Erratum: Auxin-mediated ribosomal biogenesis regulates vacuolar trafficking in Arabidopsis (Plant Cell (2010) 22 (143-158) DOI: 10.1105/tpc.109.068320);Auxin-mediated ribosomal biogenesis regulates vacuolar trafficking in Arabidopsis

Plant Cell

Volumn 22, Issue 1, 2010, Pages 143-158

  Rosado, Abel ^a   Sohn, Eun Ju ^a,d   Drakakaki, Georgia ^a   Pan, Songqin ^a   Swidergal, Alexandra ^a   Xiong, Yuqing ^b   Kang, Byung Ho ^b   Bressan, Ray A ^c   Raikhela, Natasha V ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF FLORIDA   (United States)

^c PURDUE UNIVERSITY   (United States)

^d Pohang University of Science and Technology (POSTECH)   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 77950343659     PISSN: 10404651     EISSN: 1532298X     Source Type: Journal    
DOI: 10.1093/plcell/koab097     Document Type: Erratum

References (58)

1. Ahmed, S., Rojo, E., Kovaleva, V., Venkataraman, S., Dombrowski, J., Matsuoka, K., and Raikhel, N. (2000). The plant vacuolar sorting receptor AtELP is involved in transport of NH(2)-terminal propeptide-containing vacuolar proteins in Arabidopsis thaliana. J. Cell Biol. 149: 1335-1344.
2. Baerenfaller, K., Grossmann, J., Grobei, M., Hull, R., Hirsch-Hoffmann, M., Yalovsky, S., Zimmermann, P., Grossniklaus, U., Gruissem, W., and Baginsky, S. (2008). Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics. Science 320: 938-941.
3. Ban, N., Nissen, P., Hansen, J., Moore, P., and Steitz, T. (2000). The complete atomic structure of the large ribosomal subunit at 2.4 A resolution. Science 289: 905-920.
4. Barakat, A., Szick-Miranda, K., Chang, I., Guyot, R., Blanc, G., Cooke, R., Delseny, M., and Bailey-Serres, J. (2001). The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome. Plant Physiol. 127: 398-415.
5. Bassham, D., and Raikhel, N. (2000). Unique features of the plant vacuolar sorting machinery. Curr. Opin. Cell Biol. 12: 491-495.
6. Carroll, A., Heazlewood, J., Ito, J., and Millar, A. (2008). Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed in-sights into its components and their post-translational modification. Mol. Cell. Proteomics 7: 347-369.
7. Carter, C., Pan, S., Zouhar, J., Avila, E., Girke, T., and Raikhel, N. (2004). The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Plant Cell 16: 3285-3303.
8. Chang, I., Szick-Miranda, K., Pan, S., and Bailey-Serres, J. (2005). Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes. Plant Physiol. 137: 848-862.
9. Craddock, C., Hunter, P., Szakacs, E., Hinz, G., Robinson, D., and Frigerio, L. (2008). Lack of a vacuolar sorting receptor leads to non-specific missorting of soluble vacuolar proteins in Arabidopsis seeds. Traffic 9: 408-416.
10. Curtis, M., and Grossniklaus, U. (2003). A gateway cloning vector set for high-throughput functional analysis of genes in planta. Plant Physiol. 133: 462-469.
11. Degenhardt, R., and Bonham-Smith, P. (2008). Arabidopsis ribosomal proteins RPL23aA and RPL23aB are differentially targeted to the nucleolus and are desperately required for normal development. Plant Physiol. 147: 128-142.
12. Gälweiler, L., Guan, C., Müller, A., Wisman, E., Mendgen, K., Yephremov, A., and Palme, K. (1998). Regulation of polar auxin transport by AtPIN1 in Arabidopsis vascular tissue. Science 282: 2226-2230.
13. Giavalisco, P., Wilson, D., Kreitler, T., Lehrach, H., Klose, J., Gobom, J., and Fucini, P. (2005). High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. Plant Mol. Biol. 57: 577-591.
14. Goh, T., Uchida, W., Arakawa, S., Ito, E., Dainobu, T., Ebine, K., Takeuchi, M., Sato, K., Ueda, T., and Nakano, A. (2007). VPS9a, the common activator for two distinct types of Rab5 GTPases, is essential for the development of Arabidopsis thaliana. Plant Cell 19: 3504-3515.
15. Hunter, P., Craddock, C., Di Benedetto, S., Roberts, L., and Frigerio, L. (2007). Fluorescent reporter proteins for the tonoplast and the vacuolar lumen identify a single vacuolar compartment in Arabidopsis cells. Plant Physiol. 145: 1371-1382.
16. Ito, T., Kim, G., and Shinozaki, K. (2000). Disruption of an Arabidopsis cytoplasmic ribosomal protein S13-homologous gene by transposonmediated mutagenesis causes aberrant growth and development. Plant J. 22: 257-264.
17. Jefferson, R., Kavanagh, T., and Bevan, M. (1987). GUS fusions: Beta-glucuronidase as a sensitive and versatile gene fusion marker in higher plants. EMBO J. 6: 3901-3907.
18. Jin, J., Kim, Y., Kim, S., Lee, S., Kim, D., Cheong, G., and Hwang, I. (2001). A new dynamin-like protein, ADL6, is involved in trafficking from the trans-Golgi network to the central vacuole in Arabidopsis. Plant Cell 13: 1511-1526.
19. Kleine-Vehn, J., Leitner, J., Zwiewka, M., Sauer, M., Abas, L., Luschnig, C., and Friml, J. (2008). Differential degradation of PIN2 auxin efflux carrier by retromer-dependent vacuolar targeting. Proc. Natl. Acad. Sci. USA 105: 17812-17817.
20. Kim, D., Eu, Y., Yoo, C., Kim, Y., Pih, K., Jin, J., Kim, S., Stenmark, H., and Hwang, I. (2001). Trafficking of phosphatidylinositol 3-phosphate from the trans-Golgi network to the lumen of the central vacuole in plant cells. Plant Cell 13: 287-301.
21. Koiwa, H., et al. (2002). C-terminal domain phosphatase-like family members (AtCPLs) differentially regulate Arabidopsis thaliana abiotic stress signaling, growth, and development. Proc. Natl. Acad. Sci. USA 99: 10893-10898.
22. Koiwa, H., Bressan, R., and Hasegawa, P. (2006). Identification of plant stress-responsive determinants in Arabidopsis by large-scale forward genetic screens. J. Exp. Bot. 57: 1119-1128.
23. Komili, S., Farny, N., Roth, F., and Silver, P. (2007). Functional specificity among ribosomal proteins regulates gene expression. Cell 131: 557-571.
24. Laxmi, A., Pan, J., Morsy, M., and Chen, R. (2008). Light plays an essential role in intracellular distribution of auxin efflux carrier PIN2 in Arabidopsis thaliana. PLoS One 3: e1510.
25. Liu, Y., Mitsukawa, N., Oosumi, T., and Whittier, R. (1995). Efficient isolation and mapping of Arabidopsis thaliana T-DNA insert junctions by thermal asymmetric interlaced PCR. Plant J. 8: 457-463.
26. Lee, M., Min, M., Lee, Y., Jin, J., Shin, D., Kim, D., Lee, K., and Hwang, I. (2002). ADP-ribosylation factor 1 of Arabidopsis plays a critical role in intracellular trafficking and maintenance of endoplasmic reticulum morphology in Arabidopsis. Plant Physiol. 129: 1507-1520.
27. Matsuoka, K., and Nakamura, K. (1999). Large alkyl side-chains of isoleucine and leucine in the NPIRL region constitute the core of the vacuolar sorting determinant of sporamin precursor. Plant Mol. Biol. 41: 825-835.
28. Miao, Y., Li, K., Li, H., Yao, X., and Jiang, L. (2008). The vacuolar transport of aleurain-GFP and 2S albumin-GFP fusions is mediated by the same pre-vacuolar compartments in tobacco BY-2 and Arabidopsis suspension cultured cells. Plant J. 56: 824-839.
29. Nishimura, T., Wada, T., Yamamoto, K., and Okada, K. (2005). The Arabidopsis STV1 protein, responsible for translation reinitiation, is required for auxin-mediated gynoecium patterning. Plant Cell 17: 2940-2953.
30. O'Connor, M., Gregory, S., and Dahlberg, A. (2004). Multiple defects in translation associated with altered ribosomal protein L4. Nucleic Acids Res. 32: 5750-5756.
31. Oleinick, N. (1977). Initiation and elongation of protein synthesis in growing cells: Differential inhibition by cycloheximide and emetine. Arch. Biochem. Biophys. 182: 171-180.
32. Paciorek, T., Zazímalová, E., Ruthardt, N., Petrásek, J., Stierhof, Y., Kleine-Vehn, J., Morris, D., Emans, N., Jürgens, G., Geldner, N., and Friml, J. (2005). Auxin inhibits endocytosis and promotes its own efflux from cells. Nature 435: 1251-1256.
33. Pan, J., Fujioka, S., Peng, J., Chen, J., Li, G., and Chen, R. (2009). The E3 ubiquitin ligase SCFTIR1/AFB and membrane sterols play key roles in auxin regulation of endocytosis, recycling, and plasma membrane accumulation of the auxin efflux transporter PIN2 in Arabidopsis thaliana. Plant Cell 21: 568-580.
34. Petricka, J., and Nelson, T. (2007). Arabidopsis nucleolin affects plant development and patterning. Plant Physiol. 144: 173-186.
35. Pfaffl, M. (2001). A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res. 29: e45.
36. Pinon, V., Etchells, J., Rossignol, P., Collier, S., Arroyo, J., Martienssen, R., and Byrne, M. (2008). Three PIGGYBACK genes that specifically influence leaf patterning encode ribosomal proteins. Development 135: 1315-1324.
37. Robinson, D., Oliviusson, P., and Hinz, G. (2005). Protein sorting to the storage vacuoles of plants: A critical appraisal. Traffic 6: 615-625.
38. Rojo, E., Martín, R., Carter, C., Zouhar, J., Pan, S., Plotnikova, J., Jin, H., Paneque, M., Sánchez-Serrano, J., Baker, B., Ausubel, F., and Raikhel, N. (2004). VPEgamma exhibits a caspase-like activity that contributes to defense against pathogens. Curr. Biol. 14: 1897-1906.
39. Rojo, E., Sharma, V., Kovaleva, V., Raikhel, N., and Fletcher, J. (2002). CLV3 is localized to the extracellular space, where it activates the Arabidopsis CLAVATA stem cell signaling pathway. Plant Cell 14: 969-977.
40. Sanderfoot, A., Kovaleva, V., Bassham, D., and Raikhel, N. (2001). Interactions between syntaxins identify at least five SNARE complexes within the Golgi/prevacuolar system of the Arabidopsis cell. Mol. Biol. Cell 12: 3733-3743.
41. Sanderfoot, A., Kovaleva, V., Zheng, H., and Raikhel, N. (1999). The t-SNARE AtVAM3p resides on the prevacuolar compartment in Arabidopsis root cells. Plant Physiol. 121: 929-938.
42. Sanmartín, M., Ordóñez, A., Sohn, E., Robert, S., Sánchez-Serrano, J., Surpin, M., Raikhel, N., and Rojo, E. (2007). Divergent functions of VTI12 and VTI11 in trafficking to storage and lytic vacuoles in Arabidopsis. Proc. Natl. Acad. Sci. USA 104: 3645-3650.
43. Sato, M., Nakamura, N., Ohsumi, Y., Kouchi, H., Kondo, M., Hara-Nishimura, I., Nishimura, M., and Wada, Y. (1997). The AtVAM3 encodes a syntaxin-related molecule implicated in the vacuolar assembly in Arabidopsis thaliana. J. Biol. Chem. 272: 24530-24535.
44. Shirakawa, M., Ueda, H., Shimada, T., Nishiyama, C., and Hara-Nishimura, I. (2009). Vacuolar SNAREs function in the formation of the leaf vascular network by regulating auxin distribution. Plant Cell Physiol. 50: 1319-1328.
45. Sohn, E., Kim, E., Zhao, M., Kim, S., Kim, H., Kim, Y., Lee, Y., Hillmer, S., Sohn, U., Jiang, L., and Hwang, I. (2003). Rha1, an Arabidopsis Rab5 homolog, plays a critical role in the vacuolar trafficking of soluble cargo proteins. Plant Cell 15: 1057-1070.
46. Sohn, E., Rojas-Pierce, M., Pan, S., Carter, C., Serrano-Mislata, A., Madueño, F., Rojo, E., Surpin, M., and Raikhel, N. (2007). The shoot meristem identity gene TFL1 is involved in flower development and trafficking to the protein storage vacuole. Proc. Natl. Acad. Sci. USA 104: 18801-18806.
47. Spitzer, C., Reyes, F., Buono, R., Sliwinski, M., Haas, T., and Otegui, M. (2009). The ESCRT-related CHMP1A and B proteins mediate multivesicular body sorting of auxin carriers in Arabidopsis and are required for plant development. Plant Cell 21: 749-766.
48. Surpin, M., and Raikhel, N. (2004). Traffic jams affect plant development and signal transduction. Nat. Rev. Mol. Cell Biol. 5: 100-109.
49. Teale, W., Paponov, I., and Palme, K. (2006). Auxin in action: Signal-ling, transport and the control of plant growth and development. Nat. Rev. Mol. Cell Biol. 7: 847-859.
50. Ulmasov, T., Murfett, J., Hagen, G., and Guilfoyle, T. (1997). Aux/IAA proteins repress expression of reporter genes containing natural and highly active synthetic auxin response elements. Plant Cell 9: 1963-1971.
51. Van Lijsebettens, M., Vanderhaeghen, R., De Block, M., Bauw, G., Villarroel, R., and Van Montagu, M. (1994). An S18 ribosomal protein gene copy at the Arabidopsis PFL locus affects plant development by its specific expression in meristems. EMBO J. 13: 3378-3388.
52. Vitale, A., and Raikhel, N. (1999). What do proteins need to reach different vacuoles? Trends Plant Sci. 4: 149-155.
53. Volarevic, S., Stewart, M., Ledermann, B., Zilberman, F., Terracciano, L., Montini, E., Grompe, M., Kozma, S., and Thomas, G. (2000). Proliferation, but not growth, blocked by conditional deletion of 40S ribosomal protein S6. Science 288: 2045-2047.
54. Weijers, D., Franke-van Dijk, M., Vencken, R., Quint, A., Hooykaas, P., and Offringa, R. (2001). An Arabidopsis Minute-like phenotype caused by a semi-dominant mutation in a RIBOSOMAL PROTEIN S5 gene. Development 128: 4289-4299.
55. Wool, I. (1996). Extraribosomal functions of ribosomal proteins. Trends Biochem. Sci. 21: 164-165.
56. Yao, Y., Ling, Q., Wang, H., and Huang, H. (2008). Ribosomal proteins promote leaf adaxial identity. Development 135: 1325-1334.
57. Zheng, H., von Mollard, G., Kovaleva, V., Stevens, T., and Raikhel, N. (1999). The plant vesicle-associated SNARE AtVTI1a likely mediates vesicle transport from the trans-Golgi network to the prevacuolar compartment. Mol. Biol. Cell 10: 2251-2264.
58. Zouhar, J., Rojo, E., and Bassham, D. (2009). AtVPS45 is a positive regulator of the SYP41/SYP61/VTI12 SNARE complex involved in trafficking of vacuolar cargo. Plant Physiol. 149: 1668-1678.