Mutation of the cytosolic ribosomal protein-encoding RPS10B gene affects shoot meristematic function in Arabidopsis

BMC Plant Biology

Volumn 12, Issue , 2012, Pages

  Stirnberg, Petra ^a   Liu, Jin Ping ^a,b   Ward, Sally ^a,c   Kendall, Sarah L ^a   Leyser, Ottoline ^a,c  

^a UNIVERSITY OF YORK   (United Kingdom)

^b HAINAN UNIVERSITY   (China)

^c UNIVERSITY OF CAMBRIDGE   (United Kingdom)

Author keywords

Auxin; Axillary bud; CUC; Lateral organ boundary; Leaf polarity; REV; S10e; Shoot branching suppressor; Strigolactone

Indexed keywords

ARABIDOPSIS; EUKARYOTA;

1 NAPHTHYLACETIC ACID; 1-NAPHTHALENEACETIC ACID; ARABIDOPSIS PROTEIN; ARYLACETIC ACID DERIVATIVE; CELL SURFACE RECEPTOR; COMPLEMENTARY DNA; CUC3 PROTEIN, ARABIDOPSIS; F BOX PROTEIN; INDOLEACETIC ACID DERIVATIVE; RIBOSOME PROTEIN; RPS10 PROTEIN, ARABIDOPSIS; TIR1 PROTEIN, ARABIDOPSIS; TRANSCRIPTION FACTOR;

ARABIDOPSIS; ARTICLE; CYTOSOL; DRUG EFFECT; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; INFLORESCENCE; MERISTEM; METABOLISM; MUTATION; PHENOTYPE; PLANT; PLANT GENE; PLANT LEAF; PROMOTER REGION; PROTEIN ANALYSIS;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; CYTOSOL; DNA, COMPLEMENTARY; F-BOX PROTEINS; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; INDOLEACETIC ACIDS; INFLORESCENCE; MERISTEM; MUTATION; NAPHTHALENEACETIC ACIDS; PHENOTYPE; PLANT LEAVES; PLANT SHOOTS; PROMOTER REGIONS, GENETIC; PROTEIN INTERACTION MAPPING; RECEPTORS, CELL SURFACE; RIBOSOMAL PROTEINS; TRANSCRIPTION FACTORS;

EID: 84865855899     PISSN: None     EISSN: 14712229     Source Type: Journal    
DOI: 10.1186/1471-2229-12-160     Document Type: Article

References (127)

1. Long J, Barton MK. Initiation of axillary and floral meristems in Arabidopsis. Dev Biol 2000, 218:341-353. 10.1006/dbio.1999.9572, 10656774.
2. Barton MK. Twenty years on: the inner workings of the shoot apical meristem, a developmental dynamo. Dev Biol 2010, 341:95-113. 10.1016/j.ydbio.2009.11.029, 19961843.
3. Keller T, Abbott J, Moritz T, Doerner P. Arabidopsis REGULATOR OF AXILLARY MERISTEMS1 controls a leaf axil stem cell niche and modulates vegetative development. Plant Cell 2006, 18:598-611. 10.1105/tpc.105.038588, 1383636, 16473968.
4. Müller D, Schmitz G, Theres K. Blind homologous R2R3 Myb genes control the pattern of lateral meristem initiation in Arabidopsis. Plant Cell 2006, 18:586-597. 10.1105/tpc.105.038745, 1383635, 16461581.
5. Talbert PB, Adler HT, Parks DW, Comai L. The REVOLUTA gene is necessary for apical meristem development and for limiting cell divisions in the leaves and stems of Arabidopsis thaliana. Development 1995, 121:2723-2735.
6. Otsuga D, DeGuzman B, Prigge MJ, Drews GN, Clark SE. REVOLUTA regulates meristem initiation at lateral positions. Plant J 2001, 25:223-236. 10.1046/j.1365-313x.2001.00959.x, 11169198.
7. Emery JF, Floyd SK, Alvarez J, Eshed Y, Hawker NP, Izhaki A, Baum SF, Bowman JL. Radial patterning of Arabidopsis shoots by class III HD-ZIP and KANADI genes. Curr Biol 2003, 13:1768-1774. 10.1016/j.cub.2003.09.035, 14561401.
8. Prigge MJ, Otsuga D, Alonso JM, Ecker JR, Drews GN, Clark SE. Class III homeodomain-leucine zipper gene family members have overlapping, antagonistic, and distinct roles in Arabidopsis development. Plant Cell 2005, 17:61-76. 10.1105/tpc.104.026161, 544490, 15598805.
9. Aida M, Ishida T, Fukaki H, Fujisawa H, Tasaka M. Genes involved in organ separation in Arabidopsis: an analysis of the cup-shaped cotyledon mutant. Plant Cell 1997, 9:841-857. 10.1105/tpc.9.6.841, 156962, 9212461.
10. Vroemen CW, Mordhorst AP, Albrecht C, Kwaaitaal MACJ, de Vries SC. The CUP-SHAPED COTYLEDON3 gene is required for boundary and shoot meristem formation in Arabidopsis. Plant Cell 2003, 15:1563-1577. 10.1105/tpc.012203, 165401, 12837947.
11. Hibara K, Karim MR, Takada S, Taoka K, Furutani M, Aida M, Tasaka M. Arabidopsis CUP-SHAPED COTYLEDON3 regulates postembryonic shoot meristem and organ boundary formation. Plant Cell 2006, 18:2946-2957. 10.1105/tpc.106.045716, 1693926, 17122068.
12. Raman S, Greb T, Peaucelle A, Blein T, Laufs P, Theres K. Interplay of miR164, CUP-SHAPED COTYLEDON genes and LATERAL SUPPRESSOR controls axillary meristem formation in Arabidopsis thaliana. Plant J 2008, 55:65-76. 10.1111/j.1365-313X.2008.03483.x, 18346190.
13. Takada S, Hibara K, Ishida T, Tasaka M. The CUP-SHAPED COTYLEDON1 gene of Arabidopsis regulates shoot apical meristem formation. Development 2001, 128:1127-1135.
14. Heisler MG, Ohno C, Das P, Sieber P, Reddy GV, Long JA, Meyerowitz EM. Patterns of auxin transport and gene expression during primordium development revealed by live imaging of the Arabidopsis inflorescence meristem. Curr Biol 2005, 15:1899-1911. 10.1016/j.cub.2005.09.052, 16271866.
15. McConnell JR, Emery J, Eshed Y, Bao N, Bowman J, Barton MK. Role of PHABULOSA and PHAVOLUTA in determining radial patterning in shoots. Nature 2001, 411:709-713. 10.1038/35079635, 11395776.
16. Kerstetter RA, Bollman K, Taylor RA, Bomblies K, Poethig RS. KANADI regulates organ polarity in Arabidopsis. Nature 2001, 411:706-709. 10.1038/35079629, 11395775.
17. Eshed Y, Baum SF, Perea JV, Bowman JL. Establishment of polarity in lateral organs of plants. Curr Biol 2001, 11:1251-1260. 10.1016/S0960-9822(01)00392-X, 11525739.
18. Eshed Y, Izhaki A, Baum SF, Floyd SK, Bowman JL. Asymmetric leaf development and blade expansion in Arabidopsis are mediated by KANADI and YABBY activities. Development 2004, 131:2997-3006. 10.1242/dev.01186, 15169760.
19. Izhaki A, Bowman JL. KANADI and class III HD-Zip gene families regulate embryo patterning and modulate auxin flow during embryogenesis in Arabidopsis. Plant Cell 2007, 19:495-508. 10.1105/tpc.106.047472, 1867338, 17307928.
20. Green KA, Prigge MJ, Katzman RB, Clark SE. CORONA, a member of the class III homeodomain leucine zipper gene family in Arabidopsis, regulates stem cell specification and organogenesis. Plant Cell 2005, 17:691-704. 10.1105/tpc.104.026179, 1069692, 15705957.
21. Kim J, Jung JH, Reyes JL, Kim YS, Kim SY, Chung KS, Kim JA, Lee M, Lee Y, Narry KV, Chua NH, Park CM. microRNA-directed cleavage of ATHB15 mRNA regulates vascular development in Arabidopsis inflorescence stems. Plant J 2005, 42:84-94. 10.1111/j.1365-313X.2005.02354.x, 1382282, 15773855.
22. Williams L, Grigg SP, Xie M, Christensen S, Fletcher JC. Regulation of Arabidopsis shoot apical meristem and lateral organ formation by microRNA miR166g and its AtHD-ZIP target genes. Development 2005, 132:3657-3668. 10.1242/dev.01942, 16033795.
23. Aida M, Tasaka M. Genetic control of shoot organ boundaries. Curr Opin Plant Biol 2006, 9:72-77. 10.1016/j.pbi.2005.11.011, 16337829.
24. Bilsborough GD, Runions A, Barkoulas M, Jenkins HW, Hasson A, Galinha C, Laufs P, Hay A, Prusinkiewicz P, Tsiantis M. Model for the regulation of Arabidopsis thaliana leaf margin development. Proc Natl Acad Sci U S A 2011, 108:3424-3429. 10.1073/pnas.1015162108, 3044365, 21300866.
25. Devitt ML, Stafstrom JP. Cell cycle regulation during growth-dormancy cycles in pea axillary buds. Plant Mol Biol 1995, 29:255-265. 10.1007/BF00043650, 7579177.
26. Tatematsu K, Ward S, Leyser O, Kamiya Y, Nambara E. Identification of cis-elements that regulate gene expression during initiation of axillary bud outgrowth in Arabidopsis. Plant Physiol 2005, 138:757-766. 10.1104/pp.104.057984, 1150394, 15908603.
27. Martín-Trillo M, Cubas P. TCP genes: a family snapshot ten years later. Trends Plant Sci 2010, 15:31-39. 10.1016/j.tplants.2009.11.003, 19963426.
28. Aguilar-Martínez JA, Poza-Carrión C, Cubas P. Arabidopsis BRANCHED1 acts as an integrator of branching signals within axillary buds. Plant Cell 2007, 19:458-472. 10.1105/tpc.106.048934, 1867329, 17307924.
29. Finlayson SA. Arabidopsis TEOSINTE BRANCHED-LIKE 1 regulates axillary bud outgrowth and is homologous to monocot TEOSINTE BRANCHED1. Plant Cell Physiol 2007, 48:667-677. 10.1093/pcp/pcm044, 17452340.
30. Müller D, Leyser O. Auxin, cytokinin and the control of shoot branching. Ann Bot 2011, 107:1203-1212. 10.1093/aob/mcr069, 3091808, 21504914.
31. Vernoux T, Besnard F, Traas J. Auxin at the shoot apical meristem. Cold Spring Harb Perspect Biol 2010, 2:a001487. 10.1101/cshperspect.a001487, 2845202, 20452945.
32. Benjamins R, Quint A, Weijers D, Hooykaas P, Offringa R. The PINOID protein kinase regulates organ development in Arabidopsis by enhancing polar auxin transport. Development 2001, 128:4057-4067.
33. Friml J, Yang X, Michniewicz M, Weijers D, Quint A, Tietz O, Benjamins R, Ouwerkerk PB, Ljung K, Sandberg G, Hooykaas PJJ, Palme K, Offringa R. A PINOID-dependent binary switch in apical-basal PIN polar targeting directs auxin efflux. Science 2004, 306:862-865. 10.1126/science.1100618, 15514156.
34. Huang F, Zago MK, Abas L, van Marion A, Galván-Ampudia CS, Offringa R. Phosphorylation of conserved PIN motifs directs Arabidopsis PIN1 polarity and auxin transport. Plant Cell 2010, 22:1129-1142. 10.1105/tpc.109.072678, 2879764, 20407025.
35. Bowman JL, Floyd SK. Patterning and polarity in seed plant shoots. Annu Rev Plant Biol 2008, 59:67-88. 10.1146/annurev.arplant.57.032905.105356, 18031217.
36. Vernoux T, Brunoud G, Farcot E, Morin V, Van den Daele H, Legrand J, Oliva M, Das P, Larrieu A, Wells D, Guédon Y, Armitage L, Picard F, Guyomarch S, Cellier C, Parry G, Koumproglou R, Doonan JH, Estelle M, Godin C, Kepinski S, Bennett M, De Veylder L, Traas J. The auxin signalling network translates dynamic input into robust patterning at the shoot apex. Mol Syst Biol 2011, 7:508. 3167386, 21734647.
37. Furutani M, Vernoux T, Traas J, Kato T, Tasaka M, Aida M. PIN-FORMED1 and PINOID regulate boundary formation and cotyledon development in Arabidopsis embryogenesis. Development 2004, 131:5021-5030. 10.1242/dev.01388, 15371311.
38. Zhou GK, Kubo M, Zhong R, Demura T, Ye ZH. Overexpression of miR165 affects apical meristem formation, organ polarity establishment and vascular development in Arabidopsis. Plant Cell Physiol 2007, 48:391-404. 10.1093/pcp/pcm008, 17237362.
39. Benková E, Michniewicz M, Sauer M, Teichmann T, Seifertová D, Jürgens G, Friml J. Local, efflux-dependent auxin gradients as a common module for plant organ formation. Cell 2003, 115:591-602. 10.1016/S0092-8674(03)00924-3, 14651850.
40. Reinhardt D, Pesce ER, Stieger P, Mandel T, Baltensperger K, Bennett M, Traas J, Friml J, Kuhlemeier C. Regulation of phyllotaxis by polar auxin transport. Nature 2003, 426:255-260. 10.1038/nature02081, 14628043.
41. Wenzel CL, Schuetz M, Yu Q, Mattsson J. Dynamics of MONOPTEROS and PIN-FORMED1 expression during leaf vein pattern formation in Arabidopsis thaliana. Plant J 2007, 49:387-398. 10.1111/j.1365-313X.2006.02977.x, 17217464.
42. Ilegems M, Douet V, Meylan-Bettex M, Uyttewaal M, Brand L, Bowman JL, Stieger PA. Interplay of auxin, KANADI and Class III HD-ZIP transcription factors in vascular tissue formation. Development 2010, 137:975-984. 10.1242/dev.047662, 20179097.
43. Li CJ, Bangerth F. Autoinhibition of indoleaceticacid transport in the shoots of two-branched pea (Pisum sativum) plants and its relationship to correlative dominance. Physiol Plant 1999, 106:415-420.
44. Prusinkiewicz P, Crawford S, Smith RS, Ljung K, Bennett T, Ongaro V, Leyser O. Control of bud activation by an auxin transport switch. Proc Natl Acad Sci U S A 2009, 106:17431-17436. 10.1073/pnas.0906696106, 2751654, 19805140.
45. Leyser O. Auxin, self-organisation, and the colonial nature of plants. Curr Biol 2011, 21:R331-R337. 10.1016/j.cub.2011.02.031, 21549955.
46. Li CJ, Guevara E, Herrera J, Bangerth F. Effect of apex excision and replacement by 1-naphthylacetic acid on cytokinin concentration and apical dominance in pea plants. Physiol Plant 1995, 94:465-469.
47. Tanaka M, Takei K, Kojima M, Sakakibara H, Mori H. Auxin controls local cytokinin biosynthesis in the nodal stem in apical dominance. Plant J 2006, 45:1028-1036. 10.1111/j.1365-313X.2006.02656.x, 16507092.
48. Sachs T, Thimann KV. The role of auxins and cytokinins in the release of buds from dominance. Amer J Bot 1967, 54:136-144.
49. Foo E, Bullier E, Goussot M, Foucher F, Rameau C, Beveridge CA. The branching gene RAMOSUS1 mediates interactions among two novel signals and auxin in pea. Plant Cell 2005, 17:464-474. 10.1105/tpc.104.026716, 548819, 15659639.
50. Gomez-Roldan V, Fermas S, Brewer PB, Puech-Pagès V, Dun EA, Pillot JP, Letisse F, Matusova R, Danoun S, Portais JC, Bouwmeester H, Bécard G, Beveridge CA, Rameau C, Rochange SF. Strigolactone inhibition of shoot branching. Nature 2008, 455:189-194. 10.1038/nature07271, 18690209.
51. Umehara M, Hanada A, Yoshida S, Akiyama K, Arite T, Takeda-Kamiya N, Magome H, Kamiya Y, Shirasu K, Yoneyama K, Kyozuka J, Yamaguchi S. Inhibition of shoot branching by new terpenoid plant hormones. Nature 2008, 455:195-200. 10.1038/nature07272, 18690207.
52. Hayward A, Stirnberg P, Beveridge C, Leyser O. Interactions between auxin and strigolactone in shoot branching control. Plant Physiol 2009, 151:400-412. 10.1104/pp.109.137646, 2735998, 19641034.
53. Brewer PB, Dun EA, Ferguson BJ, Rameau C, Beveridge CA. Strigolactone acts downstream of auxin to regulate bud outgrowth in pea and Arabidopsis. Plant Physiol 2009, 150:482-493. 10.1104/pp.108.134783, 2675716, 19321710.
54. Stirnberg P, Van de Sande K, Leyser HMO. MAX1 and MAX2 control shoot lateral branching in Arabidopsis. Development 2002, 129:1131-1141.
55. Crawford S, Shinohara N, Sieberer T, Williamson L, George G, Hepworth J, Müller D, Domagalska MA, Leyser O. Strigolactones enhance competition between shoot branches by dampening auxin transport. Development 2010, 137:2905-2913. 10.1242/dev.051987, 20667910.
56. Tsuchiya Y, Vidaurre D, Toh S, Hanada A, Nambara E, Kamiya Y, Yamaguchi S, McCourt P. A small-molecule screen identifies new functions for the plant hormone strigolactone. Nat Chem Biol 2010, 6:741-749. 10.1038/nchembio.435, 20818397.
57. Liu YG, Nagaki K, Fujita M, Kawaura K, Uozumi M, Ogihara Y. Development of an efficient maintenance and screening system for large-insert genomic DNA libraries of hexaploid wheat in a transformation-competent artificial chromosome (TAC) vector. Plant J 2000, 23:687-695. 10.1046/j.1365-313x.2000.00827.x, 10972894.
58. Hempel FD, Feldman LJ. Bi-directional inflorescence development in Arabidopsis thaliana: Acropetal initiation of flowers and basipetal initiation of paraclades. Planta 1994, 192:276-286.
59. Chatfield SP, Stirnberg P, Forde BG, Leyser O. The hormonal regulation of axillary bud growth in Arabidopsis. Plant J 2000, 24:159-169. 10.1046/j.1365-313x.2000.00862.x, 11069691.
60. Bennett T, Sieberer T, Willett B, Booker J, Luschnig C, Leyser O. The Arabidopsis MAX pathway controls shoot branching by regulating auxin transport. Curr Biol 2006, 16:553-563. 10.1016/j.cub.2006.01.058, 16546078.
61. Ulmasov T, Murfett J, Hagen G, Guilfoyle TJ. Aux/IAA proteins repress expression of reporter genes containing natural and highly active synthetic auxin response elements. Plant Cell 1997, 9:1963-1971. 157050, 9401121.
62. Sorefan K, Booker J, Haurogne K, Goussot M, Bainbridge K, Foo E, Chatfield S, Ward S, Beveridge C, Rameau C, Leyser O. MAX4 and RMS1 are orthologous dioxygenase-like genes that regulate shoot branching in Arabidopsis and pea. Genes Dev 2003, 17:1469-1474. 10.1101/gad.256603, 196077, 12815068.
63. Chapman EJ, Estelle M. Mechanism of auxin-regulated gene expression in plants. Annu Rev Genet 2009, 43:265-285. 10.1146/annurev-genet-102108-134148, 19686081.
64. Gray WM, Kepinski S, Rouse D, Leyser O, Estelle M. Auxin regulates SCFTIR1-dependent degradation of AUX/IAA proteins. Nature 2001, 414:271-276. 10.1038/35104500, 11713520.
65. Lincoln C, Britton JH, Estelle M. Growth and development of the axr1 mutants of Arabidopsis. Plant Cell 1990, 2:1071-1080. 159955, 1983791.
66. Stirnberg P, Chatfield SP, Leyser HMO. AXR1 acts after lateral bud formation to inhibit lateral bud growth in Arabidopsis. Plant Physiol 1999, 121:839-847. 10.1104/pp.121.3.839, 59446, 10557232.
67. Chaudhury AM, Letham S, Craig S, Dennis ES. amp1 - a mutant with high cytokinin levels and altered embryonic pattern, faster vegetative growth, constitutive photomorphogenesis and precocious flowering. Plant Journal 1993, 4:907-916.
68. Chin-Atkins AN, Craig S, Hocart CH, Dennis ES, Chaudhury AM. Increased endogenous cytokinin in the Arabidopsis amp1 mutant corresponds with de-etiolation responses. Planta 1996, 198:549-556.
69. Helliwell CA, Chin-Atkins AN, Wilson IW, Chapple R, Dennis ES, Chaudhury A. The Arabidopsis AMP1 gene encodes a putative glutamate carboxypeptidase. Plant Cell 2001, 13:2115-2125. 139455, 11549767.
70. Saibo NJM, Vriezen WH, De Grauwe L, Azmi A, Prinsen E, Van der Straeten D. A comparative analysis of the Arabidopsis mutant amp1-1 and a novel weak amp1 allele reveals new functions of the AMP1 protein. Planta 2007, 225:831-842. 10.1007/s00425-006-0395-9, 17006669.
71. Vidaurre DP, Ploense S, Krogan NT, Berleth T. AMP1 and MP antagonistically regulate embryo and meristem development in Arabidopsis. Development 2007, 134:2561-2567. 10.1242/dev.006759, 17553903.
72. Lin R, Ding L, Casola C, Ripoll DR, Feschotte C, Wang H. Transposase-derived transcription factors regulate light signaling in Arabidopsis. Science 2007, 318:1302-1305. 10.1126/science.1146281, 2151751, 18033885.
73. Stirnberg P, Zhao S, Williamson L, Ward S, Leyser O. FHY3 promotes shoot branching and stress tolerance in Arabidopsis in an AXR1-dependent manner. Plant J 2012, e-pub ahead of print.
74. Zhang J, Nodzyński T, Pěnčík A, Rolčík J, Friml J. PIN phosphorylation is sufficient to mediate PIN polarity and direct auxin transport. Proc Natl Acad Sci U S A 2010, 107:918-922. 10.1073/pnas.0909460107, 2818920, 20080776.
75. Bennett SRM, Alvarez J, Bossinger G, Smyth DR. Morphogenesis in pinoid mutants of Arabidopsis thaliana. Plant J 1995, 8:505-520.
76. Cheng Y, Qin G, Dai X, Zhao Y. NPY1, a BTB-NPH3-like protein, plays a critical role in auxin-regulated organogenesis in Arabidopsis. Proc Natl Acad Sci U S A 2007, 104:18825-18829. 10.1073/pnas.0708506104, 2141861, 18000043.
77. Kleinboelting N, Huep G, Kloetgen A, Viehoever P, Weisshaar B. GABI-Kat SimpleSearch: new features of the Arabidopsis thaliana T-DNA mutant database. Nucleic Acids Res 2012, 40:D1211-D1215. 10.1093/nar/gkr1047, 3245140, 22080561.
78. Barakat A, Szick-Miranda K, Chang IF, Guyot R, Blanc G, Cooke R, Delseny M, Bailey-Serres J. The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome. Plant Physiol 2001, 127:398-415. 10.1104/pp.010265, 125077, 11598216.
79. Baerenfaller K, Grossmann J, Grobei MA, Hull R, Hirsch-Hoffmann M, Yalovsky S, Zimmermann P, Grossniklaus U, Gruissem W, Baginsky S. Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics. Science 2008, 320:938-941. 10.1126/science.1157956, 18436743.
80. Lecompte O, Ripp R, Thierry JC, Moras D, Poch O. Comparative analysis of ribosomal proteins in complete genomes: an example of reductive evolution at the domain scale. Nucleic Acids Res 2002, 30:5382-5390. 10.1093/nar/gkf693, 140077, 12490706.
81. Ferreira-Cerca S, Pöll G, Gleizes PE, Tschochner H, Milkereit P. Roles of eukaryotic ribosomal proteins in maturation and transport of pre-18S rRNA and ribosome function. Mol Cell 2005, 20:263-275. 10.1016/j.molcel.2005.09.005, 16246728.
82. Rabl J, Leibundgut M, Ataide SF, Haag A, Ban N. Crystal structure of the eukaryotic 40S ribosomal subunit in complex with initiation factor 1. Science 2011, 331:730-736. 10.1126/science.1198308, 21205638.
83. Westermann P, Nygård O. The spatial arrangement of the complex between eukaryotic initiation factor eIF-3 and 40S ribosomal subunit. Crosslinking between factor and ribosomal proteins. Biochim Biophys Acta 1983, 741:103-108. 10.1016/0167-4781(83)90015-5, 6615839.
84. Hinnebusch AG. eIF3: a versatile scaffold for translation initiation complexes. Trends Biochem Sci 2006, 31:553-562. 10.1016/j.tibs.2006.08.005, 16920360.
85. Byrne ME. A role for the ribosome in development. Trends Plant Sci 2009, 14:512-519. 10.1016/j.tplants.2009.06.009, 19716746.
86. Creff A, Sormani R, Desnos T. The two Arabidopsis RPS6 genes, encoding for cytoplasmic ribosomal proteins S6, are functionally equivalent. Plant Mol Biol 2010, 73:533-546. 10.1007/s11103-010-9639-y, 20437080.
87. Falcone Ferreyra ML, Pezza A, Biarc J, Burlingame AL, Casati P. Plant L10 ribosomal proteins have different roles during development and translation under ultraviolet-B stress. Plant Physiol 2010, 153:1878-1894. 10.1104/pp.110.157057, 2923885, 20516338.
88. Horiguchi G, Mollá-Morales A, Pérez-Pérez JM, Kojima K, Robles P, Ponce MR, Micol JL, Tsukaya H. Differential contributions of ribosomal protein genes to Arabidopsis thaliana leaf development. Plant J 2011, 65:724-736. 10.1111/j.1365-313X.2010.04457.x, 21251100.
89. Rosado A, Sohn EJ, Drakakaki G, Pan S, Swidergal A, Xiong Y, Kang BH, Bressan RA, Raikhel NV. Auxin-mediated ribosomal biogenesis regulates vacuolar trafficking in Arabidopsis. Plant Cell 2010, 22:143-158. 10.1105/tpc.109.068320, 2828701, 20061553.
90. Van Minnebruggen A, Neyt P, De Groeve S, Coussens G, Ponce MR, Micol JL, Van Lijsebettens M. The ang3 mutation identified the ribosomal protein gene RPL5B with a role in cell expansion during organ growth. Physiol Plant 2010, 138:91-101. 10.1111/j.1399-3054.2009.01301.x, 19878482.
91. Szakonyi D, Byrne ME. Ribosomal protein L27a is required for growth and patterning in Arabidopsis thaliana. Plant J 2011, 65:269-281. 10.1111/j.1365-313X.2010.04422.x, 21223391.
92. Doherty L, Sheen MR, Vlachos A, Choesmel V, O'Donohue MF, Clinton C, Schneider HE, Sieff CA, Newburger PE, Ball SE, Niewiadomska E, Matysiak M, Glader B, Arceci RJ, Farrar JE, Atsidaftos E, Lipton JM, Gleizes PE, Gazda HT. Ribosomal protein genes RPS10 and RPS26 are commonly mutated in Diamond-Blackfan anemia. Am J Hum Genet 2010, 86:222-228. 10.1016/j.ajhg.2009.12.015, 2820177, 20116044.
93. Freed EF, Bleichert F, Dutca LM, Baserga SJ. When ribosomes go bad: diseases of ribosome biogenesis. Mol Biosyst 2010, 6:481-493. 10.1039/b919670f, 2965583, 20174677.
94. Warner JR, McIntosh KB. How common are extraribosomal functions of ribosomal proteins?. Mol Cell 2009, 34:3-11. 10.1016/j.molcel.2009.03.006, 2679180, 19362532.
95. Deisenroth C, Zhang Y. Ribosome biogenesis surveillance: probing the ribosomal protein-Mdm2-p53 pathway. Oncogene 2010, 29:4253-4260. 10.1038/onc.2010.189, 20498634.
96. Dutt S, Narla A, Lin K, Mullally A, Abayasekara N, Megerdichian C, Wilson FH, Currie T, Khanna-Gupta A, Berliner N, Kutok JL, Ebert BL. Haploinsufficiency for ribosomal protein genes causes selective activation of p53 in human erythroid progenitor cells. Blood 2011, 117:2567-2576. 10.1182/blood-2010-07-295238, 3062351, 21068437.
97. Narla A, Hurst SN, Ebert BL. Ribosome defects in disorders of erythropoiesis. Int J Hematol 2011, 93:144-149. 10.1007/s12185-011-0776-0, 21279816.
98. Abel S, Oeller PW, Theologis A. Early auxin-induced genes encode short-lived nuclear proteins. Proc Natl Acad Sci U S A 1994, 91:326-330. 10.1073/pnas.91.1.326, 42940, 8278386.
99. Zenser N, Ellsmore A, Leasure C, Callis J. Auxin modulates the degradation rate of Aux/IAA proteins. Proc Natl Acad Sci U S A 2001, 98:11795-11800. 10.1073/pnas.211312798, 58810, 11573012.
100. Nishimura T, Wada T, Yamamoto KT, Okada K. The Arabidopsis STV1 protein, responsible for translation reinitiation, is required for auxin-mediated gynoecium patterning. Plant Cell 2005, 17:2940-2953. 10.1105/tpc.105.036533, 1276021, 16227452.
101. Brodersen P, Sakvarelidze-Achard L, Bruun-Rasmussen M, Dunoyer P, Yamamoto YY, Sieburth L, Voinnet O. Widespread translational inhibition by plant miRNAs and siRNAs. Science 2008, 320:1185-1190. 10.1126/science.1159151, 18483398.
102. Lanet E, Delannoy E, Sormani R, Floris M, Brodersen P, Crété P, Voinnet O, Robaglia C. Biochemical evidence for translational repression by Arabidopsis microRNAs. Plant Cell 2009, 21:1762-1768. 10.1105/tpc.108.063412, 2714937, 19531599.
103. Husbands AY, Chitwood DH, Plavskin Y, Timmermans MCP. Signals and prepatterns: new insights into organ polarity in plants. Genes Dev 2009, 23:1986-1997. 10.1101/gad.1819909, 2751976, 19723761.
104. Wang CY, Chen YQ, Liu Q. Sculpting the meristem: the roles of miRNAs in plant stem cells. Biochem Biophys Res Commun 2011, 409:363-366. 10.1016/j.bbrc.2011.04.123, 21570951.
105. Pinon V, Etchells JP, Rossignol P, Collier SA, Arroyo JM, Martienssen RA, Byrne ME. Three PIGGYBACK genes that specifically influence leaf patterning encode ribosomal proteins. Development 2008, 135:1315-1324. 10.1242/dev.016469, 18305008.
106. Braybrook SA, Kuhlemeier C. How a plant builds leaves. Plant Cell 2010, 22:1006-1018. 10.1105/tpc.110.073924, 2879743, 20424178.
107. Yao Y, Ling Q, Wang H, Huang H. Ribosomal proteins promote leaf adaxial identity. Development 2008, 135:1325-1334. 10.1242/dev.017913, 18305007.
108. Mallory AC, Dugas DV, Bartel DP, Bartel B. MicroRNA regulation of NAC-domain targets is required for proper formation and separation of adjacent embryonic, vegetative, and floral organs. Curr Biol 2004, 14:1035-1046. 10.1016/j.cub.2004.06.022, 15202996.
109. Baker CC, Sieber P, Wellmer F, Meyerowitz EM. The early extra petals1 mutant uncovers a role for microRNA miR164c in regulating petal number in Arabidopsis. Curr Biol 2005, 15:303-315. 10.1016/j.cub.2005.02.017, 15723790.
110. Sieber P, Wellmer F, Gheyselinck J, Riechmann JL, Meyerowitz EM. Redundancy and specialization among plant microRNAs: role of the MIR164 family in developmental robustness. Development 2007, 134:1051-1060. 10.1242/dev.02817, 17287247.
111. Byrne ME, Simorowski J, Martienssen RA. ASYMMETRIC LEAVES1 reveals knox gene redundancy in Arabidopsis. Development 2002, 129:1957-1965.
112. Xu B, Li Z, Zhu Y, Wang H, Ma H, Dong A, Huang H. Arabidopsis genes AS1, AS2, and JAG negatively regulate boundary-specifying genes to promote sepal and petal development. Plant Physiol 2008, 146:566-575. 2245835, 18156293.
113. Koyama T, Mitsuda N, Seki M, Shinozaki K, Ohme-Takagi M. TCP transcription factors regulate the activities of ASYMMETRIC LEAVES1 and miR164, as well as the auxin response, during differentiation of leaves in Arabidopsis. Plant Cell 2010, 22:3574-3588. 10.1105/tpc.110.075598, 3015130, 21119060.
114. Mordhorst AP, Voerman KJ, Hartog MV, Meijer EA, Van Went J, Koornneef M, de Vries SC. Somatic embryogenesis in Arabidopsis thaliana is facilitated by mutations in genes repressing meristematic cell divisions. Genetics 1998, 149:549-563. 1460201, 9611173.
115. Rupp HM, Frank M, Werner T, Strnad M, Schmülling T. Increased steady state mRNA levels of the STM and KNAT1 homeobox genes in cytokinin overproducing Arabidopsis thaliana indicate a role for cytokinins in the shoot apical meristem. Plant J 1999, 18:557-563. 10.1046/j.1365-313X.1999.00472.x, 10417706.
116. McIntosh KB, Bonham-Smith PC. Ribosomal protein gene regulation: what about plants?. Can J Bot 2006, 84:342-362.
117. Hammond MC, Wachter A, Breaker RR. A plant 5S ribosomal RNA mimic regulates alternative splicing of transcription factor IIIA pre-mRNAs. Nat Struct Mol Biol 2009, 16:541-549. 10.1038/nsmb.1588, 2680232, 19377483.
118. Rosado A, Raikhel NV. Application of the gene dosage balance hypothesis to auxin-related ribosomal mutants in Arabidopsis. Plant Signal Behav 2010, 5:450-452. 10.4161/psb.5.4.11341, 2958597, 20383066.
119. Stirnberg P, Furner IJ, Leyser HMO. MAX2 participates in an SCF complex which acts locally at the node to suppress shoot branching. Plant J 2007, 50:80-94. 10.1111/j.1365-313X.2007.03032.x, 17346265.
120. Woo HR, Chung KM, Park JH, Oh SA, Ahn T, Hong SH, Jang SK, Nam HG. ORE9, an F-box protein that regulates leaf senescence in Arabidopsis. Plant Cell 2001, 13:1779-1790. 139127, 11487692.
121. Liang J, Zhao L, Challis R, Leyser O. Strigolactone regulation of shoot branching in chrysanthemum (Dendranthema grandiflorum). J Exp Bot 2010, 61:3069-3078. 10.1093/jxb/erq133, 2892150, 20478970.
122. Ingolia NT, Ghaemmaghami S, Newman JRS, Weissman JS. Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling. Science 2009, 324:218-223. 10.1126/science.1168978, 2746483, 19213877.
123. Leyser HMO, Lincoln CA, Timpte C, Lammer D, Turner J, Estelle M. Arabidopsis auxin-resistance gene AXR1 encodes a protein related to ubiquitin-activating enzyme E1. Nature 1993, 364:161-164. 10.1038/364161a0, 8321287.
124. Konieczny A, Ausubel FM. A procedure for mapping Arabidopsis mutations using co-dominant ecotype-specific PCR-based markers. Plant J 1993, 4:403-410. 10.1046/j.1365-313X.1993.04020403.x, 8106085.
125. Neff MM, Neff JD, Chory J, Pepper AE. dCAPS, a simple technique for the genetic analysis of single nucleotide polymorphisms: experimental applications in Arabidopsis thaliana genetics. Plant J 1998, 14:387-392. 10.1046/j.1365-313X.1998.00124.x, 9628033.
126. Clough SJ, Bent AF. Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J 1998, 16:735-743. 10.1046/j.1365-313x.1998.00343.x, 10069079.
127. Gleave AP. A versatile binary vector system with a T-DNA organisational structure conducive to efficient integration of cloned DNA into the plant genome. Plant Mol Biol 1992, 20:1203-1207. 10.1007/BF00028910, 1463857.