KANADI and class III HD-Zip gene families regulate embryo patterning and modulate auxin flow during embryogenesis in Arabidopsis

Plant Cell

Volumn 19, Issue 2, 2007, Pages 495-508

  Izhaki, Anat ^a   Bowman, John L ^a,b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b MONASH UNIVERSITY   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

GENES; HORMONES; PLANTS (BOTANY);

ARABIDOPSIS; AUXIN FLOW; EMBRYO PATTERNING; EMBRYOGENESIS;

GENETIC ENGINEERING;

GENES; HORMONES; PLANTS;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 34250686536     PISSN: 10404651     EISSN: 1532298X     Source Type: Journal    
DOI: 10.1105/tpc.106.047472     Document Type: Article

References (56)

1. Abas, L., Benjamins, R., Malenica, N., Paciorek, T., Wirniewska, J., Moulinier-Anzola, J.C., Sieberer, T., Friml, J., and Luschnig, C. (2006). Intracellular trafficking and proteolysis of the Arabidopsis auxin-efflux facilitator PIN2 are involved in root gravitropism. Nat. Cell Biol. 8: 249-256.
2. Baima, S., Nobili, F., Sessa, G., Lucchetti, S., Ruberti, I., and Morelli, G. (1995). The expression of the Athb-8 homeobox gene is restricted to provascular cells in Arabidopsis thaliana. Development 121: 4171-4182.
3. Barton, M.K., and Poethig, R.S. (1993). Formation of the shoot apical meristem in Arabidopsis thaliana: An analysis of development in the wild type and in the shoot meristemless mutant. Development 119: 823-831.
4. Benkova, E., Michniewicz, M., Sauer, M., Teichmann, T., Seifertova, D., Jurgens, G., and Friml, J. (2003). Local, efflux-dependent auxin gradients as a common module for plant organ formation. Cell 115: 591-602.
5. Berger, F., Linstead, P., Dolan, L., and Haseloff, J. (1998). Stomata patterning on the hypocotyl of Arabidopsis thaliana is controlled by genes involved in the control of root epidermis patterning. Dev. Biol. 194: 226-234.
6. Berleth, T., and Jurgens, G. (1993). The role of the Monopteros gene in organizing the basal body region of the Arabidopsis embryo. Development 118: 575-587.
7. Blilou, I., Xu, J., Wildwater, M., Willemsen, V., Paponov, I., Friml, J., Heidstra, R., Aida, M., Palme, K., and Scheres, B. (2005). The PIN auxin efflux facilitator network controls growth and patterning in Arabidopsis roots. Nature 433: 39-44.
8. Busse, J.S., and Evert, R.F. (1999). Vascular differentiation and transition in the seedling of Arabidopsis thaliana (Brassicaceae). Int. J. Plant Sci. 160: 241-251.
9. Cheng, Y., Dai, X., and Zhao, Y. (2006). Auxin biosynthesis by the YUCCA flavin monooxygenases controls the formation of floral organs and vascular tissues in Arabidopsis. Genes Dev. 20: 1790-1799.
10. de Reuille, P.B., Bohn-Courseau, I., Ljung, K., Morin, H., Carraro, N., Godin, C., and Traas, J. (2006). Computer simulations reveal properties of the cell-cell signaling network at the shoot apex in Arabidopsis. Proc. Natl. Acad. Sci. USA 103: 1627-1632.
11. Emery, J.F., Floyd, S.K., Alvarez, J., Eshed, Y., Hawker, N.P., Izhaki, A., Baum, S.F., and Bowman, J.L. (2003). Radial patterning of Arabidopsis shoots by class IIIHD-ZIP and KANADI genes. Curr. Biol. 13: 1768-1774.
12. Eshed, Y., Baum, S.F., and Bowman, J.L. (1999). Distinct mechanisms promote polarity establishment in carpels of Arabidopsis. Cell 99: 199-209.
13. Eshed, Y., Baum, S.F., Perea, J.V., and Bowman, J.L. (2001). Establishment of polarity in lateral organs of plants. Curr. Biol. 11: 1251-1260.
14. Eshed, Y., Izhaki, A., Baum, S.F., Floyd, S.K., and Bowman, J.L. (2004). Asymmetric leaf development and blade expansion in Arabidopsis are mediated by KANADI and YABBY activities. Development 131: 2997-3006.
15. Fletcher, L.C., Brand, U., Running, M.P., Simon, R., and Meyerowitz, E.M. (1999). Signaling of cell fate decisions by CLAVATA3 in Arabidopsis shoot meristems. Science 283: 1911-1914.
16. Floyd, S.K., and Bowman, J.L. (2006). Distinct developmental mechanisms reflect the independent origins of leaves in vascular plants. Curr. Biol. 16: 1911-1917.
17. Floyd, S.K., and Bowman, J.L. (2007). The ancestral patterning toolkit of land plants. Int. J. Plant Sci. 168: 1-35.
18. Floyd, S.K., Zalewski, C.S., and Bowman, J.L. (2006). Evolution of class III homeodomain-leucine zipper genes in streptophytes. Genetics 173: 373-388.
19. Friml, J., Benkova, E., Blilou, I., Wisniewska, J., Hamann, T., Ljung, K., Woody, S., Sandberg, G., Scheres, B., Jurgens, G., and Palme, K. (2002). AtPIN4 mediates sink-driven auxin gradients and root patterning in Arabidopsis. Cell 108: 661-673.
20. Friml, J., Vieten, A., Sauer, M., Weijers, D., Schwarz, H., Hamann, T., Offringa, R., and Jurgens, G. (2003). Efflux-dependent auxin gradients establish the apical-basal axis of Arabidopsis. Nature 426: 147-153.
21. Friml, J., et al. (2004). A PINOID-dependent binary switch in apicalbasal PIN polar targeting directs auxin efflux. Science 306: 862-865.
22. Geldner, N., Anders, N., Wolters, H., Keicher, J., Kornberger, W., Muller, P., Delbarre, A., Ueda, T., Nakano, A., and Jurgens, G. (2003). The Arabidopsis GNOM ARF-GEF mediates endosomal recycling, auxin transport, and auxin-dependent plant growth. Cell 112: 219-230.
23. Golz, J.F., Roccaro, M., Kuzoff, R., and Hudson, A. (2004). GRAMINIFOLIA promotes growth and polarity of Antirrhinum leaves. Development 131: 3661-3670.
24. Hardtke, C.S., and Berleth, T. (1998). The Arabidopsis gene MONOPTEROS encodes a transcription factor mediating embryo axis formation and vascular development. EMBO J. 17: 1405-1411.
25. Hardtke, C.S., Ckurshumova, W., Vidaurre, D.P., Singh, S.A., Stamatiou, G., Tiwari, S.B., Hagen, G., Guilfoyle, T.J., and Berleth, T. (2004). Overlapping and non-redundant functions of the Arabidopsis auxin response factor MONOPTEROS and NONPHOTOTROPIC HYPOCOTYL 4. Development 131: 1089-1100.
26. Hawker, N.P., and Bowman, J.L. (2004). Roles for class IIIHD-Zip and KANADI genes in Arabidopsis root development. Plant Physiol. 135: 2261-2270.
27. Hay, A., Barkoulas, M., and Tsiantis, M. (2004). PINning down the connections: Transcription factors and hormones in leaf morphogenesis. Curr. Opin. Plant Biol. 7: 575-581.
28. Hay, A., Barkoulas, M., and Tsiantis, M. (2006). ASYMMETRIC LEAVES1 and auxin activities converge to repress BREVIPEDICELLUS expression and promote leaf development in Arabidopsis. Development 133: 3955-3961.
29. Heisler, M.G., Ohno, C., Das, P., Sieber, P., Reddy, G.V., Long, J.A., and Meyerowitz, E.M. (2005). Patterns of auxin transport and gene expression during primordium development revealed by live imaging of the Arabidopsis inflorescence meristem. Curr. Biol. 15: 1899-1911.
30. Hung, C.Y., Lin, Y., Zhang, M., Pollock, S., Marks, M.D., and Schiefelbein, J. (1998). A common position-dependent mechanism controls cell-type patterning and GLABRA2 regulation in the root and hypocotyl epidermis of Arabidopsis. Plant Physiol. 117: 73-84.
31. Jenik, P.D., and Barton, M.K. (2005). Surge and destroy: the role of auxin in plant embryogenesis. Development 132: 3577-3585.
32. Kerstetter, R.A., Bollman, K., Taylor, R.A., Bomblies, K., and Poethig, R.S. (2001). KANADI regulates organ polarity in Arabidopsis. Nature 411: 706-709.
33. Kumaran, M.K., Bowman, J.L., and Sundaresan, V. (2002). YABBY polarity genes mediate the repression of KNOX homeobox genes in Arabidopsis. Plant Cell 14: 2761-2770.
34. Liu, C.M., and Meinke, D.W. (1998). The titan mutants of Arabidopsis are disrupted in mitosis and cell cycle control during seed development. Plant J. 16: 21-31.
35. Long, J.A., and Barton, M.K. (1998). The development of apical embryonic pattern in Arabidopsis. Development 125: 3027-3035.
36. Mcabee, J.M., Hill, T.A., Skinner, D.J., Izhaki, A., Hauser, B.A., Meister, R.J., Reddy, G.V., Meyerowitz, E.M., Bowman, J.L., and Gasser, C.S. (2006). ABERRANT TESTA SHAPE encodes a KANADI family member, linking polarity determination to separation and growth of Arabidopsis ovule integuments. Plant J. 46: 522-531.
37. McConnell, J.R., and Barton, M.K. (1998). Leaf polarity and meristem formation in Arabidopsis. Development 125: 2935-2942.
38. McConnell, J.R., Emery, J., Eshed, Y., Bao, N., Bowman, J., and Barton, M.K. (2001). Role of PHABULOSA and PHAVOLUTA in determining radial patterning in shoots. Nature 411: 709-713.
39. Ohashi-Ito, K., Kubo, M., Demura, T., and Fukuda, H. (2005). Class III homeodomain leucine-zipper proteins regulate xylem cell differentiation. Plant Cell Physiol. 46: 1646-1656.
40. Otsuga, D., DeGuzman, B., Prigge, M.J., Drews, G.N., and Clark, S.E. (2001). REVOLUTA regulates meristem initiation at lateral positions. Plant J. 25: 223-236.
41. Paciorek, T., Zazimalova, E., Ruthardt, N., Petrasek, J., Stierhof, Y.-D., Kleine-Vehn, J., Morris, D.A., Emans, N., Jurgens, G., Geldner, N., and Friml, J. (2005). Auxin inhibits endocytosis and promotes its own efflux from cells. Nature 435: 1251-1256.
42. Pekker, I., Alvarez, J.P., and Eshed, Y. (2005). Auxin response factors mediate Arabidopsis organ asymmetry via modulation of KANADI activity. Plant Cell 17: 2899-2910.
43. Prigge, M.J., Otsuga, D., Alonso, J.M., Ecker, J.R., Drews, G.N., and Clark, S.E. (2005). Class III homeodomain-leucine zipper gene family members have overlapping, antagonistic, and distinct roles in Arabidopsis development. Plant Cell 17: 61-76.
44. Reinhardt, D., Mandel, T., and Kuhlemeier, C. (2000). Auxin regulates the initiation and radial position of plant lateral organs. Plant Cell 12: 507-518.
45. Reinhardt, D., Pesce, E.R., Stieger, P., Mandel, T., Baltensperger, K., Bennett, M., Traas, J., Friml, J., and Kuhlemeier, C. (2003). Regulation of phyllotaxis by polar auxin transport. Nature 426: 255-260.
46. Sauer, M., Balla, J., Luschnig, C., Wisniewska, J., Reinohl, V., Friml, J., and Benkova, E. (2006). Canalization of auxin flow by Aux/IAA-ARF-dependent feedback regulation of PIN polarity. Genes Dev. 20: 2902-2911.
47. Sawa, S., Watanabe, K., Goto, K., Kanaya, E., Morita, E.H., and Okada, K. (1999). FILAMENTOUS FLOWER, a meristem and organ identity gene of Arabidopsis, encodes a protein with a zinc finger and HMG-related domains. Genes Dev. 13: 1079-1088.
48. Scarpella, E., Marcos, D., Friml, J., and Berleth, T. (2006). Control of leaf vascular patterning by polar auxin transport. Genes Dev. 20: 1015-1027.
49. Schrader, J., Baba, K., May, S.T., Palme, K., Bennett, M., Bhalerao, R.P., and Sandberg, G. (2003). Polar auxin transport in the wood-forming tissues of hybrid aspen is under simultaneous control of developmental and environmental signals. Proc. Natl. Acad. Sci. USA 100: 10096-10101.
50. Sieberer, T., Seifert, G.J., Hauser, M.-T., Grisafi, P., Fink, G.R., and Luschnig, C. (2000). Post-transcriptional control of the Arabidopsis auxin efflux carrier EIR1 requires AXR1. Curr. Biol. 10: 1595-1598.
51. Siegfried, K.R., Eshed, Y., Baum, S.F., Otsuga, D., Drews, G.N., and Bowman, J.L. (1999). Members of the YABBY gene family specify abaxial cell fate in Arabidopsis. Development 126: 4117-4128.
52. Smith, R.S., Guyomarc'h, S., Mandel, T., Reinhardt, D., Kuhlemeier, C., and Prusinkiewicz, P. (2006). A plausible model of phyllotaxis. Proc. Natl. Acad. Sci. USA 103: 1301-1306.
53. Steinmann, T., Geldner, N., Grebe, M., Mangold, S., Jackson, C.L., Paris, S., Galweiler, L., Palme, K., and Jurgens, G. (1999). Coordinated polar localization of auxin efflux carrier PIN1 by GNOM ARF GEF. Science 286: 316-318.
54. Till, B.J., et al. (2003). Large-scale discovery of induced point mutations with high-throughput TILLING. Genome Res. 13: 524-530.
55. Tiwari, S.B., Hagen, G., and Guilfoyle, T. (2003). The roles of auxin response factor domains in auxin-responsive transcription. Plant Cell 15: 533-543.
56. Vieten, A., Vanneste, S., Wisniewska, J., Benkova, E., Benjamins, R., Beeckman, T., Luschnig, C., and Friml, J. (2005). Functional redundancy of PIN proteins is accompanied by auxin-dependent cross-regulation of PIN expression. Development 132: 4521-4531.