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Volumn 11, Issue 8, 2009, Pages 2094-2111

Microbial communities in iron-silica-rich microbial mats at deep-sea hydrothermal fields of the Southern Mariana Trough

Author keywords

[No Author keywords available]

Indexed keywords

IRON; RNA 16S; SEA WATER; SILICON DIOXIDE;

EID: 68249161022     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/j.1462-2920.2009.01930.x     Document Type: Article
Times cited : (118)

References (118)
  • 1
    • 45149092121 scopus 로고    scopus 로고
    • Are archaea inherently less diverse than bacteria in the same environments?
    • Aller, J.Y. Kemp, P.F. (2008) Are archaea inherently less diverse than bacteria in the same environments? FEMS Microbiol Ecol 65 : 74 87.
    • (2008) FEMS Microbiol Ecol , vol.65 , pp. 74-87
    • Aller, J.Y.1    Kemp, P.F.2
  • 3
    • 33748799671 scopus 로고    scopus 로고
    • New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras
    • Ashelford, K.E., Chuzhanova, N.A., Fry, J.C., Jones, A.J. Weightman, A.J. (2006) New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras. Appl Environ Microbiol 72 : 5734 5741.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 5734-5741
    • Ashelford, K.E.1    Chuzhanova, N.A.2    Fry, J.C.3    Jones, A.J.4    Weightman, A.J.5
  • 4
    • 33646839211 scopus 로고    scopus 로고
    • Hydrothermal activity on near-arc sections of back-arc ridges: Results from the Mariana Trough and Lau basin
    • 09010.01029/02005GC000948.
    • Baker, E.T., Massoth, G.J., Nakamura, K., Embley, R.W., De Ronde, C.E.J. Arculus, R.J. (2005) Hydrothermal activity on near-arc sections of back-arc ridges: Results from the Mariana Trough and Lau basin. Geochem Geophys Geosyst 6 : Q09001. 09010.01029/02005GC000948.
    • (2005) Geochem Geophys Geosyst , vol.6 , pp. 09001
    • Baker, E.T.1    Massoth, G.J.2    Nakamura, K.3    Embley, R.W.4    De Ronde, C.E.J.5    Arculus, R.J.6
  • 5
    • 0029832927 scopus 로고    scopus 로고
    • Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences
    • Barns, S.M., Delwiche, C.F., Palmer, J.D. Pace, N.R. (1996) Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences. Proc Natl Acad Sci USA 93 : 9188 9193.
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 9188-9193
    • Barns, S.M.1    Delwiche, C.F.2    Palmer, J.D.3    Pace, N.R.4
  • 6
    • 21244464827 scopus 로고    scopus 로고
    • Molecular identification of picoplankton populationsin contrasting waters of the Arabian sea
    • Bernhard, M.F., Dagmar, W., Mikhail, V.Z., Peter, B. Rudolf, A. (2005) Molecular identification of picoplankton populationsin contrasting waters of the Arabian sea. Aquat Microb Ecol 39 : 145 157.
    • (2005) Aquat Microb Ecol , vol.39 , pp. 145-157
    • Bernhard, M.F.1    Dagmar, W.2    Mikhail, V.Z.3    Peter, B.4    Rudolf, A.5
  • 7
    • 18844481026 scopus 로고    scopus 로고
    • A marine microbial consortium apparently mediating anaerobic oxidation of methane
    • Boetius, A., Ravenschlag, K., Schubert, C.J., Rickert, D., Widdel, F., Gieseke, A., et al. (2000) A marine microbial consortium apparently mediating anaerobic oxidation of methane. Nature 407 : 623 626.
    • (2000) Nature , vol.407 , pp. 623-626
    • Boetius, A.1    Ravenschlag, K.2    Schubert, C.J.3    Rickert, D.4    Widdel, F.5    Gieseke, A.6
  • 8
    • 0038369933 scopus 로고    scopus 로고
    • Biodiversity, community structural shifts, and biogeography of prokaryotes within Antarctic continental shelf sediment
    • Bowman, J.P. Mccuaig, R.D. (2003) Biodiversity, community structural shifts, and biogeography of prokaryotes within Antarctic continental shelf sediment. Appl Environ Microbiol 69 : 2463 2483.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 2463-2483
    • Bowman, J.P.1    McCuaig, R.D.2
  • 9
    • 33748777657 scopus 로고    scopus 로고
    • Methane- and sulfur-metabolizing microbial communities dominate the Lost City hydrothermal field ecosystem
    • Brazelton, W.J., Schrenk, M.O., Kelley, D.S. Baross, J.A. (2006) Methane- and sulfur-metabolizing microbial communities dominate the Lost City hydrothermal field ecosystem. Appl Environ Microbiol 72 : 6257 6270.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 6257-6270
    • Brazelton, W.J.1    Schrenk, M.O.2    Kelley, D.S.3    Baross, J.A.4
  • 10
    • 0032874213 scopus 로고    scopus 로고
    • Distribution and diversity of sulfur-oxidizing Thiomicrospira spp. at a shallow-water hydrothermal vent in the Aegean sea (Milos, Greece)
    • Brinkhoff, T., Sievert, S.M., Kuever, J. Muyzer, G. (1999) Distribution and diversity of sulfur-oxidizing Thiomicrospira spp. at a shallow-water hydrothermal vent in the Aegean sea (Milos, Greece). Appl Environ Microbiol 65 : 3843 3849.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 3843-3849
    • Brinkhoff, T.1    Sievert, S.M.2    Kuever, J.3    Muyzer, G.4
  • 12
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • Castresana, J. (2000) Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17 : 540 552.
    • (2000) Mol Biol Evol , vol.17 , pp. 540-552
    • Castresana, J.1
  • 13
    • 0001463548 scopus 로고
    • Nonparametric estimation of the number of classes in a population
    • Chao, A. (1984) Nonparametric estimation of the number of classes in a population. Scand J Stat 11 : 265 270.
    • (1984) Scand J Stat , vol.11 , pp. 265-270
    • Chao, A.1
  • 14
    • 13444304367 scopus 로고    scopus 로고
    • The Ribosomal Database Project (RDP-II): Sequences and tools for high-throughput rRNA analysis
    • Cole, J.R., Chai, B., Farris, R.J., Wang, Q., Kulam, S.A., Mcgarrell, D.M., et al. (2005) The Ribosomal Database Project (RDP-II): Sequences and tools for high-throughput rRNA analysis. Nucleic Acids Res 33 : D294 D296.
    • (2005) Nucleic Acids Res , vol.33
    • Cole, J.R.1    Chai, B.2    Farris, R.J.3    Wang, Q.4    Kulam, S.A.5    McGarrell, D.M.6
  • 15
    • 0035909781 scopus 로고    scopus 로고
    • Proteobacterial diversity from a deep-sea hydrothermal vent on the Mid-Atlantic Ridge
    • Corre, E., Reysenbach, A.-L. Prieur, D. (2001) proteobacterial diversity from a deep-sea hydrothermal vent on the Mid-Atlantic Ridge. FEMS Microbiol Lett 205 : 329 335.
    • (2001) FEMS Microbiol Lett , vol.205 , pp. 329-335
    • Corre, E.1    Reysenbach, A.-L.2    Prieur, D.3
  • 16
    • 0032746991 scopus 로고    scopus 로고
    • Molecular characterization of functional and phylogenetic genes from natural populations of methanotrophs in lake sediments
    • Costello, A.M. Lidstrom, M.E. (1999) Molecular characterization of functional and phylogenetic genes from natural populations of methanotrophs in lake sediments. Appl Environ Microbiol 65 : 5066 5074.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 5066-5074
    • Costello, A.M.1    Lidstrom, M.E.2
  • 17
    • 35948938590 scopus 로고    scopus 로고
    • Respiratory succession and community succession of bacterioplankton in seasonally anoxic estuarine waters
    • Crump, B.C., Peranteau, C., Beckingham, B. Cornwell, J.C. (2007) Respiratory succession and community succession of bacterioplankton in seasonally anoxic estuarine waters. Appl Environ Microbiol 73 : 6802 6810.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 6802-6810
    • Crump, B.C.1    Peranteau, C.2    Beckingham, B.3    Cornwell, J.C.4
  • 18
    • 55949093535 scopus 로고    scopus 로고
    • Extreme spatial and temporal variability of hydrothermal microbial mat communities along the Mariana island arc and southern Mariana back-arc system
    • doi: 10.1029/2007JB005413.
    • Davis, R. Moyer, C. (2008) Extreme spatial and temporal variability of hydrothermal microbial mat communities along the Mariana island arc and southern Mariana back-arc system. J Geophys Res 113 : B08S15. doi: 10.1029/2007JB005413.
    • (2008) J Geophys Res , vol.113
    • Davis, R.1    Moyer, C.2
  • 19
    • 0026755238 scopus 로고
    • Archaea in coastal marine environments
    • Delong, E. (1992) Archaea in coastal marine environments. Proc Natl Acad Sci USA 89 : 5685 5689.
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 5685-5689
    • Delong, E.1
  • 20
    • 0013258174 scopus 로고    scopus 로고
    • Molecular characterization of sulfate-reducing bacteria in the Guaymas Basin
    • Dhillon, A., Teske, A., Dillon, J., Stahl, D.A. Sogin, M.L. (2003) Molecular characterization of sulfate-reducing bacteria in the Guaymas Basin. Appl Environ Microbiol 69 : 2765 2772.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 2765-2772
    • Dhillon, A.1    Teske, A.2    Dillon, J.3    Stahl, D.A.4    Sogin, M.L.5
  • 21
    • 0032189023 scopus 로고    scopus 로고
    • Microbial diversity in a hydrocarbon- and chlorinated-solvent- contaminated aquifer undergoing intrinsic bioremediation
    • Dojka, M.A., Hugenholtz, P., Haack, S.K. Pace, N.R. (1998) Microbial diversity in a hydrocarbon- and chlorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation. Appl Environ Microbiol 64 : 3869 3877.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 3869-3877
    • Dojka, M.A.1    Hugenholtz, P.2    Haack, S.K.3    Pace, N.R.4
  • 22
    • 84879881943 scopus 로고
    • Microbial involvement in the formation of Cambrian sea-floor silica-iron oxide deposits, Australia
    • Duhig, N.C., Davidson, G.J. Stolz, J. (1992) Microbial involvement in the formation of Cambrian sea-floor silica-iron oxide deposits, Australia. Geology 20 : 511 514.
    • (1992) Geology , vol.20 , pp. 511-514
    • Duhig, N.C.1    Davidson, G.J.2    Stolz, J.3
  • 23
    • 0035403962 scopus 로고    scopus 로고
    • Microbial diversity of the brine-seawater interface of the Kebrit deep, Red Sea, studied via 16S rRNA gene sequences and cultivation methods
    • Eder, W., Jahnke, L.L., Schmidt, M. Huber, R. (2001) Microbial diversity of the brine-seawater interface of the Kebrit deep, Red Sea, studied via 16S rRNA gene sequences and cultivation methods. Appl Environ Microbiol 67 : 3077 3085.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 3077-3085
    • Eder, W.1    Jahnke, L.L.2    Schmidt, M.3    Huber, R.4
  • 24
    • 0013208353 scopus 로고    scopus 로고
    • Isolation and characterization of novel psychrophilic, neutrophilic, Fe-oxidizing, chemolithoautotrophic α- And γ-proteobacteria from the deep sea
    • Edwards, K.J., Rogers, D.R., Wirsen, C.O. Mccollom, T.M. (2003) Isolation and characterization of novel psychrophilic, neutrophilic, Fe-oxidizing, chemolithoautotrophic α- and γ-proteobacteria from the deep sea. Appl Environ Microbiol 69 : 2906 2913.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 2906-2913
    • Edwards, K.J.1    Rogers, D.R.2    Wirsen, C.O.3    McCollom, T.M.4
  • 25
    • 16844376014 scopus 로고    scopus 로고
    • Molecular analysis of deep-sea hydrothermal vent aerobic methanotrophs by targeting genes of 16S rRNA and particulate methane monooxygenase
    • Elsaied, H.E., Hayashi, T. Naganuma, T. (2004) Molecular analysis of deep-sea hydrothermal vent aerobic methanotrophs by targeting genes of 16S rRNA and particulate methane monooxygenase. Mar Biotechnol 6 : 503 509.
    • (2004) Mar Biotechnol , vol.6 , pp. 503-509
    • Elsaied, H.E.1    Hayashi, T.2    Naganuma, T.3
  • 26
    • 0036275068 scopus 로고    scopus 로고
    • Neutrophilic Fe-oxidizing bacteria are abundant at the Loihi Seamount hydrothermal vents and play a major role in Fe oxide deposition
    • Emerson, D. Moyer, C.L. (2002) Neutrophilic Fe-oxidizing bacteria are abundant at the Loihi Seamount hydrothermal vents and play a major role in Fe oxide deposition. Appl Environ Microbiol 68 : 3085 3093.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 3085-3093
    • Emerson, D.1    Moyer, C.L.2
  • 27
    • 39849101191 scopus 로고    scopus 로고
    • A novel lineage of proteobacteria involved in formation of marine Fe-oxidizing microbial mat communities
    • doi: 610.1371/journal.pone.0000667.
    • Emerson, D., Rentz, J.A., Lilburn, T.G., Davis, R.E., Aldrich, H., Chan, C. Moyer, C.L. (2007) A novel lineage of proteobacteria involved in formation of marine Fe-oxidizing microbial mat communities. Plos ONE 2 : e667. doi: 610.1371/journal.pone.0000667.
    • (2007) Plos ONE , vol.2 , pp. 667
    • Emerson, D.1    Rentz, J.A.2    Lilburn, T.G.3    Davis, R.E.4    Aldrich, H.5    Chan, C.6    Moyer, C.L.7
  • 28
    • 26844541457 scopus 로고    scopus 로고
    • Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean
    • Francis, C.A., Roberts, K.J., Beman, J.M., Santoro, A.E. Oakley, B.B. (2005) Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean. Proc Natl Acad Sci USA 102 : 14683 14688.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 14683-14688
    • Francis, C.A.1    Roberts, K.J.2    Beman, J.M.3    Santoro, A.E.4    Oakley, B.B.5
  • 29
    • 0002603476 scopus 로고
    • Geology of the Mariana Trough
    • In. Taylor, B. (ed.). New York, USA. Plenum Press. pp.
    • Fryer, P. (1995) Geology of the Mariana Trough. In Backarc Basins: Tectonics and Magmatism. Taylor, B. (ed.). New York, USA : Plenum Press, pp. 237 279.
    • (1995) Backarc Basins: Tectonics and Magmatism. , pp. 237-279
    • Fryer, P.1
  • 30
    • 0030619262 scopus 로고    scopus 로고
    • Widespread archaea and novel bacteria from the deep sea as shown by 16s rRNA gene sequences
    • Fuhrman, J.A. Davis, A.A. (1997) Widespread archaea and novel bacteria from the deep sea as shown by 16s rRNA gene sequences. Mar Ecol Prog Ser 150 : 275 285.
    • (1997) Mar Ecol Prog ser , vol.150 , pp. 275-285
    • Fuhrman, J.A.1    Davis, A.A.2
  • 31
    • 0026525546 scopus 로고
    • Novel major archaebacterial group from marine plankton
    • Fuhrman, M., Davis, Jed, A. Kirkalison, A. (1992) Novel major archaebacterial group from marine plankton. Nature 356 : 148 149.
    • (1992) Nature , vol.356 , pp. 148-149
    • Fuhrman, M.1    Davis2    Jed, A.3    Kirkalison, A.4
  • 32
    • 0000803388 scopus 로고
    • The population frequencies of species and the estimation of population parameters
    • Good, I.J. (1953) The population frequencies of species and the estimation of population parameters. Biometrika 40 : 237 264.
    • (1953) Biometrika , vol.40 , pp. 237-264
    • Good, I.J.1
  • 33
    • 0029667158 scopus 로고    scopus 로고
    • Detection of stratified microbial populations related to Chlorobium and Fibrobacter species in the Atlantic and Pacific oceans
    • Gordon, D.A. Giovannoni, S.J. (1996) Detection of stratified microbial populations related to Chlorobium and Fibrobacter species in the Atlantic and Pacific oceans. Appl Environ Microbiol 62 : 1171 1177.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 1171-1177
    • Gordon, D.A.1    Giovannoni, S.J.2
  • 34
    • 0030899435 scopus 로고    scopus 로고
    • Deferribacter thermophilus gen. nov., sp. nov., a novel thermophilic manganese- and iron-reducing bacterium isolated from a petroleum reservoir
    • Greene, A.C., Patel, B.K.C. Sheehy, A.J. (1997) Deferribacter thermophilus gen. nov., sp. nov., a novel thermophilic manganese- and iron-reducing bacterium isolated from a petroleum reservoir. Int J Syst Bacteriol 47 : 505 509.
    • (1997) Int J Syst Bacteriol , vol.47 , pp. 505-509
    • Greene, A.C.1    Patel, B.K.C.2    Sheehy, A.J.3
  • 35
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon, S. Gascuel, O. (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52 : 696 704.
    • (2003) Syst Biol , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 36
    • 4644234005 scopus 로고    scopus 로고
    • Report on the discovery of Gallionella ferruginea from an active hydrothermal field in the deep sea
    • Halbach, M., Koschinsky, A. Halbach, P. (2001) Report on the discovery of Gallionella ferruginea from an active hydrothermal field in the deep sea. Interridge News 10 : 18 20.
    • (2001) Interridge News , vol.10 , pp. 18-20
    • Halbach, M.1    Koschinsky, A.2    Halbach, P.3
  • 38
    • 0000917309 scopus 로고
    • Explicit calculation of the rarefaction diversity measurement and the determination of sufficient sample size
    • Jr
    • Heck, K.L., Jr, Van Belle, G. Simberloff, D. (1975) Explicit calculation of the rarefaction diversity measurement and the determination of sufficient sample size. Ecology 56 : 1459 1461.
    • (1975) Ecology , vol.56 , pp. 1459-1461
    • Heck, K.L.1    Van Belle, G.2    Simberloff, D.3
  • 40
    • 0001294545 scopus 로고
    • Hydrothermal Fe and Si oxyhydroxide deposits from south Pacific intraplate volcanoes and East Pacific Rise axial and off-axial regions
    • Hekinian, R., Hoffert, M., Larque, P., Cheminee, J.-L., Stoffers, P. Bideau, D. (1993) Hydrothermal Fe and Si oxyhydroxide deposits from south Pacific intraplate volcanoes and East Pacific Rise axial and off-axial regions. Econ Geol 88 : 2095 2117.
    • (1993) Econ Geol , vol.88 , pp. 2095-2117
    • Hekinian, R.1    Hoffert, M.2    Larque, P.3    Cheminee, J.-L.4    Stoffers, P.5    Bideau, D.6
  • 41
    • 0034026744 scopus 로고    scopus 로고
    • Leptospirillum gen. nov. (ex markosyan 1972), nom. rev., including L. eptospirillum ferrooxidans sp. nov. (ex markosyan 1972), nom. rev. and Leptospirillum thermoferrooxidans sp. nov. (Golovacheva*et al.
    • Hippe, H. (2000) Leptospirillum gen. nov. (ex markosyan 1972), nom. rev., including L. eptospirillum ferrooxidans sp. nov. (ex markosyan 1972), nom. rev. and Leptospirillum thermoferrooxidans sp. nov. (Golovacheva et al. 1992). Int J Syst Evol Microbiol 50 : 501 503.
    • (2000) Int J Syst Evol Microbiol , vol.50 , pp. 501-503
    • Hippe, H.1
  • 42
    • 38449095881 scopus 로고    scopus 로고
    • Culture-dependent and - Independent characterization of microbial communities associated with a shallow submarine hydrothermal system occurring within a coral reef off Taketomi island, Japan
    • Hirayama, H., Sunamura, M., Takai, K., Nunoura, T., Noguchi, T., Oida, H., et al. (2007) Culture-dependent and - independent characterization of microbial communities associated with a shallow submarine hydrothermal system occurring within a coral reef off Taketomi island, Japan. Appl Environ Microbiol 73 : 7642 7656.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 7642-7656
    • Hirayama, H.1    Sunamura, M.2    Takai, K.3    Nunoura, T.4    Noguchi, T.5    Oida, H.6
  • 43
    • 0028791540 scopus 로고
    • Evidence that participate methane monooxygenase and ammonia monooxygenase may be evolutionarily related
    • Holmes, A., Costello, A., Lidstrom, M. Murrell, C. (1995) Evidence that participate methane monooxygenase and ammonia monooxygenase may be evolutionarily related. FEMS Microbiol Lett 132 : 203 208.
    • (1995) FEMS Microbiol Lett , vol.132 , pp. 203-208
    • Holmes, A.1    Costello, A.2    Lidstrom, M.3    Murrell, C.4
  • 44
    • 34347273029 scopus 로고    scopus 로고
    • Geochemistry and morphology of metalliferous sediments and oxyhydroxides from the Endeavour segment, Juan de Fuca Ridge
    • Hrischeva, E. Scott, S.D. (2007) Geochemistry and morphology of metalliferous sediments and oxyhydroxides from the Endeavour segment, Juan de Fuca Ridge. Geochim Cosmochim Acta 71 : 3476 3497.
    • (2007) Geochim Cosmochim Acta , vol.71 , pp. 3476-3497
    • Hrischeva, E.1    Scott, S.D.2
  • 45
    • 0037375056 scopus 로고    scopus 로고
    • Bacterial diversity in a subseafloor habitat following a deep-sea volcanic eruption
    • Huber, J.A., Butterfield, D.A. Baross, J.A. (2003) Bacterial diversity in a subseafloor habitat following a deep-sea volcanic eruption. FEMS Microbiol Ecol 43 : 393 409.
    • (2003) FEMS Microbiol Ecol , vol.43 , pp. 393-409
    • Huber, J.A.1    Butterfield, D.A.2    Baross, J.A.3
  • 48
    • 0031912606 scopus 로고    scopus 로고
    • Novel division level bacterial diversity in a Yellowstone hot spring
    • Hugenholtz, P., Pitulle, C., Hershberger, K.L. Pace, N.R. (1998) Novel division level bacterial diversity in a Yellowstone hot spring. J Bacteriol 180 : 366 376.
    • (1998) J Bacteriol , vol.180 , pp. 366-376
    • Hugenholtz, P.1    Pitulle, C.2    Hershberger, K.L.3    Pace, N.R.4
  • 49
    • 0032005674 scopus 로고    scopus 로고
    • Hydrothermal sulfide-bearing Fe-Si oxyhydroxide deposits from the Coriolis troughs, Vanuatu backarc, southwestern Pacific
    • Iizasa, K., Kawasaki, K., Maeda, K., Matsumoto, T., Saito, N. Hirai, K. (1998) Hydrothermal sulfide-bearing Fe-Si oxyhydroxide deposits from the Coriolis troughs, Vanuatu backarc, southwestern Pacific. Mar Geol 145 : 1 21.
    • (1998) Mar Geol , vol.145 , pp. 1-21
    • Iizasa, K.1    Kawasaki, K.2    Maeda, K.3    Matsumoto, T.4    Saito, N.5    Hirai, K.6
  • 50
    • 2142857748 scopus 로고    scopus 로고
    • Microbial communities associated with geological horizons in coastal subseafloor sediments from the sea of Okhotsk
    • Inagaki, F., Suzuki, M., Takai, K., Oida, H., Sakamoto, T., Aoki, K., et al. (2003a) Microbial communities associated with geological horizons in coastal subseafloor sediments from the sea of Okhotsk. Appl Environ Microbiol 69 : 7224 7235.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 7224-7235
    • Inagaki, F.1    Suzuki, M.2    Takai, K.3    Oida, H.4    Sakamoto, T.5    Aoki, K.6
  • 51
    • 0345328152 scopus 로고    scopus 로고
    • Sulfurimonas autotrophica gen. nov., sp. nov., a novel sulfur-oxidizing epsilon-proteobacterium isolated from hydrothermal sediments in the mid-Okinawa Trough
    • Inagaki, F., Takai, K., Kobayashi, H., Nealson, K.H. Horikoshi, K. (2003b) Sulfurimonas autotrophica gen. nov., sp. nov., a novel sulfur-oxidizing epsilon-proteobacterium isolated from hydrothermal sediments in the mid-Okinawa Trough. Int J Syst Evol Microbiol 53 : 1801 1805.
    • (2003) Int J Syst Evol Microbiol , vol.53 , pp. 1801-1805
    • Inagaki, F.1    Takai, K.2    Kobayashi, H.3    Nealson, K.H.4    Horikoshi, K.5
  • 52
    • 10444248885 scopus 로고    scopus 로고
    • Characterization of C1-metabolizing prokaryotic communities in methane seep habitats at the Kuroshima knoll, southern Ryukyu arc, by analyzing pmoA, mmoX, mxaF, mcrA, and 16S rRNA genes
    • Inagaki, F., Tsunogai, U., Suzuki, M., Kosaka, A., Machiyama, H., Takai, K., et al. (2004) Characterization of C1-metabolizing prokaryotic communities in methane seep habitats at the Kuroshima knoll, southern Ryukyu arc, by analyzing pmoA, mmoX, mxaF, mcrA, and 16S rRNA genes. Appl Environ Microbiol 70 : 7445 7455.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 7445-7455
    • Inagaki, F.1    Tsunogai, U.2    Suzuki, M.3    Kosaka, A.4    MacHiyama, H.5    Takai, K.6
  • 53
    • 0002313397 scopus 로고
    • Hydrothermal activity related to arc-backarc magmatism in the western Pacific
    • In. Taylor, B. (ed.). New York, USA. Plenum Press. pp.
    • Ishibashi, J. Urabe, T. (1995) Hydrothermal activity related to arc-backarc magmatism in the western Pacific. In Backarc Basins: Tectonics and Magmatism. Taylor, B. (ed.). New York, USA : Plenum Press, pp. 451 495.
    • (1995) Backarc Basins: Tectonics and Magmatism. , pp. 451-495
    • Ishibashi, J.1    Urabe, T.2
  • 54
    • 68249143272 scopus 로고    scopus 로고
    • Geochemistry of hydrothermal fluids in south Mariana backarc spreading center
    • Fall Meet. Suppl., Abstract V44A
    • Ishibashi, J., Yamanaka, T., Kimura, H., Hirota, A., Toki, T., Tsunogai, U., et al. (2004) Geochemistry of hydrothermal fluids in south Mariana backarc spreading center. Eos Trans AGU 85 : Fall Meet. Suppl., Abstract V44A-05.
    • (2004) Eos Trans AGU
    • Ishibashi, J.1    Yamanaka, T.2    Kimura, H.3    Hirota, A.4    Toki, T.5    Tsunogai, U.6
  • 55
    • 0029157576 scopus 로고
    • The genus Methylophaga, a new line of descent within phylogenetic branch gamma of proteobacteria
    • Janvier, M. Grimont, P.A.D. (1995) The genus Methylophaga, a new line of descent within phylogenetic branch gamma of proteobacteria. Res Microbiol 146 : 543 550.
    • (1995) Res Microbiol , vol.146 , pp. 543-550
    • Janvier, M.1    Grimont, P.A.D.2
  • 56
    • 0024079092 scopus 로고
    • Filamentous iron-silica deposits from modern and ancient hydrothermal sites
    • Juniper, S.K. Fouquet, Y. (1988) Filamentous iron-silica deposits from modern and ancient hydrothermal sites. Can Mineral 26 : 859 869.
    • (1988) Can Mineral , vol.26 , pp. 859-869
    • Juniper, S.K.1    Fouquet, Y.2
  • 57
    • 0030894624 scopus 로고    scopus 로고
    • Novel group within the kingdom crenarchaeota from boreal forest soil
    • Jurgens, G., Lindstrom, K. Saano, A. (1997) Novel group within the kingdom crenarchaeota from boreal forest soil. Appl Environ Microbiol 63 : 803 805.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 803-805
    • Jurgens, G.1    Lindstrom, K.2    Saano, A.3
  • 58
    • 34848830820 scopus 로고    scopus 로고
    • Phylogenetic diversity and distribution of dissimilatory sulfite reductase genes from deep-sea sediment cores
    • Kaneko, R., Hayashi, T., Tanahashi, M. Naganuma, T. (2007) Phylogenetic diversity and distribution of dissimilatory sulfite reductase genes from deep-sea sediment cores. Mar Biotechnol 9 : 429 436.
    • (2007) Mar Biotechnol , vol.9 , pp. 429-436
    • Kaneko, R.1    Hayashi, T.2    Tanahashi, M.3    Naganuma, T.4
  • 59
    • 0002896595 scopus 로고
    • Ecology of free-living, hydrothermal vent microbial communities
    • In. Karl, D.M. (ed.). Boca Raton, FL, USA. CRC Press. pp.
    • Karl, D.M. (1995) Ecology of free-living, hydrothermal vent microbial communities. In The Microbiology of Deep-Sea Hydrothermal Vents. Karl, D.M. (ed.). Boca Raton, FL, USA : CRC Press, pp. 35 124.
    • (1995) The Microbiology of Deep-Sea Hydrothermal Vents. , pp. 35-124
    • Karl, D.M.1
  • 60
    • 0035945618 scopus 로고    scopus 로고
    • Archaeal dominance in the mesopelagic zone of the Pacific Ocean
    • Karner, M.B., Delong, E.F. Karl, D.M. (2001) Archaeal dominance in the mesopelagic zone of the Pacific Ocean. Nature 409 : 507 510.
    • (2001) Nature , vol.409 , pp. 507-510
    • Karner, M.B.1    Delong, E.F.2    Karl, D.M.3
  • 61
    • 33846452179 scopus 로고    scopus 로고
    • Diversity of archaea in marine sediments from Skan bay, Alaska, including cultivated methanogens, and description of Methanogenium boonei sp. nov
    • Kendall, M.M., Wardlaw, G.D., Tang, C.F., Bonin, A.S., Liu, Y. Valentine, D.L. (2007) Diversity of archaea in marine sediments from Skan bay, Alaska, including cultivated methanogens, and description of Methanogenium boonei sp. nov. Appl Environ Microbiol 73 : 407 414.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 407-414
    • Kendall, M.M.1    Wardlaw, G.D.2    Tang, C.F.3    Bonin, A.S.4    Liu, Y.5    Valentine, D.L.6
  • 62
    • 0042575641 scopus 로고    scopus 로고
    • Characterization of bacteriogenic iron oxide deposits from axial volcano, Juan de Fuca Ridge, northeast Pacific Ocean
    • Kennedy, C.B., Scott, S.D. Ferris, F.G. (2003) Characterization of bacteriogenic iron oxide deposits from axial volcano, Juan de Fuca Ridge, northeast Pacific Ocean. Geomicrobiol J 20 : 199 214.
    • (2003) Geomicrobiol J , vol.20 , pp. 199-214
    • Kennedy, C.B.1    Scott, S.D.2    Ferris, F.G.3
  • 63
    • 34247525500 scopus 로고    scopus 로고
    • Selective phylogenetic analysis targeting 16S rRNA genes of hyperthermophilic archaea in the deep-subsurface hot biosphere
    • Kimura, H., Ishibashi, J.-I., Masuda, H., Kato, K. Hanada, S. (2007) Selective phylogenetic analysis targeting 16S rRNA genes of hyperthermophilic archaea in the deep-subsurface hot biosphere. Appl Environ Microbiol 73 : 2110 2117.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 2110-2117
    • Kimura, H.1    Ishibashi, J.-I.2    Masuda, H.3    Kato, K.4    Hanada, S.5
  • 65
    • 58149179980 scopus 로고    scopus 로고
    • RrnDB: Documenting the number of rRNA and tRNA genes in bacteria and archaea
    • III
    • Lee, Z.M.-P., Bussema, C., III, Schmidt, T.M. (2009) rrnDB: documenting the number of rRNA and tRNA genes in bacteria and archaea. Nucleic Acids Res 37 : D489 D493.
    • (2009) Nucleic Acids Res , vol.37
    • Lee, Z.M.-P.1    Bussema, C.2    Schmidt, T.M.3
  • 66
    • 33846033212 scopus 로고    scopus 로고
    • Diversity and abundance of sulfate-reducing microorganisms in the sulfate and methane zones of a marine sediment, Black Sea
    • Leloup, J., Loy, A., Knab, N.J., Borowski, C., Wagner, M. Jørgensen, B.B. (2007) Diversity and abundance of sulfate-reducing microorganisms in the sulfate and methane zones of a marine sediment, Black Sea. Environ Microbiol 9 : 131 142.
    • (2007) Environ Microbiol , vol.9 , pp. 131-142
    • Leloup, J.1    Loy, A.2    Knab, N.J.3    Borowski, C.4    Wagner, M.5    Jørgensen, B.B.6
  • 67
    • 33751019178 scopus 로고    scopus 로고
    • An anaerobic methane-oxidizing community of ANME-1b archaea in hypersaline Gulf of Mexico sediments
    • Lloyd, K.G., Lapham, L. Teske, A. (2006) An anaerobic methane-oxidizing community of ANME-1b archaea in hypersaline Gulf of Mexico sediments. Appl Environ Microbiol 72 : 7218 7230.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 7218-7230
    • Lloyd, K.G.1    Lapham, L.2    Teske, A.3
  • 68
    • 51649116822 scopus 로고    scopus 로고
    • ProbeCheck - A central resource for evaluating oligonucleotide probe coverage and specificity
    • Loy, A., Arnold, R., Tischler, P., Rattei, T., Wagner, M. Horn, M. (2008) probeCheck - a central resource for evaluating oligonucleotide probe coverage and specificity. Environ Microbiol 10 : 2894 2898.
    • (2008) Environ Microbiol , vol.10 , pp. 2894-2898
    • Loy, A.1    Arnold, R.2    Tischler, P.3    Rattei, T.4    Wagner, M.5    Horn, M.6
  • 71
    • 20444440388 scopus 로고    scopus 로고
    • An improved method for counting bacteria from sediments and turbid environments by epifluorescence microscopy
    • Lunau, M., Lemke, A., Walther, K., Martens-Habbena, W. Simon, M. (2005) An improved method for counting bacteria from sediments and turbid environments by epifluorescence microscopy. Environ Microbiol 7 : 961 968.
    • (2005) Environ Microbiol , vol.7 , pp. 961-968
    • Lunau, M.1    Lemke, A.2    Walther, K.3    Martens-Habbena, W.4    Simon, M.5
  • 72
    • 0031240626 scopus 로고    scopus 로고
    • Geochemical constraints on chemolithoautotrophic metabolism by microorganisms in seafloor hydrothermal systems
    • McCollom, T.M. Shock, E.L. (1997) Geochemical constraints on chemolithoautotrophic metabolism by microorganisms in seafloor hydrothermal systems. Geochim Cosmochim Acta 61 : 4375 4391.
    • (1997) Geochim Cosmochim Acta , vol.61 , pp. 4375-4391
    • McCollom, T.M.1    Shock, E.L.2
  • 73
    • 33644829921 scopus 로고    scopus 로고
    • Archaeal and bacterial communities in geochemically diverse hot springs of Yellowstone national park, USA
    • Meyer-Dombard, D.R., Shock, E.L. Amend, J.P. (2005) Archaeal and bacterial communities in geochemically diverse hot springs of Yellowstone national park, USA. Geobiology 3 : 211 227.
    • (2005) Geobiology , vol.3 , pp. 211-227
    • Meyer-Dombard, D.R.1    Shock, E.L.2    Amend, J.P.3
  • 74
    • 34247847886 scopus 로고    scopus 로고
    • Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey bay and the north Pacific subtropical gyre
    • Mincer, T.J., Church, M.J., Taylor, L.T., Preston, C., Karl, D.M. Delong, E.F. (2007) Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey bay and the north Pacific subtropical gyre. Environ Microbiol 9 : 1162 1175.
    • (2007) Environ Microbiol , vol.9 , pp. 1162-1175
    • Mincer, T.J.1    Church, M.J.2    Taylor, L.T.3    Preston, C.4    Karl, D.M.5    Delong, E.F.6
  • 75
    • 0028976424 scopus 로고
    • Phylogenetic diversity of the bacterial community from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii
    • Moyer, C., Dobbs, F. Karl, D. (1995) Phylogenetic diversity of the bacterial community from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii. Appl Environ Microbiol 61 : 1555 1562.
    • (1995) Appl Environ Microbiol , vol.61 , pp. 1555-1562
    • Moyer, C.1    Dobbs, F.2    Karl, D.3
  • 77
    • 0029097821 scopus 로고
    • Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments
    • Muyzer, G., Teske, A., Wirsen, C. Jannasch, H. (1995) Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments. Arch Microbiol 164 : 165 172.
    • (1995) Arch Microbiol , vol.164 , pp. 165-172
    • Muyzer, G.1    Teske, A.2    Wirsen, C.3    Jannasch, H.4
  • 78
    • 45149091572 scopus 로고    scopus 로고
    • Deep-sea vent chemoautotrophs: Diversity, biochemistry and ecological significance
    • Nakagawa, S. Takai, K. (2008) Deep-sea vent chemoautotrophs: Diversity, biochemistry and ecological significance. FEMS Microbiol Ecol 65 : 1 14.
    • (2008) FEMS Microbiol Ecol , vol.65 , pp. 1-14
    • Nakagawa, S.1    Takai, K.2
  • 79
    • 25144503993 scopus 로고    scopus 로고
    • Distribution, phylogenetic diversity and physiological characteristics of epsilon-proteobacteria in a deep-sea hydrothermal field
    • Nakagawa, S., Takai, K., Inagaki, F., Hirayama, H., Nunoura, T., Horikoshi, K. Sako, Y. (2005a) Distribution, phylogenetic diversity and physiological characteristics of epsilon-proteobacteria in a deep-sea hydrothermal field. Environ Microbiol 7 : 1619 1632.
    • (2005) Environ Microbiol , vol.7 , pp. 1619-1632
    • Nakagawa, S.1    Takai, K.2    Inagaki, F.3    Hirayama, H.4    Nunoura, T.5    Horikoshi, K.6    Sako, Y.7
  • 80
    • 23744451309 scopus 로고    scopus 로고
    • Variability in microbial community and venting chemistry in a sediment-hosted backarc hydrothermal system: Impacts of subseafloor phase-separation
    • Nakagawa, S., Takai, K., Inagaki, F., Chiba, H., Ishibashi, J.-I., Kataoka, S., et al. (2005b) Variability in microbial community and venting chemistry in a sediment-hosted backarc hydrothermal system: Impacts of subseafloor phase-separation. FEMS Microbiol Ecol 54 : 141 155.
    • (2005) FEMS Microbiol Ecol , vol.54 , pp. 141-155
    • Nakagawa, S.1    Takai, K.2    Inagaki, F.3    Chiba, H.4    Ishibashi, J.-I.5    Kataoka, S.6
  • 82
    • 1842524072 scopus 로고    scopus 로고
    • Phylogenetic diversity of sulfate-reducing prokaryotes in active deep-sea hydrothermal vent chimney structures
    • Nakagawa, T., Nakagawa, S., Inagaki, F., Takai, K. Horikoshi, K. 2004a) Phylogenetic diversity of sulfate-reducing prokaryotes in active deep-sea hydrothermal vent chimney structures. FEMS Microbiol Lett 232 : 145 152.
    • (2004) FEMS Microbiol Lett , vol.232 , pp. 145-152
    • Nakagawa, T.1    Nakagawa, S.2    Inagaki, F.3    Takai, K.4    Horikoshi, K.5
  • 83
    • 0347760429 scopus 로고    scopus 로고
    • Analysis of dissimilatory sulfite reductase and 16S rRNA gene fragments from deep-sea hydrothermal sites of the Suiyo Seamount, Izu-Bonin Arc, Western Pacific
    • Nakagawa, T., Ishibashi, J.-I., Maruyama, A., Yamanaka, T., Morimoto, Y., Kimura, H., et al. (2004b) Analysis of dissimilatory sulfite reductase and 16S rRNA gene fragments from deep-sea hydrothermal sites of the Suiyo Seamount, Izu-Bonin Arc, Western Pacific. Appl Environ Microbiol 70 : 393 403.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 393-403
    • Nakagawa, T.1    Ishibashi, J.-I.2    Maruyama, A.3    Yamanaka, T.4    Morimoto, Y.5    Kimura, H.6
  • 84
    • 17844400954 scopus 로고    scopus 로고
    • Diversity of bacteria and archaea associated with a carbonate-rich metalliferous sediment sample from the Rainbow vent field on the Mid-Atlantic Ridge
    • Nercessian, O., Fouquet, Y., Pierre, C., Prieur, D. Jeanthon, C. (2005a) Diversity of bacteria and archaea associated with a carbonate-rich metalliferous sediment sample from the Rainbow vent field on the Mid-Atlantic Ridge. Environ Microbiol 7 : 698 714.
    • (2005) Environ Microbiol , vol.7 , pp. 698-714
    • Nercessian, O.1    Fouquet, Y.2    Pierre, C.3    Prieur, D.4    Jeanthon, C.5
  • 85
    • 12544256650 scopus 로고    scopus 로고
    • Diversity of functional genes of methanogens, methanotrophs and sulfate reducers in deep-sea hydrothermal environments
    • Nercessian, O., Bienvenu, N., Moreira, D., Prieur, D. Jeanthon, C. (2005b) Diversity of functional genes of methanogens, methanotrophs and sulfate reducers in deep-sea hydrothermal environments. Environ Microbiol 7 : 118 132.
    • (2005) Environ Microbiol , vol.7 , pp. 118-132
    • Nercessian, O.1    Bienvenu, N.2    Moreira, D.3    Prieur, D.4    Jeanthon, C.5
  • 86
    • 28644447444 scopus 로고    scopus 로고
    • Genetic and functional properties of uncultivated thermophilic crenarchaeotes from a subsurface gold mine as revealed by analysis of genome fragments
    • Nunoura, T., Hirayama, H., Takami, H., Oida, H., Nishi, S., Shimamura, S., et al. (2005) Genetic and functional properties of uncultivated thermophilic crenarchaeotes from a subsurface gold mine as revealed by analysis of genome fragments. Environ Microbiol 7 : 1967 1984.
    • (2005) Environ Microbiol , vol.7 , pp. 1967-1984
    • Nunoura, T.1    Hirayama, H.2    Takami, H.3    Oida, H.4    Nishi, S.5    Shimamura, S.6
  • 87
    • 27644496091 scopus 로고    scopus 로고
    • Program distributed by the author. Uppsala, Sweden. Evolutionary Biology Centre, Uppsala University.
    • Nylander, J.A.A. (2004) MrAIC.pl. Program distributed by the author. Uppsala, Sweden : Evolutionary Biology Centre, Uppsala University.
    • (2004) MrAIC.pl.
    • Nylander, J.A.A.1
  • 89
    • 0033823565 scopus 로고    scopus 로고
    • Novel bacterial and archaeal lineages from an in situ growth chamber deployed at a Mid-Atlantic Ridge hydrothermal vent
    • Reysenbach, A.-L., Longnecker, K. Kirshtein, J. (2000) Novel bacterial and archaeal lineages from an in situ growth chamber deployed at a Mid-Atlantic Ridge hydrothermal vent. Appl Environ Microbiol 66 : 3798 3806.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 3798-3806
    • Reysenbach, A.-L.1    Longnecker, K.2    Kirshtein, J.3
  • 90
    • 33644824478 scopus 로고    scopus 로고
    • Archaeal diversity and geochemical energy yields in a geothermal well on vulcano island, Italy
    • Rogers, K.L. Amend, J.P. (2005) Archaeal diversity and geochemical energy yields in a geothermal well on vulcano island, Italy. Geobiology 3 : 319 332.
    • (2005) Geobiology , vol.3 , pp. 319-332
    • Rogers, K.L.1    Amend, J.P.2
  • 92
    • 15444362001 scopus 로고    scopus 로고
    • Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
    • Schloss, P.D. Handelsman, J. (2005) Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol 71 : 1501 1506.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 1501-1506
    • Schloss, P.D.1    Handelsman, J.2
  • 93
    • 0038654460 scopus 로고    scopus 로고
    • Incidence and diversity of microorganisms within the walls of an active deep-sea sulfide chimney
    • Schrenk, M.O., Kelley, D.S., Delaney, J.R. Baross, A.J.A. (2003) Incidence and diversity of microorganisms within the walls of an active deep-sea sulfide chimney. Appl Environ Microbiol 69 : 3580 3592.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 3580-3592
    • Schrenk, M.O.1    Kelley, D.S.2    Delaney, J.R.3    Baross, A.J.A.4
  • 96
    • 0033386679 scopus 로고    scopus 로고
    • Thermodesulfobacterium hveragerdense sp. nov., and Thermodesulfovibrio islandicus sp. nov., two thermophilic sulfate reducing bacteria isolated from a icelandic hot spring
    • Sonne-Hansen, J. Ahring, B.K. (1999) Thermodesulfobacterium hveragerdense sp. nov., and Thermodesulfovibrio islandicus sp. nov., two thermophilic sulfate reducing bacteria isolated from a icelandic hot spring. Syst Appl Microbiol 22 : 559 564.
    • (1999) Syst Appl Microbiol , vol.22 , pp. 559-564
    • Sonne-Hansen, J.1    Ahring, B.K.2
  • 97
    • 0033760479 scopus 로고    scopus 로고
    • Quantitative analysis of small-subunit rRNA genes in mixed microbial populations via 5′-nuclease assays
    • Suzuki, M.T., Taylor, L.T. Delong, E.F. (2000) Quantitative analysis of small-subunit rRNA genes in mixed microbial populations via 5′-nuclease assays. Appl Environ Microbiol 66 : 4605 4614.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 4605-4614
    • Suzuki, M.T.1    Taylor, L.T.2    Delong, E.F.3
  • 98
    • 2342633066 scopus 로고    scopus 로고
    • Microbial diversity in inactive chimney structures from deep-sea hydrothermal systems
    • Suzuki, Y., Inagaki, F., Takai, K., Nealson, K.H. Horikoshi, K. (2004) Microbial diversity in inactive chimney structures from deep-sea hydrothermal systems. Microbial Ecol 47 : 186 196.
    • (2004) Microbial Ecol , vol.47 , pp. 186-196
    • Suzuki, Y.1    Inagaki, F.2    Takai, K.3    Nealson, K.H.4    Horikoshi, K.5
  • 99
    • 0344035670 scopus 로고    scopus 로고
    • Genetic diversity of archaea in deep-sea hydrothermal vent environments
    • Takai, K. Horikoshi, K. (1999) Genetic diversity of archaea in deep-sea hydrothermal vent environments. Genetics 152 : 1285 1297.
    • (1999) Genetics , vol.152 , pp. 1285-1297
    • Takai, K.1    Horikoshi, K.2
  • 100
    • 0033766069 scopus 로고    scopus 로고
    • Rapid detection and quantification of members of the archaeal community by quantitative PCR using fluorogenic probes
    • Takai, K. Horikoshi, K. (2000) Rapid detection and quantification of members of the archaeal community by quantitative PCR using fluorogenic probes. Appl Environ Microbiol 66 : 5066 5072.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 5066-5072
    • Takai, K.1    Horikoshi, K.2
  • 101
  • 103
    • 9744226636 scopus 로고    scopus 로고
    • Geochemical and microbiological evidence for a hydrogen-based, hyperthermophilic subsurface lithoautotrophic microbial ecosystem (HyperSLiME) beneath an active deep-sea hydrothermal field
    • Takai, K., Gamo, T., Tsunogai, U., Nakayama, N., Hirayama, H., Nealson, K.H. Horikoshi, K. (2004a) Geochemical and microbiological evidence for a hydrogen-based, hyperthermophilic subsurface lithoautotrophic microbial ecosystem (HyperSLiME) beneath an active deep-sea hydrothermal field. Extremophiles 8 : 269 282.
    • (2004) Extremophiles , vol.8 , pp. 269-282
    • Takai, K.1    Gamo, T.2    Tsunogai, U.3    Nakayama, N.4    Hirayama, H.5    Nealson, K.H.6    Horikoshi, K.7
  • 104
    • 9744270182 scopus 로고    scopus 로고
    • Spatial distribution of marine crenarchaeota group i in the vicinity of deep-sea hydrothermal systems
    • Takai, K., Oida, H., Suzuki, Y., Hirayama, H., Nakagawa, S., Nunoura, T., et al. (2004b) Spatial distribution of marine crenarchaeota group I in the vicinity of deep-sea hydrothermal systems. Appl Environ Microbiol 70 : 2404 2413.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 2404-2413
    • Takai, K.1    Oida, H.2    Suzuki, Y.3    Hirayama, H.4    Nakagawa, S.5    Nunoura, T.6
  • 105
    • 9744273114 scopus 로고    scopus 로고
    • Thiomicrospira thermophila sp. nov., a novel microaerobic, thermotolerant, sulfur-oxidizing chemolithomixotroph isolated from a deep-sea hydrothermal fumarole in the TOTO caldera, Mariana arc, Western Pacific
    • Takai, K., Hirayama, H., Nakagawa, T., Suzuki, Y., Nealson, K.H. Horikoshi, K. (2004c) Thiomicrospira thermophila sp. nov., a novel microaerobic, thermotolerant, sulfur-oxidizing chemolithomixotroph isolated from a deep-sea hydrothermal fumarole in the TOTO caldera, Mariana arc, Western Pacific. Int J Syst Evol Microbiol 54 : 2325 2333.
    • (2004) Int J Syst Evol Microbiol , vol.54 , pp. 2325-2333
    • Takai, K.1    Hirayama, H.2    Nakagawa, T.3    Suzuki, Y.4    Nealson, K.H.5    Horikoshi, K.6
  • 106
    • 13244255659 scopus 로고    scopus 로고
    • Lebetimonas acidiphila gen. nov., sp. nov., a novel thermophilic, acidophilic, hydrogen-oxidizing chemolithoautotroph within the 'epsilonproteobacteria', isolated from a deep-sea hydrothermal fumarole in the Mariana arc
    • Takai, K., Hirayama, H., Nakagawa, T., Suzuki, Y., Nealson, K.H. Horikoshi, K. (2005) Lebetimonas acidiphila gen. nov., sp. nov., a novel thermophilic, acidophilic, hydrogen-oxidizing chemolithoautotroph within the 'epsilonproteobacteria', isolated from a deep-sea hydrothermal fumarole in the Mariana arc. Int J Syst Evol Microbiol 55 : 183 189.
    • (2005) Int J Syst Evol Microbiol , vol.55 , pp. 183-189
    • Takai, K.1    Hirayama, H.2    Nakagawa, T.3    Suzuki, Y.4    Nealson, K.H.5    Horikoshi, K.6
  • 107
    • 51449085596 scopus 로고    scopus 로고
    • Variability in the microbial communities and hydrothermal fluid chemistry at the newly discovered mariner hydrothermal field, southern Lau basin
    • doi: 02010.01029/02007JG000636.
    • Takai, K., Nunoura, T., Ishibashi, J.-I., Lupton, J., Suzuki, R., Hamasaki, H., et al. (2008) Variability in the microbial communities and hydrothermal fluid chemistry at the newly discovered mariner hydrothermal field, southern Lau basin. J Geophys Res 113 : G02031. doi: 02010.01029/02007JG000636.
    • (2008) J Geophys Res , vol.113 , pp. 02031
    • Takai, K.1    Nunoura, T.2    Ishibashi, J.-I.3    Lupton, J.4    Suzuki, R.5    Hamasaki, H.6
  • 108
    • 0032932428 scopus 로고    scopus 로고
    • Rapid microbial production of filamentous sulfur mats at hydrothermal vents
    • Taylor, C.D., Wirsen, C.O. Gaill, F. (1999) Rapid microbial production of filamentous sulfur mats at hydrothermal vents. Appl Environ Microbiol 65 : 2253 2255.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 2253-2255
    • Taylor, C.D.1    Wirsen, C.O.2    Gaill, F.3
  • 109
    • 85023884574 scopus 로고    scopus 로고
    • Microbial communities of deep marine subsurface sediments: Molecular and cultivation surveys
    • DOI 10.1080/01490450600875613, PII L47X7L18461H32M2
    • Teske, A. (2006) Microbial communities of deep marine subsurface sediments: Molecular and cultivation surveys. Geomicrobiol J 23 : 357 368. (Pubitemid 44446542)
    • (2006) Handbook of Environmental Chemistry, Volume 5: Water Pollution , vol.23 , Issue.6 , pp. 357-368
    • Teske, A.P.1
  • 110
    • 0036205605 scopus 로고    scopus 로고
    • Microbial diversity of hydrothermal sediments in the Guaymas Basin: Evidence for anaerobic methanotrophic communities
    • Teske, A., Hinrichs, K.-U., Edgcomb, V., De Vera Gomez, A., Kysela, D., Sylva, S.P., et al. (2002) Microbial diversity of hydrothermal sediments in the Guaymas Basin: Evidence for anaerobic methanotrophic communities. Appl Environ Microbiol 68 : 1994 2007.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 1994-2007
    • Teske, A.1    Hinrichs, K.-U.2    Edgcomb, V.3    De Vera Gomez, A.4    Kysela, D.5    Sylva, S.P.6
  • 111
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL-X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J., Gibson, T., Plewniak, F., Jeanmougin, F. Higgins, D. (1997) The CLUSTAL-X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25 : 4876 4882.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.1    Gibson, T.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.5
  • 112
    • 0032868072 scopus 로고    scopus 로고
    • Population structure and phylogenetic characterization of marine benthic archaea in deep-sea sediments
    • Vetriani, C., Jannasch, H.W., Macgregor, B.J., Stahl, D.A. Reysenbach, A.-L. (1999) Population structure and phylogenetic characterization of marine benthic archaea in deep-sea sediments. Appl Environ Microbiol 65 : 4375 4384.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 4375-4384
    • Vetriani, C.1    Jannasch, H.W.2    MacGregor, B.J.3    Stahl, D.A.4    Reysenbach, A.-L.5
  • 113
    • 0032463021 scopus 로고    scopus 로고
    • Phylogeny of dissimilatory sulfite reductases supports an early origin of sulfate respiration
    • Wagner, M., Roger, A.J., Flax, J.L., Brusseau, G.A. Stahl, D.A. (1998) Phylogeny of dissimilatory sulfite reductases supports an early origin of sulfate respiration. J Bacteriol 180 : 2975 2982.
    • (1998) J Bacteriol , vol.180 , pp. 2975-2982
    • Wagner, M.1    Roger, A.J.2    Flax, J.L.3    Brusseau, G.A.4    Stahl, D.A.5
  • 114
    • 31144433158 scopus 로고    scopus 로고
    • Methylobacter tundripaludum sp. nov., a methane-oxidizing bacterium from arctic wetland soil on the Svalbard islands, Norway (78°N)
    • Wartiainen, I., Hestnes, A.G., Mcdonald, I.R. Svenning, M.M. (2006) Methylobacter tundripaludum sp. nov., a methane-oxidizing bacterium from arctic wetland soil on the Svalbard islands, Norway (78°N). Int J Syst Evol Microbiol 56 : 109 113.
    • (2006) Int J Syst Evol Microbiol , vol.56 , pp. 109-113
    • Wartiainen, I.1    Hestnes, A.G.2    McDonald, I.R.3    Svenning, M.M.4
  • 115
    • 0002740689 scopus 로고
    • Nitrospira marina gen. nov. sp. nov.: A chemolithotrophic nitrite-oxidizing bacterium
    • Watson, S.W., Bock, E., Valois, F.W., Waterbury, J.B. Schlosser, U. (1986) Nitrospira marina gen. nov. sp. nov.: a chemolithotrophic nitrite-oxidizing bacterium. Arch Microbiol 144 : 1 7.
    • (1986) Arch Microbiol , vol.144 , pp. 1-7
    • Watson, S.W.1    Bock, E.2    Valois, F.W.3    Waterbury, J.B.4    Schlosser, U.5
  • 116
    • 68249152509 scopus 로고    scopus 로고
    • Hydrothermal venting in the southern most portion of the Mariana backarc spreading center at 12.57 degrees N
    • Fall Meet. Suppl., Abstract T32A
    • Wheat, C.G., Fryer, P., Hulme, S., Becker, N., Curtis, A. Moyer, C. (2003) Hydrothermal venting in the southern most portion of the Mariana backarc spreading center at 12.57 degrees N. Eos Trans AGU 84 : Fall Meet. Suppl., Abstract T32A-0920.
    • (2003) Eos Trans AGU , vol.84-920
    • Wheat, C.G.1    Fryer, P.2    Hulme, S.3    Becker, N.4    Curtis, A.5    Moyer, C.6
  • 117
    • 33745797480 scopus 로고    scopus 로고
    • Diversity of functional genes for methanotrophs in sediments associated with gas hydrates and hydrocarbon seeps in the Gulf of Mexico
    • Yan, T., Ye, Q., Zhou, J. Zhang, C.L. (2006) Diversity of functional genes for methanotrophs in sediments associated with gas hydrates and hydrocarbon seeps in the Gulf of Mexico. FEMS Microbiol Ecol 57 : 251 259.
    • (2006) FEMS Microbiol Ecol , vol.57 , pp. 251-259
    • Yan, T.1    Ye, Q.2    Zhou, J.3    Zhang, C.L.4
  • 118
    • 0142028043 scopus 로고    scopus 로고
    • Occurrence of Deferribacterales and Entomoplasmatales in the deep-sea Alvinocarid shrimp Rimicaris exoculata gut
    • Zbinden, M. Cambon-Bonavita, M.-A. (2003) Occurrence of Deferribacterales and Entomoplasmatales in the deep-sea Alvinocarid shrimp Rimicaris exoculata gut. FEMS Microbiol Ecol 46 : 23 30.
    • (2003) FEMS Microbiol Ecol , vol.46 , pp. 23-30
    • Zbinden, M.1    Cambon-Bonavita, M.-A.2


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