-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., T. L. Madden, A. A. Schäffer, J. Zhang, Z. Zhang, W. Miller, and D. J. Lipman. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
0016207966
-
An AMP-independent sulphite oxidase from Thiobacillus denitrificans: Purification and properties
-
Aminuddin, M., and D. J. D. Nicholas. 1974. An AMP-independent sulphite oxidase from Thiobacillus denitrificans: purification and properties. J. Gen. Microbiol. 82:103-113.
-
(1974)
J. Gen. Microbiol.
, vol.82
, pp. 103-113
-
-
Aminuddin, M.1
Nicholas, D.J.D.2
-
3
-
-
0038240633
-
Bacterial mercury resistance from atoms to ecosystems
-
Barkay, T., S. M. Miller, and A. O. Summers. 2003. Bacterial mercury resistance from atoms to ecosystems. FEMS Microbiol. Rev. 27:355-384.
-
(2003)
FEMS Microbiol. Rev.
, vol.27
, pp. 355-384
-
-
Barkay, T.1
Miller, S.M.2
Summers, A.O.3
-
4
-
-
0007661810
-
Phénomènes de réduction produits par les microbes (Conférence avec demonstrations faite-Delft, le 16 avril 1903)
-
Beijerinck, M. W. 1904. Phénomènes de réduction produits par les microbes (Conférence avec demonstrations faite-Delft, le 16 avril 1903). Arch. Neerl. Sci. Ser. 29:131-157.
-
(1904)
Arch. Neerl. Sci. Ser.
, vol.29
, pp. 131-157
-
-
Beijerinck, M.W.1
-
5
-
-
17444392874
-
Anaerobic, nitrate-dependent oxidation of U(IV) oxide minerals by the chemolithoautotrophic bacterium Thiobacillus denitrificans
-
Beller, H. R. 2005. Anaerobic, nitrate-dependent oxidation of U(IV) oxide minerals by the chemolithoautotrophic bacterium Thiobacillus denitrificans. Appl. Environ. Microbiol. 71:2170-2174.
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 2170-2174
-
-
Beller, H.R.1
-
6
-
-
2942717244
-
Biogeochemistry and natural attenuation of nitrate in groundwater at an explosives test facility
-
Beller, H. R., V. Madrid, G. B. Hudson, W. W. McNab, and T. Carlsen. 2004. Biogeochemistry and natural attenuation of nitrate in groundwater at an explosives test facility. Appl. Geochem. 19:1483-1494.
-
(2004)
Appl. Geochem.
, vol.19
, pp. 1483-1494
-
-
Beller, H.R.1
Madrid, V.2
Hudson, G.B.3
McNab, W.W.4
Carlsen, T.5
-
7
-
-
3042521098
-
Improved prediction of signal peptides: SignalP 3.0
-
Bendtsen, J. D., H. Nielsen, G. von Heijne, and S. Brunak. 2004. Improved prediction of signal peptides: SignalP 3.0. J. Mol. Biol. 340:783-795.
-
(2004)
J. Mol. Biol.
, vol.340
, pp. 783-795
-
-
Bendtsen, J.D.1
Nielsen, H.2
Von Heijne, G.3
Brunak, S.4
-
8
-
-
0028944291
-
Sequence analysis of subunits of the membrane-bound nitrate reductase from a denitrifying bacterium: The integral membrane subunit provides a prototype for the dihaem electron-carrying arm of a redox loop
-
Berks, B. C., M. D. Page, D. J. Richardson, A. Reilly, A. Cavill, F. Outen, and S. J. Ferguson. 1995. Sequence analysis of subunits of the membrane-bound nitrate reductase from a denitrifying bacterium: the integral membrane subunit provides a prototype for the dihaem electron-carrying arm of a redox loop. Mol. Microbiol. 15:319-331.
-
(1995)
Mol. Microbiol.
, vol.15
, pp. 319-331
-
-
Berks, B.C.1
Page, M.D.2
Richardson, D.J.3
Reilly, A.4
Cavill, A.5
Outen, F.6
Ferguson, S.J.7
-
9
-
-
0002739485
-
Linkage map of Escherichia coli K12
-
edition 9, F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.). ASM Press, Washington, D.C.
-
Berlyn, M. K. B., K. B. Low, K. E. Rudd, and M. Singer. 1996. Linkage map of Escherichia coli K12, edition 9, p. 1715-1902. In F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed., vol. 2. ASM Press, Washington, D.C.
-
(1996)
Escherichia Coli and Salmonella: Cellular and Molecular Biology, 2nd Ed.
, vol.2
, pp. 1715-1902
-
-
Berlyn, M.K.B.1
Low, K.B.2
Rudd, K.E.3
Singer, M.4
-
10
-
-
2642585084
-
Occurrence, structure and function of intracellular polyglucose in the obligate chemolithotroph Thiobacillus neapolitanus
-
Beudeker, R. F., J. W. M. Kerver, and J. G. Kuenen. 1981. Occurrence, structure and function of intracellular polyglucose in the obligate chemolithotroph Thiobacillus neapolitanus. Arch. Microbiol. 129:221-226.
-
(1981)
Arch. Microbiol.
, vol.129
, pp. 221-226
-
-
Beudeker, R.F.1
Kerver, J.W.M.2
Kuenen, J.G.3
-
11
-
-
0019842983
-
Heterolactic fermentation of intracellular polyglucose by the obligate chemolithotroph Thiobacillus neapolitanus under anaerobic conditions
-
Beudeker, R. F., W. de Boer, and J. G. Kuenen. 1981. Heterolactic fermentation of intracellular polyglucose by the obligate chemolithotroph Thiobacillus neapolitanus under anaerobic conditions. FEMS Microbiol. Lett. 12:337-342.
-
(1981)
FEMS Microbiol. Lett.
, vol.12
, pp. 337-342
-
-
Beudeker, R.F.1
De Boer, W.2
Kuenen, J.G.3
-
12
-
-
0014016711
-
Studies on the adenosine-5′-phosphosulfate reductase from Thiobacillus denitrificans
-
Bowen, T. J., F. C. Happold, and B. F. Taylor. 1966. Studies on the adenosine-5′-phosphosulfate reductase from Thiobacillus denitrificans. Biochim. Biophys. Acta 118:566-576.
-
(1966)
Biochim. Biophys. Acta
, vol.118
, pp. 566-576
-
-
Bowen, T.J.1
Happold, F.C.2
Taylor, B.F.3
-
13
-
-
0040786729
-
"ADP sulfurylase" from Thiobacillus denitrificans is an adenylylsulfate:phosphate adenylyltransferase and belongs to a new family of nucleotidyltransferases
-
Brüser, T., T. Selmer, and C. Dahl. 2000. "ADP sulfurylase" from Thiobacillus denitrificans is an adenylylsulfate: phosphate adenylyltransferase and belongs to a new family of nucleotidyltransferases. J. Biol. Chem. 275:1691-1698.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 1691-1698
-
-
Brüser, T.1
Selmer, T.2
Dahl, C.3
-
14
-
-
0038531082
-
Organization of carboxysome genes in the thiobacilli
-
Cannon, G. C., S. H. Baker, F. Soyer, D. R. Johnson, C. E. Bradburne, J. L. Mehlman, P. S. Davies, Q. L. Jiang, S. Heinhorst, and J. M. Shively. 2003. Organization of carboxysome genes in the thiobacilli. Curr. Microbiol. 46:115-119.
-
(2003)
Curr. Microbiol.
, vol.46
, pp. 115-119
-
-
Cannon, G.C.1
Baker, S.H.2
Soyer, F.3
Johnson, D.R.4
Bradburne, C.E.5
Mehlman, J.L.6
Davies, P.S.7
Jiang, Q.L.8
Heinhorst, S.9
Shively, J.M.10
-
15
-
-
0037408431
-
Complete genome sequence of the ammonia-oxidizing bacterium and obligate chemolithoautotroph Nitrosomonas europaea
-
Chain, P., J. Lamerdin, F. Larimer, W. Regala, V. Lao, M. Land, L. Hauser, A. Hooper, M. Klotz, J. Norton, L. Sayavedra-Soto, D. Arciero, N. Hommes, M. Whittaker, and D. Arp. 2003. Complete genome sequence of the ammonia-oxidizing bacterium and obligate chemolithoautotroph Nitrosomonas europaea. J. Bacteriol. 185:2759-2773.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 2759-2773
-
-
Chain, P.1
Lamerdin, J.2
Larimer, F.3
Regala, W.4
Lao, V.5
Land, M.6
Hauser, L.7
Hooper, A.8
Klotz, M.9
Norton, J.10
Sayavedra-Soto, L.11
Arciero, D.12
Hommes, N.13
Whittaker, M.14
Arp, D.15
-
16
-
-
0344117773
-
Genes involved in hydrogen and sulfur metabolism in phototrophic sulfur bacteria
-
Dahl, C., G. Rakhely, A. S. Pott-Sperling, B. Fodor, M. Takacs, A. Toth, M. Kraeling, K. Gyorfi, A. Kovacs, J. Tusz, and K. L. Kovacs. 1999. Genes involved in hydrogen and sulfur metabolism in phototrophic sulfur bacteria. FEMS Microbiol. Lett. 180:317-324.
-
(1999)
FEMS Microbiol. Lett.
, vol.180
, pp. 317-324
-
-
Dahl, C.1
Rakhely, G.2
Pott-Sperling, A.S.3
Fodor, B.4
Takacs, M.5
Toth, A.6
Kraeling, M.7
Gyorfi, K.8
Kovacs, A.9
Tusz, J.10
Kovacs, K.L.11
-
17
-
-
14544272337
-
Novel genes of the dsr gene cluster and evidence for close interaction of Dsr proteins during sulfur oxidation in the phototrophic sulfur bacterium Allochromatium vinosum
-
Dahl, C., S. Engels, A. S. Pott-Sperling, A. Schulte, J. Sander, Y. Lübbe, O. Deuster, and D. C. Brune. 2005. Novel genes of the dsr gene cluster and evidence for close interaction of Dsr proteins during sulfur oxidation in the phototrophic sulfur bacterium Allochromatium vinosum. J. Bacteriol. 187:1392-1404.
-
(2005)
J. Bacteriol.
, vol.187
, pp. 1392-1404
-
-
Dahl, C.1
Engels, S.2
Pott-Sperling, A.S.3
Schulte, A.4
Sander, J.5
Lübbe, Y.6
Deuster, O.7
Brune, D.C.8
-
18
-
-
0035014565
-
The ABC of ABCs: A phylogenetic and functional classification of ABC systems in living organisms
-
Dassa, E., and P. Bouige. 2001. The ABC of ABCs: a phylogenetic and functional classification of ABC systems in living organisms. Res. Microbiol. 152:211-229.
-
(2001)
Res. Microbiol.
, vol.152
, pp. 211-229
-
-
Dassa, E.1
Bouige, P.2
-
19
-
-
0015596223
-
Assimilation and toxicity of some exogenous C-1 compounds, alcohols, sugars and acetate in the methane-oxidizing bacterium Methylococcus capsulatus
-
Eccleston, M., and D. P. Kelly. 1973. Assimilation and toxicity of some exogenous C-1 compounds, alcohols, sugars and acetate in the methane-oxidizing bacterium Methylococcus capsulatus. J. Gen. Microbiol. 75:211-221.
-
(1973)
J. Gen. Microbiol.
, vol.75
, pp. 211-221
-
-
Eccleston, M.1
Kelly, D.P.2
-
20
-
-
0037047102
-
The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium
-
Eisen, J. A., K. E. Nelson, I. T. Paulsen, J. F. Heidelberg, M. Wu, R. J. Dodson, R. Deboy, M. L. Gwinn, W. C. Nelson, D. H. Haft, E. K. Hickey, J. D. Peterson, A. S. Durkin, J. L. Kolonay, F. Yang, I. Holt, L. A. Umayam, T. Mason, M. Brenner, T. P. Shea, D. Parksey, W. C. Nierman, T. V. Feldblyum, C. L. Hansen, M. B. Craven, D. Radune, J. Vamathevan, H. Khouri, O. White, T. M. Gruber, K. A. Ketchum, J. C. Venter, H. Tettelin, D. A. Bryant, and C. M. Fraser. 2002. The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium. Proc. Natl. Acad. Sci. USA 99:9509-9514.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 9509-9514
-
-
Eisen, J.A.1
Nelson, K.E.2
Paulsen, I.T.3
Heidelberg, J.F.4
Wu, M.5
Dodson, R.J.6
Deboy, R.7
Gwinn, M.L.8
Nelson, W.C.9
Haft, D.H.10
Hickey, E.K.11
Peterson, J.D.12
Durkin, A.S.13
Kolonay, J.L.14
Yang, F.15
Holt, I.16
Umayam, L.A.17
Mason, T.18
Brenner, M.19
Shea, T.P.20
Parksey, D.21
Nierman, W.C.22
Feldblyum, T.V.23
Hansen, C.L.24
Craven, M.B.25
Radune, D.26
Vamathevan, J.27
Khouri, H.28
White, O.29
Gruber, T.M.30
Ketchum, K.A.31
Venter, J.C.32
Tettelin, H.33
Bryant, D.A.34
Fraser, C.M.35
more..
-
21
-
-
0026652711
-
Two forms of ribulose 1,5-bisphosphate carboxylase/oxygenase from Thiobacillus denitrificans
-
English, R. S., C. A. Williams, S. C. Lorbach, and J. M. Shively. 1992. Two forms of ribulose 1,5-bisphosphate carboxylase/oxygenase from Thiobacillus denitrificans. FEMS Microbiol. Lett. 73:111-119.
-
(1992)
FEMS Microbiol. Lett.
, vol.73
, pp. 111-119
-
-
English, R.S.1
Williams, C.A.2
Lorbach, S.C.3
Shively, J.M.4
-
22
-
-
0031978181
-
Basecalling of automated sequencer traces using phred. II. Error probabilities
-
Ewing, B., and P. Green. 1998. Basecalling of automated sequencer traces using phred. II. Error probabilities. Genome Res. 8:186-194.
-
(1998)
Genome Res.
, vol.8
, pp. 186-194
-
-
Ewing, B.1
Green, P.2
-
23
-
-
0031955518
-
Basecalling of automated sequencer traces using phred. I. Accuracy assessment
-
Ewing, B., L. Hillier, M. Wendl, and P. Green. 1998. Basecalling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res. 8:175-185.
-
(1998)
Genome Res.
, vol.8
, pp. 175-185
-
-
Ewing, B.1
Hillier, L.2
Wendl, M.3
Green, P.4
-
24
-
-
0000122573
-
PHYLIP-Phytogeny Inference Package (version 3.2)
-
Felsenstein, J. 1989. PHYLIP-Phytogeny Inference Package (version 3.2). Cladistics 5:164-166.
-
(1989)
Cladistics
, vol.5
, pp. 164-166
-
-
Felsenstein, J.1
-
26
-
-
0037701544
-
Molecular analysis of the copper-transporting efflux system CusCFBA of Escherichia coli
-
Franke, S., G. Grass, C. Rensing, and D. H. Nies. 2003. Molecular analysis of the copper-transporting efflux system CusCFBA of Escherichia coli. J. Bacteriol. 185:3804-3812.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 3804-3812
-
-
Franke, S.1
Grass, G.2
Rensing, C.3
Nies, D.H.4
-
27
-
-
0033870152
-
Novel genes coding for lithotrophic sulfur oxidation of Paracoccus pantotrophus GB17
-
Friedrich, C. G., A. Quentmeier, F. Bardichewsky, D. Rother, R. Kraft, S. Kostka, and H. Prinz. 2000. Novel genes coding for lithotrophic sulfur oxidation of Paracoccus pantotrophus GB17. J. Bacteriol. 182:4677-4687.
-
(2000)
J. Bacteriol.
, vol.182
, pp. 4677-4687
-
-
Friedrich, C.G.1
Quentmeier, A.2
Bardichewsky, F.3
Rother, D.4
Kraft, R.5
Kostka, S.6
Prinz, H.7
-
28
-
-
0035408581
-
Oxidation of reduced inorganic sulfur compounds by bacteria: Emergence of a common mechanism?
-
Friedrich, C. G., D. Rother, F. Bardichewsky, A. Quentmeier, and J. Fischer. 2001. Oxidation of reduced inorganic sulfur compounds by bacteria: emergence of a common mechanism? Appl. Environ. Microbiol. 67:2873-2882.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 2873-2882
-
-
Friedrich, C.G.1
Rother, D.2
Bardichewsky, F.3
Quentmeier, A.4
Fischer, J.5
-
29
-
-
0343618612
-
Adenylylsulfate reductases from archaea and bacteria are 1:1 αβ-heterodimeric iron-sulfur flavoenzymes-high similarity of molecular properties emphasizes their central role in sulfur metabolism
-
Fritz, G., T. Büchert, H. Huber, K. O. Stetter, and P. M. H. Kroneck. 2000. Adenylylsulfate reductases from archaea and bacteria are 1:1 αβ-heterodimeric iron-sulfur flavoenzymes-high similarity of molecular properties emphasizes their central role in sulfur metabolism. FEBS Lett. 473:63-66.
-
(2000)
FEBS Lett.
, vol.473
, pp. 63-66
-
-
Fritz, G.1
Büchert, T.2
Huber, H.3
Stetter, K.O.4
Kroneck, P.M.H.5
-
30
-
-
12144278799
-
Biochemical characterization of phosphoryl transfer involving HPr of the phosphoenolpyruvate-dependent phosphotransferase system in Treponema denticola, an organism that lacks PTS permeases
-
Gonzalez, C. F., A. J. Stonestrom, G. L. Lorca, and M. H. Saier. 2005. Biochemical characterization of phosphoryl transfer involving HPr of the phosphoenolpyruvate-dependent phosphotransferase system in Treponema denticola, an organism that lacks PTS permeases. Biochemistry 44:598-608.
-
(2005)
Biochemistry
, vol.44
, pp. 598-608
-
-
Gonzalez, C.F.1
Stonestrom, A.J.2
Lorca, G.L.3
Saier, M.H.4
-
31
-
-
0031955116
-
Consed: A graphical tool for sequence finishing
-
Gordon, D., C. Abajian, and P. Green. 1998. Consed: a graphical tool for sequence finishing. Genome Res. 8:195-202.
-
(1998)
Genome Res.
, vol.8
, pp. 195-202
-
-
Gordon, D.1
Abajian, C.2
Green, P.3
-
32
-
-
0034817086
-
CueO is a multi-copper oxidase that confers copper tolerance in Escherichia coli
-
Grass, G., and C. Rensing. 2001. CueO is a multi-copper oxidase that confers copper tolerance in Escherichia coli. Biochem. Biophys. Res. Commun. 286:902-908.
-
(2001)
Biochem. Biophys. Res. Commun.
, vol.286
, pp. 902-908
-
-
Grass, G.1
Rensing, C.2
-
33
-
-
0031577711
-
The novel genes, cbbQ and cbbO, located downstream from the RubisCO genes of Pseudomonas hydrogenothermophila, affect the conformational states and activity of RubisCO
-
Hayashi, N. R., H. Arai, T. Kodama, and Y. Igarashi. 1997. The novel genes, cbbQ and cbbO, located downstream from the RubisCO genes of Pseudomonas hydrogenothermophila, affect the conformational states and activity of RubisCO. Biochem. Biophys. Res. Commun. 241:565-569.
-
(1997)
Biochem. Biophys. Res. Commun.
, vol.241
, pp. 565-569
-
-
Hayashi, N.R.1
Arai, H.2
Kodama, T.3
Igarashi, Y.4
-
34
-
-
0036842611
-
Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis
-
Heidelberg, J. F., I. T. Paulsen, K. E. Nelson, E. J. Gaidos, W. C. Nelson, T. D. Read, J. A. Eisen, R. Seshadri, N. Ward, B. Methe, R. A. Clayton, T. Meyer, A. Tsapin, J. Scott, M. Beanan, L. Brinkac, S. Daugherty, R. T. DeBoy, R. J. Dodson, A. S. Durkin, D. H. Haft, J. F. Kolonay, R. Madupu, J. D. Peterson, L. A. Umayam, O. White, A. M. Wolf, J. Vamathevan, J. Weidman, M. Impraim, K. Lee, K. Berry, C. Lee, J. Mueller, H. Khouri, J. Gill, T. R. Utterback, L. A. McDonald, T. V. Feldblyum, H. O. Smith, J. C. Venter, K. H. Nealson, and C. M. Fraser. 2002. Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis. Nat. Biotechnol. 20:1118-1123.
-
(2002)
Nat. Biotechnol.
, vol.20
, pp. 1118-1123
-
-
Heidelberg, J.F.1
Paulsen, I.T.2
Nelson, K.E.3
Gaidos, E.J.4
Nelson, W.C.5
Read, T.D.6
Eisen, J.A.7
Seshadri, R.8
Ward, N.9
Methe, B.10
Clayton, R.A.11
Meyer, T.12
Tsapin, A.13
Scott, J.14
Beanan, M.15
Brinkac, L.16
Daugherty, S.17
Deboy, R.T.18
Dodson, R.J.19
Durkin, A.S.20
Haft, D.H.21
Kolonay, J.F.22
Madupu, R.23
Peterson, J.D.24
Umayam, L.A.25
White, O.26
Wolf, A.M.27
Vamathevan, J.28
Weidman, J.29
Impraim, M.30
Lee, K.31
Berry, K.32
Lee, C.33
Mueller, J.34
Khouri, H.35
Gill, J.36
Utterback, T.R.37
McDonald, L.A.38
Feldblyum, T.V.39
Smith, H.O.40
Venter, J.C.41
Nealson, K.H.42
Fraser, C.M.43
more..
-
35
-
-
0030033929
-
Deduced amino acid sequence, functional expression, and unique enzymatic properties of the form I and form II ribulose bisphosphate carboxylase/oxygenase from the chemoautotrophic bacterium Thiobacillus denitrificans
-
Hernandez, J. M., S. H. Baker, S. C. Lorbach, J. M. Shively, and F. R. Tabita. 1996. Deduced amino acid sequence, functional expression, and unique enzymatic properties of the form I and form II ribulose bisphosphate carboxylase/oxygenase from the chemoautotrophic bacterium Thiobacillus denitrificans. J. Bacteriol. 178:347-356.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 347-356
-
-
Hernandez, J.M.1
Baker, S.H.2
Lorbach, S.C.3
Shively, J.M.4
Tabita, F.R.5
-
37
-
-
0344393479
-
Chemolithoorganotrophic growth of Nitrosomonas europaea on fructose
-
Hommes, N. G., L. A. Sayavedra-Soto, and D. J. Arp. 2003. Chemolithoorganotrophic growth of Nitrosomonas europaea on fructose. J. Bacteriol. 185:6809-6814.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 6809-6814
-
-
Hommes, N.G.1
Sayavedra-Soto, L.A.2
Arp, D.J.3
-
38
-
-
0031757669
-
Multiple sequence alignment with Clustal X
-
Jeanmongin, F., J. D. Thompson, M. Gony, D. G. Higgins, and T. J. Gibson. 1998. Multiple sequence alignment with Clustal X. Trends Biochem. Sci. 23:403-405.
-
(1998)
Trends Biochem. Sci.
, vol.23
, pp. 403-405
-
-
Jeanmongin, F.1
Thompson, J.D.2
Gony, M.3
Higgins, D.G.4
Gibson, T.J.5
-
39
-
-
0035093274
-
Evidence for two pathways of thiosulfate oxidation in Starkeya novella (formerly Thiobacillus novellas)
-
Kappler, U., C. G. Friedrich, H. G. Trüper, and C. Dabl. 2001. Evidence for two pathways of thiosulfate oxidation in Starkeya novella (formerly Thiobacillus novellas). Arch. Microbiol. 175:102-111.
-
(2001)
Arch. Microbiol.
, vol.175
, pp. 102-111
-
-
Kappler, U.1
Friedrich, C.G.2
Trüper, H.G.3
Dabl, C.4
-
40
-
-
1842332701
-
Compositional biases of bacterial genomes and evolutionary implications
-
Karlin, S., J. Mrazek, and A. M. Campbell. 1997. Compositional biases of bacterial genomes and evolutionary implications. J. Bacteriol. 179:3899-3913.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 3899-3913
-
-
Karlin, S.1
Mrazek, J.2
Campbell, A.M.3
-
41
-
-
0014164828
-
The incorporation of acetate by the chemoautotroph Thiobacillus neapolitanus strain C
-
Kelly, D. P. 1967. The incorporation of acetate by the chemoautotroph Thiobacillus neapolitanus strain C. Arch. Mikrobiol. 58:99-116.
-
(1967)
Arch. Mikrobiol.
, vol.58
, pp. 99-116
-
-
Kelly, D.P.1
-
42
-
-
0020481782
-
Biochemistry of the chemolithotrophic oxidation of inorganic sulphur
-
Kelly, D. P. 1982. Biochemistry of the chemolithotrophic oxidation of inorganic sulphur. Philos. Trans. R. Soc. Lond. B Biol. Sci. 298:499-528.
-
(1982)
Philos. Trans. R. Soc. Lond. B Biol. Sci.
, vol.298
, pp. 499-528
-
-
Kelly, D.P.1
-
43
-
-
0000897154
-
Physiology and biochemistry of unicellular sulfur bacteria
-
H. G. Schlegel and B. Bowien (ed.). Science Tech Publishers, Madison, Wis.
-
Kelly, D. P. 1989. Physiology and biochemistry of unicellular sulfur bacteria, p. 193-217. In H. G. Schlegel and B. Bowien (ed.), Biology of autotrophic bacteria. Science Tech Publishers, Madison, Wis.
-
(1989)
Biology of Autotrophic Bacteria
, pp. 193-217
-
-
Kelly, D.P.1
-
44
-
-
0041198806
-
Energetics of chemolithotrophic bacteria
-
T. A. Krulwich (ed.). Academic Press, San Diego, Calif.
-
Kelly, D. P. 1990. Energetics of chemolithotrophic bacteria, p. 479-503. In T. A. Krulwich (ed.), Bacterial energetics, Academic Press, San Diego, Calif.
-
(1990)
Bacterial Energetics
, pp. 479-503
-
-
Kelly, D.P.1
-
45
-
-
0032940452
-
Thermodynamic aspects of energy conservation by chemolithotrophic sulfur bacteria in relation to the sulfur oxidation pathways
-
Kelly, D. P. 1999. Thermodynamic aspects of energy conservation by chemolithotrophic sulfur bacteria in relation to the sulfur oxidation pathways. Arch. Microbiol. 171:219-229.
-
(1999)
Arch. Microbiol.
, vol.171
, pp. 219-229
-
-
Kelly, D.P.1
-
46
-
-
0000650063
-
Genus Thiobacillus
-
J. T. Staley, M. P. Bryant, N. Pfennig, and J. G. Holt (ed.). Williams & Wilkins, Baltimore, Md.
-
Kelly, D. P., and A. P. Harrison. 1989. Genus Thiobacillus, p. 1842-1858. In J. T. Staley, M. P. Bryant, N. Pfennig, and J. G. Holt (ed.), Bergey's manual of systematic bacteriology, 1st ed., vol. 3. Williams & Wilkins, Baltimore, Md.
-
(1989)
Bergey's Manual of Systematic Bacteriology, 1st Ed.
, vol.3
, pp. 1842-1858
-
-
Kelly, D.P.1
Harrison, A.P.2
-
47
-
-
0034108430
-
Confirmation of Thiobacillus denitrificans as a species of the genus Thiobacillus, in the beta-subclass of the Proteobacteria, with strain NCIMB 9548 as the type strain
-
Kelly, D. P., and A. P. Wood. 2000. Confirmation of Thiobacillus denitrificans as a species of the genus Thiobacillus, in the beta-subclass of the Proteobacteria, with strain NCIMB 9548 as the type strain. Int. J. Syst. Evol. Microbiol. 50:547-550.
-
(2000)
Int. J. Syst. Evol. Microbiol.
, vol.50
, pp. 547-550
-
-
Kelly, D.P.1
Wood, A.P.2
-
48
-
-
2642517373
-
The chemolithotrophic prokaryotes
-
M. Dworkin, S. Falkow, E. Rosenberg, K.-H. Schleifer, and E. Stackebrandt (ed.). Springer-Verlag, New York, N.Y. [Online]
-
Kelly, D. P., and A. P. Wood. 2000. The chemolithotrophic prokaryotes. In M. Dworkin, S. Falkow, E. Rosenberg, K.-H. Schleifer, and E. Stackebrandt (ed.), The prokaryotes, an evolving electronic resource for the microbiological community (PKIIIE). Springer-Verlag, New York, N.Y. [Online.] http: //www.prokaryotes.com.
-
(2000)
The Prokaryotes, An Evolving Electronic Resource for the Microbiological Community (PKIIIE)
-
-
Kelly, D.P.1
Wood, A.P.2
-
49
-
-
32444441814
-
Genus II. Thiobacillus Beijerinck
-
G. M. Garrity (eds.). Springer, New York, N.Y.
-
Kelly, D. P., A. P. Wood, and E. Stackebrandt. 2005. Genus II. Thiobacillus Beijerinck, p. 764-769. In G. M. Garrity (eds.), Bergey's manual of systematic bacteriology, 2nd ed., vol. 2, part C. Springer, New York, N.Y.
-
(2005)
Bergey's Manual of Systematic Bacteriology, 2nd Ed.
, vol.2
, Issue.PART C
, pp. 764-769
-
-
Kelly, D.P.1
Wood, A.P.2
Stackebrandt, E.3
-
50
-
-
0031032795
-
Oxidative metabolism of inorganic sulfur compounds by bacteria
-
Kelly, D. P., J. K. Shergill, W. P. Lu, and A. P. Wood. 1997. Oxidative metabolism of inorganic sulfur compounds by bacteria. Antonie Leeuwenhoek 71:95-107.
-
(1997)
Antonie Leeuwenhoek
, vol.71
, pp. 95-107
-
-
Kelly, D.P.1
Shergill, J.K.2
Lu, W.P.3
Wood, A.P.4
-
51
-
-
0035883519
-
Behavior of restriction-modification systems as selfish mobile elements and their impact on genome evolution
-
Kobayashi, I. 2001. Behavior of restriction-modification systems as selfish mobile elements and their impact on genome evolution. Nucleic Acids Res. 29:3742-3756.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 3742-3756
-
-
Kobayashi, I.1
-
52
-
-
0035910270
-
Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
-
Krogh, A., B. Larsson, G. von Heijne, and E. L. L. Sonnhammer. 2001. Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes. J. Mol. Biol. 305:567-580.
-
(2001)
J. Mol. Biol.
, vol.305
, pp. 567-580
-
-
Krogh, A.1
Larsson, B.2
Von Heijne, G.3
Sonnhammer, E.L.L.4
-
53
-
-
0141814895
-
Membrane-bound hydrogenase and sulfur reductase of the hyperthermophilic and acidophilic archaeon Acidianus ambivalens
-
Laska, S., F. Lottspeich, and A. Kletzin. 2003. Membrane-bound hydrogenase and sulfur reductase of the hyperthermophilic and acidophilic archaeon Acidianus ambivalens. Microbiology 149:2357-2371.
-
(2003)
Microbiology
, vol.149
, pp. 2357-2371
-
-
Laska, S.1
Lottspeich, F.2
Kletzin, A.3
-
54
-
-
0346243803
-
Genome of Geobacter sulfurreducens: Metal reduction in subsurface environments
-
Methé, B. A., K. E. Nelson, J. A. Eisen, I. T. Paulsen, W. Nelson, J. F. Heidelberg, D. Wu, M. Wu, N. Ward, M. J. Beanan, R. J. Dodson, R. Madupu, L. M. Brinkac, S. C. Daugherty, R. T. DeBoy, A. S. Durkin, M. Gwinn, J. F. Kolonay, S. A. Sullivan, D. H. Haft, J. Selengut, T. M. Davidsen, N. Zafar, O. White, B. Tran, C. Romero, H. A. Forberger, J. Weidman, H. Khouri, T. V. Feldblyum, T. R. Utterback, S. E. Van Aken, D. R. Lovley, and C. M. Fraser. 2003. Genome of Geobacter sulfurreducens: metal reduction in subsurface environments. Science 302:1967-1969.
-
(2003)
Science
, vol.302
, pp. 1967-1969
-
-
Methé, B.A.1
Nelson, K.E.2
Eisen, J.A.3
Paulsen, I.T.4
Nelson, W.5
Heidelberg, J.F.6
Wu, D.7
Wu, M.8
Ward, N.9
Beanan, M.J.10
Dodson, R.J.11
Madupu, R.12
Brinkac, L.M.13
Daugherty, S.C.14
Deboy, R.T.15
Durkin, A.S.16
Gwinn, M.17
Kolonay, J.F.18
Sullivan, S.A.19
Haft, D.H.20
Selengut, J.21
Davidsen, T.M.22
Zafar, N.23
White, O.24
Tran, B.25
Romero, C.26
Forberger, H.A.27
Weidman, J.28
Khouri, H.29
Feldblyum, T.V.30
Utterback, T.R.31
Van Aken, S.E.32
Lovley, D.R.33
Fraser, C.M.34
more..
-
55
-
-
0037565061
-
Efflux-mediated heavy metal resistance in prokaryotes
-
Nies, D. H. 2003. Efflux-mediated heavy metal resistance in prokaryotes. FEMS Microbiol. Rev. 27:313-339.
-
(2003)
FEMS Microbiol. Rev.
, vol.27
, pp. 313-339
-
-
Nies, D.H.1
-
56
-
-
0031659680
-
Field tracer test for denitrification in a pyrite-bearing schist aquifer
-
Pauwels, H., W. Kloppmann, J.-C. Foucher, A. Martelat, and V. Fritsche. 1998. Field tracer test for denitrification in a pyrite-bearing schist aquifer. Appl. Geochem. 13:767-778.
-
(1998)
Appl. Geochem.
, vol.13
, pp. 767-778
-
-
Pauwels, H.1
Kloppmann, W.2
Foucher, J.-C.3
Martelat, A.4
Fritsche, V.5
-
57
-
-
0014879992
-
The tricarboxylic acid cycle in Thiobacillus denitrificans and Thiobacillus-A2
-
Peeters, T. L., M. S. Liu, and M. I. H. Aleem. 1970. The tricarboxylic acid cycle in Thiobacillus denitrificans and Thiobacillus-A2. J. Gen. Microbiol. 64:29-35.
-
(1970)
J. Gen. Microbiol.
, vol.64
, pp. 29-35
-
-
Peeters, T.L.1
Liu, M.S.2
Aleem, M.I.H.3
-
58
-
-
1942504686
-
Proton pathways, ligand binding and dynamics of the catalytic site in haem-copper oxygen reductases: A comparison between the three families
-
Pereira, M. M., and M. Teixeira. 2004. Proton pathways, ligand binding and dynamics of the catalytic site in haem-copper oxygen reductases: a comparison between the three families. Biochim. Biophys. Acta 1655:340-346.
-
(2004)
Biochim. Biophys. Acta
, vol.1655
, pp. 340-346
-
-
Pereira, M.M.1
Teixeira, M.2
-
59
-
-
0035853451
-
Phytogeny and distribution of the soxB gene among thiosulfate-oxidizing bacteria
-
Petri, R., L. Podgorsek, and J. F. Imhoff. 2001. Phytogeny and distribution of the soxB gene among thiosulfate-oxidizing bacteria. FEMS Microbiol. Lett. 197:171-178.
-
(2001)
FEMS Microbiol. Lett.
, vol.197
, pp. 171-178
-
-
Petri, R.1
Podgorsek, L.2
Imhoff, J.F.3
-
60
-
-
0037184270
-
Denitrifying genes in bacterial and Archaeal genomes
-
Philippot, L. 2002. Denitrifying genes in bacterial and Archaeal genomes. Biochim. Biophys. Acta 1577:355-376.
-
(2002)
Biochim. Biophys. Acta
, vol.1577
, pp. 355-376
-
-
Philippot, L.1
-
62
-
-
0031855745
-
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur
-
Pott, A. S., and C. Dahl. 1998. Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur. Microbiology (Reading) 144:1881-1894.
-
(1998)
Microbiology (Reading)
, vol.144
, pp. 1881-1894
-
-
Pott, A.S.1
Dahl, C.2
-
63
-
-
0344495378
-
Sulfur oxidation in Paracoccus pantotrophus: Interaction of the sulfur-binding protein SoxYZ with the dimanganese SoxB protein
-
Quentmeier, A., P. Hellwig, F. Bardichewsky, G. Grolle, R. Kraft, and C. G. Friedrich. 2003. Sulfur oxidation in Paracoccus pantotrophus: interaction of the sulfur-binding protein SoxYZ with the dimanganese SoxB protein. Biochem. Biophys. Res. Commun. 312:1011-1018.
-
(2003)
Biochem. Biophys. Res. Commun.
, vol.312
, pp. 1011-1018
-
-
Quentmeier, A.1
Hellwig, P.2
Bardichewsky, F.3
Grolle, G.4
Kraft, R.5
Friedrich, C.G.6
-
64
-
-
8744255663
-
Sulfide dehydrogenase activity of the monomeric flavoprotein SoxF of Paracoccus pantotrophus
-
Quentmeier, A., P. Hellwig, F. Bardichewsky, R. Wichmann, and C. G. Friedrich. 2004. Sulfide dehydrogenase activity of the monomeric flavoprotein SoxF of Paracoccus pantotrophus. Biochemistry 43:14696-14703.
-
(2004)
Biochemistry
, vol.43
, pp. 14696-14703
-
-
Quentmeier, A.1
Hellwig, P.2
Bardichewsky, F.3
Wichmann, R.4
Friedrich, C.G.5
-
65
-
-
0033976381
-
Characterization of a new type of sulfite dehydrogenase from Paracoccus pantotrophus GB17
-
Quentmeier, A., R. Kraft, S. Kostka, R. Klockemkaper, and C. G. Friedrich. 2000. Characterization of a new type of sulfite dehydrogenase from Paracoccus pantotrophus GB17. Arch. Microbiol. 173:117-125.
-
(2000)
Arch. Microbiol.
, vol.173
, pp. 117-125
-
-
Quentmeier, A.1
Kraft, R.2
Kostka, S.3
Klockemkaper, R.4
Friedrich, C.G.5
-
66
-
-
0031894326
-
Unusual organization of the genes coding for HydSL, the stable [NiFe]hydrogenase in the photosynthetic bacterium Thiocapsa roseopersicina BBS
-
Rakhely, G., A. Colbeau, J. Garin, P. M. Vignais, and K. L. Kovacs. 1998. Unusual organization of the genes coding for HydSL, the stable [NiFe]hydrogenase in the photosynthetic bacterium Thiocapsa roseopersicina BBS. J. Bacteriol. 180:1460-1465.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 1460-1465
-
-
Rakhely, G.1
Colbeau, A.2
Garin, J.3
Vignais, P.M.4
Kovacs, K.L.5
-
67
-
-
0037194438
-
The cytochrome complex SoxXA of Paracoccus pantotrophus is produced in Escherichia coli and functional in the reconstituted sulfur-oxidizing enzyme system
-
Rother, D., and C. G. Friedrich. 2002. The cytochrome complex SoxXA of Paracoccus pantotrophus is produced in Escherichia coli and functional in the reconstituted sulfur-oxidizing enzyme system. Biochim. Biophys. Acta 1598:65-73.
-
(2002)
Biochim. Biophys. Acta
, vol.1598
, pp. 65-73
-
-
Rother, D.1
Friedrich, C.G.2
-
68
-
-
0034932333
-
Novel genes of the sox gene cluster, mutagenesis of the flavoprotein SoxF, and evidence for a general sulfur-oxidizing system in Paracoccus pantotrophus GB17
-
Rother, D., H. J. Henrich, A. Quentmeier, F. Bardichewsky, and C. G. Friedrich. 2001. Novel genes of the sox gene cluster, mutagenesis of the flavoprotein SoxF, and evidence for a general sulfur-oxidizing system in Paracoccus pantotrophus GB17. J. Bacteriol. 183:4499-4508.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 4499-4508
-
-
Rother, D.1
Henrich, H.J.2
Quentmeier, A.3
Bardichewsky, F.4
Friedrich, C.G.5
-
69
-
-
0017388181
-
Sulphite-dependent nitrate reductase and NADH-dependent nitrate reductase from Thiobacillus denitrificans
-
Sawnhey, V., and D. J. D. Nicholas. 1977. Sulphite-dependent nitrate reductase and NADH-dependent nitrate reductase from Thiobacillus denitrificans. J. Gen. Microbiol. 100:49-58.
-
(1977)
J. Gen. Microbiol.
, vol.100
, pp. 49-58
-
-
Sawnhey, V.1
Nicholas, D.J.D.2
-
70
-
-
0017814120
-
Sulphide-linked nitrite reductase from Thiobacillus denitrificans with cytochrome oxidase activity: Purification and properties
-
Sawnhey, V., and D. J. D. Nicholas. 1978. Sulphide-linked nitrite reductase from Thiobacillus denitrificans with cytochrome oxidase activity: purification and properties. J. Gen. Microbiol. 106:119-128.
-
(1978)
J. Gen. Microbiol.
, vol.106
, pp. 119-128
-
-
Sawnhey, V.1
Nicholas, D.J.D.2
-
71
-
-
0018429082
-
Purification of Thiobacillus-denitrificans siroheme sulfite reductase and investigation of some molecular and catalytic properties
-
Schedel, M., and H. G. Trüper. 1979. Purification of Thiobacillus-denitrificans siroheme sulfite reductase and investigation of some molecular and catalytic properties. Biochim. Biophys. Acta 568:454-466.
-
(1979)
Biochim. Biophys. Acta
, vol.568
, pp. 454-466
-
-
Schedel, M.1
Trüper, H.G.2
-
73
-
-
0017395208
-
Specialist phototrophs, lithotrophs, and methylotrophs: A unity among a diversity of prokaryotes?
-
Smith, A. J., and D. S. Hoare. 1977. Specialist phototrophs, lithotrophs, and methylotrophs: a unity among a diversity of prokaryotes? Bacteriol. Rev. 41:419-448.
-
(1977)
Bacteriol. Rev.
, vol.41
, pp. 419-448
-
-
Smith, A.J.1
Hoare, D.S.2
-
74
-
-
1642500161
-
A novel evolutionary lineage of carbonic anhydrase (ε class) is a component of the carboxysome shell
-
So, A. K.-C., G. S. Espie, E. B. Williams, J. M. Shively, S. Heinhorst, and G. C. Cannon. 2004. A novel evolutionary lineage of carbonic anhydrase (ε class) is a component of the carboxysome shell. J. Bacteriol. 186:623-630.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 623-630
-
-
So, A.K.-C.1
Espie, G.S.2
Williams, E.B.3
Shively, J.M.4
Heinhorst, S.5
Cannon, G.C.6
-
75
-
-
0031614678
-
A hidden Markov model for predicting transmembrane helices in protein sequences
-
J. Glasgow, T. Littlejohn, F. Major, R. Lathrop, D. Sankoff, and C. Sensen (ed.). AAAI Press, Menlo Park, CA
-
Sonnhammer, E. L. L., G. von Heijne, and A. Krogh. 1998. A hidden Markov model for predicting transmembrane helices in protein sequences, p. 175-182. In J. Glasgow, T. Littlejohn, F. Major, R. Lathrop, D. Sankoff, and C. Sensen (ed.), Proceedings of the Sixth International Conference on Intelligent Systems for Molecular Biology. AAAI Press, Menlo Park, CA.
-
(1998)
Proceedings of the Sixth International Conference on Intelligent Systems for Molecular Biology
, pp. 175-182
-
-
Sonnhammer, E.L.L.1
Von Heijne, G.2
Krogh, A.3
-
76
-
-
4344621662
-
Anaerobic growth of the haloalkaliphilic denitrifying sulfur-oxidizing bacterium Thialkalivibrio thiocyanodenitrificans sp. nov. with thiocyanate
-
Sorokin, D. Y., T. P. Tourova, A. N. Antipov, G. Muyzer, and J. G. Kuenen. 2004. Anaerobic growth of the haloalkaliphilic denitrifying sulfur-oxidizing bacterium Thialkalivibrio thiocyanodenitrificans sp. nov. with thiocyanate. Microbiology (Reading) 150:2435-2442.
-
(2004)
Microbiology (Reading)
, vol.150
, pp. 2435-2442
-
-
Sorokin, D.Y.1
Tourova, T.P.2
Antipov, A.N.3
Muyzer, G.4
Kuenen, J.G.5
-
77
-
-
0034739007
-
Complete genome sequence of Pseudomonas aeruginosa PA01, an opportunistic pathogen
-
Stover, C. K., X. Q. Pham, A. L. Erwin, S. D. Mizoguchi, P. Warrener, M. J. Hickey, F. S. L. Brinkman, W. O. Hufnagle, D. J. Kowalik, M. Lagrou, R. L. Garber, L. Goltry, E. Tolentino, S. Westbrock-Wadman, Y. Yuan, L. L. Brody, S. N. Coulter, K. R. Folger, A. Kas, K. Larbig, R. Lim, K. Smith, D. Spencer, G. K.-S. Wong, Z. Wu, I. T. Paulsen, J. Reizer, M. H. Saier, R. E. W. Hancock, S. Lory, and M. V. Olson. 2000. Complete genome sequence of Pseudomonas aeruginosa PA01, an opportunistic pathogen. Nature 406:959-964.
-
(2000)
Nature
, vol.406
, pp. 959-964
-
-
Stover, C.K.1
Pham, X.Q.2
Erwin, A.L.3
Mizoguchi, S.D.4
Warrener, P.5
Hickey, M.J.6
Brinkman, F.S.L.7
Hufnagle, W.O.8
Kowalik, D.J.9
Lagrou, M.10
Garber, R.L.11
Goltry, L.12
Tolentino, E.13
Westbrock-Wadman, S.14
Yuan, Y.15
Brody, L.L.16
Coulter, S.N.17
Folger, K.R.18
Kas, A.19
Larbig, K.20
Lim, R.21
Smith, K.22
Spencer, D.23
Wong, G.K.-S.24
Wu, Z.25
Paulsen, I.T.26
Reizer, J.27
Saier, M.H.28
Hancock, R.E.W.29
Lory, S.30
Olson, M.V.31
more..
-
78
-
-
0029898080
-
Anaerobic, nitrate-dependent microbial oxidation of ferrous iron
-
Straub, K. L., M. Benz, B. Schink, and F. Widdel. 1996. Anaerobic, nitrate-dependent microbial oxidation of ferrous iron. Appl. Environ. Microbiol. 62:1458-1460.
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 1458-1460
-
-
Straub, K.L.1
Benz, M.2
Schink, B.3
Widdel, F.4
-
79
-
-
0032428054
-
Sulfur oxidation in rice field soil: Activity, enumeration, isolation and characterization of thiosulfate-oxidizing bacteria
-
Stubner, S., T. Wind, and R. Conrad. 1998. Sulfur oxidation in rice field soil: activity, enumeration, isolation and characterization of thiosulfate-oxidizing bacteria. Syst. Appl. Microbiol. 21:569-578.
-
(1998)
Syst. Appl. Microbiol.
, vol.21
, pp. 569-578
-
-
Stubner, S.1
Wind, T.2
Conrad, R.3
-
80
-
-
0344837851
-
Microbial populations stimulated for hexavalent uranium reduction in uranium mine sediment
-
Suzuki, Y., S. D. Kelly, K. M. Kemner, and J. F. Banfield. 2003. Microbial populations stimulated for hexavalent uranium reduction in uranium mine sediment. Appl. Environ. Microbiol. 69:1337-1346.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 1337-1346
-
-
Suzuki, Y.1
Kelly, S.D.2
Kemner, K.M.3
Banfield, J.F.4
-
81
-
-
0344066218
-
Identification and characterization of genes required for biosynthesis and transport of the siderophore vibrioferrin in Vibrio parahaemolyticus
-
Tanabe, T., T. Funahashi, H. Nakao, S. Miyoshi, S. Shinoda, and S. Yamamoto. 2003. Identification and characterization of genes required for biosynthesis and transport of the siderophore vibrioferrin in Vibrio parahaemolyticus. J. Bacteriol. 185:6938-6949.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 6938-6949
-
-
Tanabe, T.1
Funahashi, T.2
Nakao, H.3
Miyoshi, S.4
Shinoda, S.5
Yamamoto, S.6
-
82
-
-
0033956060
-
The COG database: A tool for genome-scale analysis of protein functions and evolution
-
Tatusov, R. L., M. Y. Galperin, D. A. Natale, and E. V. Koonin. 2000. The COG database: a tool for genome-scale analysis of protein functions and evolution. Nucleic Acids Res. 28:33-36.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 33-36
-
-
Tatusov, R.L.1
Galperin, M.Y.2
Natale, D.A.3
Koonin, E.V.4
-
83
-
-
0015168640
-
Thiobacillus denitrificans as an obligate chemolithoautotroph. Cell suspension and enzymic studies
-
Taylor, B. F., and D. S. Hoare. 1971. Thiobacillus denitrificans as an obligate chemolithoautotroph. Cell suspension and enzymic studies. Arch. Mikrobiol. 80:262-276.
-
(1971)
Arch. Mikrobiol.
, vol.80
, pp. 262-276
-
-
Taylor, B.F.1
Hoare, D.S.2
-
84
-
-
0014993547
-
Thiobacillus denitrificans as an obligate chemolithoautotroph. Isolation and growth studies
-
Taylor, B. F., D. S. Hoare, and S. L. Hoare. 1971. Thiobacillus denitrificans as an obligate chemolithoautotroph. Isolation and growth studies. Arch. Mikrobiol. 78:193-204.
-
(1971)
Arch. Mikrobiol.
, vol.78
, pp. 193-204
-
-
Taylor, B.F.1
Hoare, D.S.2
Hoare, S.L.3
-
85
-
-
49549142424
-
A new type of thiosulfate oxidizing, nitrate reducing microorganism: Thiomicrospira denitrificans sp. nov
-
Timmer-Ten Hoor, A. 1975. A new type of thiosulfate oxidizing, nitrate reducing microorganism: Thiomicrospira denitrificans sp. nov. Neth. J. Sea Res. 9:344-350.
-
(1975)
Neth. J. Sea Res.
, vol.9
, pp. 344-350
-
-
Timmer-Ten Hoor, A.1
-
86
-
-
0028673855
-
Reverse siroheme sulfite reductase from Thiobacillus denitrificans
-
Trüper, H. G. 1994. Reverse siroheme sulfite reductase from Thiobacillus denitrificans. Meth. Enzymol. 243:422-426.
-
(1994)
Meth. Enzymol.
, vol.243
, pp. 422-426
-
-
Trüper, H.G.1
-
88
-
-
0030872086
-
Characterization of Thiobacillus thioparus LV43 and its distribution in a chemoautotrophically based groundwater ecosystem
-
Vlasceanu, L., R. Popa, and B. K. Kinkle. 1997. Characterization of Thiobacillus thioparus LV43 and its distribution in a chemoautotrophically based groundwater ecosystem. Appl. Environ. Microbiol. 63:3123-3127.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 3123-3127
-
-
Vlasceanu, L.1
Popa, R.2
Kinkle, B.K.3
-
89
-
-
8844264574
-
Genomic insights into methanotrophy: The complete genome sequence of Methylococcus capsulatus (Bath)
-
Online
-
Ward, N., O. Larsen, J. Sakwa, L. Bruseth, H. Khouri, A. S. Durkin, G. Dimitrov, L. X. Jiang, D. Scanlan, K. H. Kang, M. Lewis, K. E. Nelson, B. Methé, M. Wu, J. F. Heidelberg, I. T. Paulsen, D. Fouts, J. Ravel, H. Tettelin, Q. Ren, T. Read, R. T. DeBoy, R. Seshadri, S. L. Salzberg, H. B. Jensen, N. K. Birkeland, W. C. Nelson, R. J. Dodson, S. H. Grindhaug, I. Holt, I. Eidhammer, I. Jonasen, S. Vanaken, T. Utterback, T. V. Feldblyum, C. M. Fraser, J. R. Lillehaug, and J. A. Eisen. 2004. Genomic insights into methanotrophy: the complete genome sequence of Methylococcus capsulatus (Bath). PLoS Biol. 2:e303. [Online.] http://biology.plosjournals.org.
-
(2004)
PLoS Biol.
, vol.2
-
-
Ward, N.1
Larsen, O.2
Sakwa, J.3
Bruseth, L.4
Khouri, H.5
Durkin, A.S.6
Dimitrov, G.7
Jiang, L.X.8
Scanlan, D.9
Kang, K.H.10
Lewis, M.11
Nelson, K.E.12
Methé, B.13
Wu, M.14
Heidelberg, J.F.15
Paulsen, I.T.16
Fouts, D.17
Ravel, J.18
Tettelin, H.19
Ren, Q.20
Read, T.21
Deboy, R.T.22
Seshadri, R.23
Salzberg, S.L.24
Jensen, H.B.25
Birkeland, N.K.26
Nelson, W.C.27
Dodson, R.J.28
Grindhaug, S.H.29
Holt, I.30
Eidhammer, I.31
Jonasen, I.32
Vanaken, S.33
Utterback, T.34
Feldblyum, T.V.35
Fraser, C.M.36
Lillehaug, J.R.37
Eisen, J.A.38
more..
-
91
-
-
0028149485
-
Identification and sequence analysis of the soxB gene essential for sulfur oxidation of Paracoccus denitrificans GB17
-
Wodara, C., S. Kostka, M. Egert, D. P. Kelly, and C. G. Friedrich. 1994. Identification and sequence analysis of the soxB gene essential for sulfur oxidation of Paracoccus denitrificans GB17. J. Bacteriol. 176:6188-6191.
-
(1994)
J. Bacteriol.
, vol.176
, pp. 6188-6191
-
-
Wodara, C.1
Kostka, S.2
Egert, M.3
Kelly, D.P.4
Friedrich, C.G.5
-
92
-
-
2642562680
-
A challenge for 21st century molecular biology and biochemistry: What are the causes of obligate autotrophy and methanotrophy?
-
Wood, A. P., J. P. Aurikko, and D. P. Kelly. 2004. A challenge for 21st century molecular biology and biochemistry: what are the causes of obligate autotrophy and methanotrophy? FEMS Microbiol. Rev. 28:335-352.
-
(2004)
FEMS Microbiol. Rev.
, vol.28
, pp. 335-352
-
-
Wood, A.P.1
Aurikko, J.P.2
Kelly, D.P.3
-
93
-
-
0033564555
-
Transcription factor GCN4 for control of amino acid biosynthesis also regulates the expression of the gene for lipoamide dehydrogenase
-
Zaman, Z., S. B. Bowman, G. D. Kornfeld, A. J. Brown, and I. W. Dawes. 1999. Transcription factor GCN4 for control of amino acid biosynthesis also regulates the expression of the gene for lipoamide dehydrogenase. Biochem. J. 340:855-862.
-
(1999)
Biochem. J.
, vol.340
, pp. 855-862
-
-
Zaman, Z.1
Bowman, S.B.2
Kornfeld, G.D.3
Brown, A.J.4
Dawes, I.W.5
-
94
-
-
0031456471
-
Cell biology and molecular basis of denitrification
-
Zumft, W. G. 1997. Cell biology and molecular basis of denitrification. Microbiol. Mol. Biol. Rev. 61:533-616.
-
(1997)
Microbiol. Mol. Biol. Rev.
, vol.61
, pp. 533-616
-
-
Zumft, W.G.1
|