1186/1471-2180-10-229.
    • (2010) BMC Microbiol. , vol.10
    • Esparza, M.1    Cárdenas, J.2    Bowien, B.3    Jedlicki, E.4    Holmes, D.S.5
  • 34
    • 79951810387 scopus 로고    scopus 로고
    • Comparative metagenomics of microbial communities inhabiting deep-sea hydrothermal vent chimneys with contrasting chemistries
    • Xie, W.; Wang, F.; Guo, L.; Chen, Z.; Sievert, S.M.; Meng, J.; Huang, G.; Li, Y.; Yan, Q.; Wu, S.; et al. Comparative metagenomics of microbial communities inhabiting deep-sea hydrothermal vent chimneys with contrasting chemistries. ISME J. 2011, 5, 414-426.
    • (2011) ISME J. , vol.5 , pp. 414-426
    • Xie, W.1    Wang, F.2    Guo, L.3    Chen, Z.4    Sievert, S.M.5    Meng, J.6    Huang, G.7    Li, Y.8    Yan, Q.9    Wu, S.10
  • 36
    • 84865964735 scopus 로고    scopus 로고
    • Department of Oceanography and Fisheries, University of Azores, Horta, Portugal. Unpublished work
    • Bettencourt, R. Department of Oceanography and Fisheries, University of Azores, Horta, Portugal. Unpublished work, 2012.
    • (2012)
    • Bettencourt, R.1
  • 37
    • 48749117805 scopus 로고    scopus 로고
    • Metagenomic signatures of the peru margin subseafloor biosphere show a genetically distinct environment
    • Biddle, J.F.; Fitz-Gibbon, S.; Schuster, S.C.; Brenchley, J.E.; House, C.H. Metagenomic signatures of the peru margin subseafloor biosphere show a genetically distinct environment. Proc. Natl. Acad. Sci. USA 2008, 105, 10583-10588.
    • (2008) Proc. Natl. Acad. Sci. USA , vol.105 , pp. 10583-10588
    • Biddle, J.F.1    Fitz-Gibbon, S.2    Schuster, S.C.3    Brenchley, J.E.4    House, C.H.5
  • 38
    • 78049286743 scopus 로고    scopus 로고
    • Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea
    • McCarren, J.; Becker, J.W.; Repeta, D.J.; Shi, Y.; Young, C.R.; Malmstrom, R.R.; Chisholm, S.W.; DeLong, E.F. Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea. Proc. Natl. Acad. Sci. USA 2010, 107, 16420-16427.
    • (2010) Proc. Natl. Acad. Sci. USA , vol.107 , pp. 16420-16427
    • McCarren, J.1    Becker, J.W.2    Repeta, D.J.3    Shi, Y.4    Young, C.R.5    Malmstrom, R.R.6    Chisholm, S.W.7    DeLong, E.F.8
  • 41
    • 68249161022 scopus 로고    scopus 로고
    • Microbial communities in iron-silica-rich microbial mats at deep-sea hydrothermal fields of the Southern Mariana Trough
    • Kato, S.; Kobayashi, C.; Kakegawa, T.; Yamagishi, A. Microbial communities in iron-silica-rich microbial mats at deep-sea hydrothermal fields of the Southern Mariana Trough. Environ. Microbiol. 2009, 11, 2094-2111.
    • (2009) Environ. Microbiol. , vol.11 , pp. 2094-2111
    • Kato, S.1    Kobayashi, C.2    Kakegawa, T.3    Yamagishi, A.4
  • 42
    • 84857869999 scopus 로고    scopus 로고
    • Life and death of deep-sea vents: Bacterial diversity and ecosystem succession on inactive hydrothermal sulfides
    • doi: 10.1128/ mBio.00279-11
    • Sylvan, J.B.; Toner, B.M.; Edwards, K.J. Life and death of deep-sea vents: Bacterial diversity and ecosystem succession on inactive hydrothermal sulfides. mBio 2012, 3, doi: 10.1128/ mBio.00279-11.
    • (2012) mBio , vol.3
    • Sylvan, J.B.1    Toner, B.M.2    Edwards, K.J.3
  • 43
    • 34247488726 scopus 로고    scopus 로고
    • The SAR92 clade: An abundant coastal clade of culturable marine bacteria possessing proteorhodopsin
    • DOI 10.1128/AEM.02559-06
    • Stingl, U.; Desiderio, R.A.; Cho, J.-C.; Vergin, K.L.; Giovannoni, S.J. The SAR92 clade: An abundant coastal clade of culturable marine bacteria possessing proteorhodopsin. Appl. Environ. Microbiol. 2007, 73, 2290-2296. (Pubitemid 46649521)
    • (2007) Applied and Environmental Microbiology , vol.73 , Issue.7 , pp. 2290-2296
    • Stingl, U.1    Desiderio, R.A.2    Cho, J.-C.3    Vergin, K.L.4    Giovannoni, S.J.5
  • 45
    • 79960004119 scopus 로고    scopus 로고
    • Interactive tree of life v2: Online annotation and display of phylogenetic trees made easy
    • Letunic, I.; Bork, P. Interactive tree of life v2: Online annotation and display of phylogenetic trees made easy. Nucleic Acids Res. 2011, 39, W475-W478.
    • (2011) Nucleic Acids Res. , vol.39
    • Letunic, I.1    Bork, P.2
  • 48
    • 39749160523 scopus 로고    scopus 로고
    • Colonization of Sulfurovum sp. on the gill surfaces of Alvinocaris longirostris, a deep-sea hydrothermal vent shrimp
    • DOI 10.1111/j.1439-0485.2007.00211.x
    • Tokuda, G.; Yamada, A.; Nakano, K.; Arita, N.O.; Yamasaki, H. Colonization of Sulfurovum sp. on the gill surfaces of Alvinocaris longirostris, a deep-sea hydrothermal vent shrimp. Mar. Ecol. 2007, 29, 106-114. (Pubitemid 351308870)
    • (2008) Marine Ecology , vol.29 , Issue.1 , pp. 106-114
    • Tokuda, G.1    Yamada, A.2    Nakano, K.3    Arita, N.O.4    Yamasaki, H.5
  • 49
    • 79551703171 scopus 로고    scopus 로고
    • Spirochetes in crystalline styles of marine bivalves: Group-specific PCR detection and 16S rRNA sequence analysis
    • Husmann, G.; Gerdts, G.; Wichels, A. Spirochetes in crystalline styles of marine bivalves: Group-specific PCR detection and 16S rRNA sequence analysis. J. Shellfish Res. 2010, 29, 1069-1075.
    • (2010) J. Shellfish Res. , vol.29 , pp. 1069-1075
    • Husmann, G.1    Gerdts, G.2    Wichels, A.3
  • 50
    • 32044458392 scopus 로고    scopus 로고
    • Enzymatic and genetic characterization of carbon and energy metabolisms by deep-sea hydrothermal chemolithoautotrophic isolates of epsilonproteobacteria
    • Takai, K.; Campbell, B.J.; Cary, S.C.; Suzuki, M.; Oida, H.; Nunoura, T.; Hirayama, H.; Nakagawa, S.; Suzuki, Y.; Inagaki, F.; et al. Enzymatic and genetic characterization of carbon and energy metabolisms by deep-sea hydrothermal chemolithoautotrophic isolates of epsilonproteobacteria. Appl. Environ. Microbiol. 2005, 71, 7310-7320.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 7310-7320
    • Takai, K.1    Campbell, B.J.2    Cary, S.C.3    Suzuki, M.4    Oida, H.5    Nunoura, T.6    Hirayama, H.7    Nakagawa, S.8    Suzuki, Y.9    Inagaki, F.10
  • 51
    • 0035909781 scopus 로고    scopus 로고
    • ε-Proteobacterial diversity from a deep-sea hydrothermal vent on the Mid-Atlantic Ridge
    • DOI 10.1016/S0378-1097(01)00503-1, PII S0378109701005031
    • Corre, E.; Reysenbach, A.L.; Prieur, D. Epsilon-proteobacterial diversity from a deep-sea hydrothermal vent on the Mid-Atlantic Ridge. FEMS Microbiol. Lett. 2001, 205, 329-335. (Pubitemid 34031940)
    • (2001) FEMS Microbiology Letters , vol.205 , Issue.2 , pp. 329-335
    • Corre, E.1    Reysenbach, A.-L.2    Prieur, D.3
  • 53
    • 77955241081 scopus 로고    scopus 로고
    • Functional genes as markers for sulfur cycling and CO2 fixation in microbial communities of hydrothermal vents of the Logatchev field
    • Hügler, M.; Gärtner, A.; Imhoff, J.F. Functional genes as markers for sulfur cycling and CO2 fixation in microbial communities of hydrothermal vents of the Logatchev field. FEMS Microbiol. Ecol. 2010, 73, 526-537.
    • (2010) FEMS Microbiol. Ecol. , vol.73 , pp. 526-537
    • Hügler, M.1    Gärtner, A.2    Imhoff, J.F.3
  • 54
    • 77955249226 scopus 로고    scopus 로고
    • Dual symbiosis of the vent shrimp Rimicaris exoculata with filamentous gamma- and epsilonproteobacteria at four Mid-Atlantic Ridge hydrothermal vent fields
    • Petersen, J.M.; Ramette, A.; Lott, C.; Cambon-Bonavita, M.-A.; Zbinden, M.; Dubilier, N. Dual symbiosis of the vent shrimp Rimicaris exoculata with filamentous gamma- and epsilonproteobacteria at four Mid-Atlantic Ridge hydrothermal vent fields. Environ. Microbiol. 2010, 12, 2204-2218.
    • (2010) Environ. Microbiol. , vol.12 , pp. 2204-2218
    • Petersen, J.M.1    Ramette, A.2    Lott, C.3    Cambon-Bonavita, M.-A.4    Zbinden, M.5    Dubilier, N.6
  • 55
    • 3042615882 scopus 로고    scopus 로고
    • Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs
    • DOI 10.1101/gr.1917404
    • Chevreux, B.; Pfisterer, T.; Drescher, B.; Driesel, A.J.; Müller, W.E.G.; Wetter, T.; Suhai, S. Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs. Genome Res. 2004, 14, 1147-1159. (Pubitemid 38811551)
    • (2004) Genome Research , vol.14 , Issue.6 , pp. 1147-1159
    • Chevreux, B.1    Pfisterer, T.2    Drescher, B.3    Driesel, A.J.4    Muller, W.E.G.5    Wetter, T.6    Suhai, S.7
  • 56
    • 84874756429 scopus 로고    scopus 로고
    • Available online: accessed on 19 June 2010
    • DeepSeaVent Database. Available online: http://transcriptomics.biocant. pt:8080/deepSeaVent (accessed on 19 June 2010).
    • DeepSeaVent Database
  • 58
    • 84874757601 scopus 로고    scopus 로고
    • Available online: accessed on 5 February 2012
    • MG-RAST Metagenomics Analysis Server. Available online: http://metagenomics.anl.gov (accessed on 5 February 2012).
    • MG-RAST Metagenomics Analysis Server
  • 59
    • 70350527180 scopus 로고    scopus 로고
    • Conservative fragments in bacterial 16S rRNA genes and primer design for 16S ribosomal DNA amplicons in metagenomic studies
    • doi:10.1371/ journal.pone.0007401
    • Wang, Y.; Qian, P.-Y. Conservative fragments in bacterial 16S rRNA genes and primer design for 16S ribosomal DNA amplicons in metagenomic studies. PLoS One 2009, 4, doi:10.1371/ journal.pone.0007401.
    • (2009) PLoS One , vol.4
    • Wang, Y.1    Qian, P.-Y.2
  • 60
    • 77957244650 scopus 로고    scopus 로고
    • Search and clustering orders of magnitude faster than BLAST
    • Edgar, R.C. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 2010, 26, 2460-2461.
    • (2010) Bioinformatics , vol.26 , pp. 2460-2461
    • Edgar, R.C.1
  • 61
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • DOI 10.1101/gr.9.9.868
    • Huang, X.; Madan, A. CAP3: A DNA sequence assembly program. Genome Res. 1999, 9, 868-877. (Pubitemid 29488446)
    • (1999) Genome Research , vol.9 , Issue.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 63
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura, K.; Peterson, D.; Peterson, N.; Stecher, G.; Nei, M.; Kumar, S. MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 2011, 28, 2731-2739.
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 64
    • 0000732090 scopus 로고
    • Evolution of Protein Molecules
    • Munro, H.N., Ed.; Academic Press: New York, NY, USA
    • Jukes, T.; Cantor, C.R. Evolution of Protein Molecules. In Mammalian Protein Metabolism; Munro, H.N., Ed.; Academic Press: New York, NY, USA, 1969; Volume 3, pp. 121-132.
    • (1969) Mammalian Protein Metabolism , vol.3 , pp. 121-132
    • Jukes, T.1    Cantor, C.R.2
  • 65
    • 0000461280 scopus 로고
    • Confidence limits on Phylogenies: An approach using bootstrap
    • Felsenstein, J. Confidence limits on Phylogenies: An approach using bootstrap. Evolution 1985, 39, 783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 66
    • 84874756810 scopus 로고    scopus 로고
    • Homepage. Available online: accessed on 5 February 2010
    • Mid-Atlantic Ridge 2008 (MAR08) Homepage. Available online: http://www.deepseavoyage. research.pdx.edu (accessed on 5 February 2010).
    • Mid-Atlantic Ridge 2008 (MAR08)


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