-
2
-
-
34547726221
-
Contribution of horizontally acquired genomic islands to the evolution of the tubercle bacilli
-
Becq J., et al. Contribution of horizontally acquired genomic islands to the evolution of the tubercle bacilli. Mol. Biol. Evol. 2007, 24:1861-1871.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1861-1871
-
-
Becq, J.1
-
3
-
-
15444350252
-
The complete genome sequence of Escherichia coli K-12
-
Blattner F.R., et al. The complete genome sequence of Escherichia coli K-12. Science 1997, 277:1453-1462.
-
(1997)
Science
, vol.277
, pp. 1453-1462
-
-
Blattner, F.R.1
-
4
-
-
1542395706
-
Comparative analysis of the complete cag pathogenicity island sequence in four Helicobacter pylori isolates
-
Blomstergren A., Lundin A., Nilsson C., Engstrand L., Lundeberg J. Comparative analysis of the complete cag pathogenicity island sequence in four Helicobacter pylori isolates. Gene 2004, 328:85-93.
-
(2004)
Gene
, vol.328
, pp. 85-93
-
-
Blomstergren, A.1
Lundin, A.2
Nilsson, C.3
Engstrand, L.4
Lundeberg, J.5
-
5
-
-
77950195231
-
Horizontal gene transfer in evolution: facts and challenges
-
Boto L. Horizontal gene transfer in evolution: facts and challenges. Proc. R. Soc. Biol. 2010, 277:819-827.
-
(2010)
Proc. R. Soc. Biol.
, vol.277
, pp. 819-827
-
-
Boto, L.1
-
6
-
-
60349117754
-
Genomic islands are dynamic, ancient integrative elements in bacterial evolution
-
Boyd E.F., Almagro-Moreno S., Parent M.A. Genomic islands are dynamic, ancient integrative elements in bacterial evolution. Trends Microbiol. 2009, 17:47-53.
-
(2009)
Trends Microbiol.
, vol.17
, pp. 47-53
-
-
Boyd, E.F.1
Almagro-Moreno, S.2
Parent, M.A.3
-
9
-
-
44249091644
-
Termination factor Rho and its cofactors NusA and NusG silence foreign DNA in E. coli
-
Cardinale C.J., Washburn R.S., Tadigotla V.R., Brown L.M., Gottesman M.E., Nudler E. Termination factor Rho and its cofactors NusA and NusG silence foreign DNA in E. coli. Science 2008, 320:935-938.
-
(2008)
Science
, vol.320
, pp. 935-938
-
-
Cardinale, C.J.1
Washburn, R.S.2
Tadigotla, V.R.3
Brown, L.M.4
Gottesman, M.E.5
Nudler, E.6
-
10
-
-
0037825641
-
Prophages and bacterial genomics: what have we learned so far?
-
Casjens S. Prophages and bacterial genomics: what have we learned so far?. Mol. Microbiol. 2003, 49:277-300.
-
(2003)
Mol. Microbiol.
, vol.49
, pp. 277-300
-
-
Casjens, S.1
-
11
-
-
10744229660
-
The complete genome sequence and analysis of Corynebacterium diphtheriae NCTC13129
-
Cerdeno-Tarraga A.M., et al. The complete genome sequence and analysis of Corynebacterium diphtheriae NCTC13129. Nucleic Acids Res. 2003, 31:6516-6523.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 6516-6523
-
-
Cerdeno-Tarraga, A.M.1
-
12
-
-
33748767376
-
Rho-dependent terminators and transcription termination
-
Ciampi M.S. Rho-dependent terminators and transcription termination. Microbiology 2006, 152:2515-2528.
-
(2006)
Microbiology
, vol.152
, pp. 2515-2528
-
-
Ciampi, M.S.1
-
13
-
-
55449129670
-
Prediction of transcriptional terminators in Bacillus subtilis and related species
-
de Hoon M.J., Makita Y., Nakai K., Miyano S. Prediction of transcriptional terminators in Bacillus subtilis and related species. PLoS Comput. Biol. 2005, 1:e25.
-
(2005)
PLoS Comput. Biol.
, vol.1
-
-
de Hoon, M.J.1
Makita, Y.2
Nakai, K.3
Miyano, S.4
-
14
-
-
50649101517
-
Transcription termination factor Rho prefers catalytically active elongation complexes for releasing RNA
-
Dutta D., Chalissery J., Sen R. Transcription termination factor Rho prefers catalytically active elongation complexes for releasing RNA. J. Biol. Chem. 2008, 283:20243-20251.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 20243-20251
-
-
Dutta, D.1
Chalissery, J.2
Sen, R.3
-
15
-
-
37349115934
-
An allosteric path to transcription termination
-
Epshtein V., Cardinale C.J., Ruckenstein A.E., Borukhov S., Nudler E. An allosteric path to transcription termination. Mol. Cell 2007, 28:991-1001.
-
(2007)
Mol. Cell
, vol.28
, pp. 991-1001
-
-
Epshtein, V.1
Cardinale, C.J.2
Ruckenstein, A.E.3
Borukhov, S.4
Nudler, E.5
-
16
-
-
74549191169
-
An allosteric mechanism of Rho-dependent transcription termination
-
Epshtein V., Dutta D., Wade J., Nudler E. An allosteric mechanism of Rho-dependent transcription termination. Nature 2010, 463:245-249.
-
(2010)
Nature
, vol.463
, pp. 245-249
-
-
Epshtein, V.1
Dutta, D.2
Wade, J.3
Nudler, E.4
-
17
-
-
0025303975
-
Structural and functional properties of the segments of lambda cro mRNA that interact with transcription termination factor Rho
-
Faus I., Richardson J.P. Structural and functional properties of the segments of lambda cro mRNA that interact with transcription termination factor Rho. J. Mol. Biol. 1990, 212:53-66.
-
(1990)
J. Mol. Biol.
, vol.212
, pp. 53-66
-
-
Faus, I.1
Richardson, J.P.2
-
18
-
-
77950419841
-
Lsr2 is a nucleoid-associated protein that targets AT-rich sequences and virulence genes in Mycobacterium tuberculosis
-
Gordon B.R., et al. Lsr2 is a nucleoid-associated protein that targets AT-rich sequences and virulence genes in Mycobacterium tuberculosis. Proc. Natl. Acad. Sci. U. S. A. 2010, 107:5154-5159.
-
(2010)
Proc. Natl. Acad. Sci. U. S. A.
, vol.107
, pp. 5154-5159
-
-
Gordon, B.R.1
-
19
-
-
7644223774
-
Why is transcription coupled to translation in bacteria?
-
Gowrishankar J., Harinarayanan R. Why is transcription coupled to translation in bacteria?. Mol. Microbiol. 2004, 54:598-603.
-
(2004)
Mol. Microbiol.
, vol.54
, pp. 598-603
-
-
Gowrishankar, J.1
Harinarayanan, R.2
-
20
-
-
0031053290
-
Analysis of the boundaries of salmonella pathogenicity island 2 and the corresponding chromosomal region of Escherichia coli K-12
-
Hensel Micheal, J.E.S., Baumler Andreas J., Gleeson Colin, Blattner Fredrick, Holden David W. Analysis of the boundaries of salmonella pathogenicity island 2 and the corresponding chromosomal region of Escherichia coli K-12. J. Bacteriol. 1997, 179:1105-1111.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 1105-1111
-
-
Hensel, M.J.E.S.1
Baumler, A.J.2
Gleeson, C.3
Blattner, F.4
Holden, D.W.5
-
21
-
-
58149498183
-
Complete genome sequence and comparative genome analysis of enteropathogenic Escherichia coli O127:H6 strain E2348/69
-
Iguchi A., et al. Complete genome sequence and comparative genome analysis of enteropathogenic Escherichia coli O127:H6 strain E2348/69. J. Bacteriol. 2009, 191:347-354.
-
(2009)
J. Bacteriol.
, vol.191
, pp. 347-354
-
-
Iguchi, A.1
-
22
-
-
0032904686
-
Autogenous regulation of transcription termination factor Rho and the requirement for Nus factors in Bacillus subtilis
-
Ingham C.J., Dennis J., Furneaux P.A. Autogenous regulation of transcription termination factor Rho and the requirement for Nus factors in Bacillus subtilis. Mol. Microbiol. 1999, 31:651-663.
-
(1999)
Mol. Microbiol.
, vol.31
, pp. 651-663
-
-
Ingham, C.J.1
Dennis, J.2
Furneaux, P.A.3
-
23
-
-
60149088444
-
Genomic islands: tools of bacterial horizontal gene transfer and evolution
-
Juhas M., van der Meer J.R., Gaillard M., Harding R.M., Hood D.W., Crook D.W. Genomic islands: tools of bacterial horizontal gene transfer and evolution. FEMS Microbiol. Rev. 2009, 33:376-393.
-
(2009)
FEMS Microbiol. Rev.
, vol.33
, pp. 376-393
-
-
Juhas, M.1
van der Meer, J.R.2
Gaillard, M.3
Harding, R.M.4
Hood, D.W.5
Crook, D.W.6
-
24
-
-
73649086853
-
A bacterial transcription terminator with inefficient molecular motor action but with a robust transcription termination function
-
Kalarickal N.C., Ranjan A., Kalyani B.S., Wal M., Sen R. A bacterial transcription terminator with inefficient molecular motor action but with a robust transcription termination function. J. Mol. Biol. 2009, 395:966-982.
-
(2009)
J. Mol. Biol.
, vol.395
, pp. 966-982
-
-
Kalarickal, N.C.1
Ranjan, A.2
Kalyani, B.S.3
Wal, M.4
Sen, R.5
-
25
-
-
68549135026
-
Genomic island excisions in Bordetella petrii
-
Lechner M., et al. Genomic island excisions in Bordetella petrii. BMC Microbiol. 2009, 9:141.
-
(2009)
BMC Microbiol.
, vol.9
, pp. 141
-
-
Lechner, M.1
-
26
-
-
34247601641
-
Defining genomic islands and uropathogen-specific genes in uropathogenic Escherichia coli
-
Lloyd A.L., Rasko D.A., Mobley H.L. Defining genomic islands and uropathogen-specific genes in uropathogenic Escherichia coli. J. Bacteriol. 2007, 189:3532-3546.
-
(2007)
J. Bacteriol.
, vol.189
, pp. 3532-3546
-
-
Lloyd, A.L.1
Rasko, D.A.2
Mobley, H.L.3
-
27
-
-
66149083657
-
Genomic islands of uropathogenic Escherichia coli contribute to virulence
-
Lloyd A.L., Henderson T.A., Vigil P.D., Mobley H.L. Genomic islands of uropathogenic Escherichia coli contribute to virulence. J. Bacteriol. 2009, 191:3469-3481.
-
(2009)
J. Bacteriol.
, vol.191
, pp. 3469-3481
-
-
Lloyd, A.L.1
Henderson, T.A.2
Vigil, P.D.3
Mobley, H.L.4
-
28
-
-
0035675991
-
The salmonella pathogenicity island-1 type III secretion system
-
Lostroh C.P., Lee C.A. The salmonella pathogenicity island-1 type III secretion system. Microbes Infect. 2001, 3:1281-1291.
-
(2001)
Microbes Infect.
, vol.3
, pp. 1281-1291
-
-
Lostroh, C.P.1
Lee, C.A.2
-
29
-
-
58149200939
-
DOOR: a database for prokaryotic operons
-
Mao F., Dam P., Chou J., Olman V., Xu Y. DOOR: a database for prokaryotic operons. Nucleic Acids Res. 2009, 37:D459-D463.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Mao, F.1
Dam, P.2
Chou, J.3
Olman, V.4
Xu, Y.5
-
30
-
-
67649976624
-
Occurrence, divergence and evolution of intrinsic terminators across eubacteria
-
Mitra A., Angamuthu K., Jayashree H.V., Nagaraja V. Occurrence, divergence and evolution of intrinsic terminators across eubacteria. Genomics 2009, 94:110-116.
-
(2009)
Genomics
, vol.94
, pp. 110-116
-
-
Mitra, A.1
Angamuthu, K.2
Jayashree, H.V.3
Nagaraja, V.4
-
32
-
-
3042849253
-
Biased biological functions of horizontally transferred genes in prokaryotic genomes
-
Nakamura Y., Itoh T., Matsuda H., Gojobori T. Biased biological functions of horizontally transferred genes in prokaryotic genomes. Nat. Genet. 2004, 36:760-766.
-
(2004)
Nat. Genet.
, vol.36
, pp. 760-766
-
-
Nakamura, Y.1
Itoh, T.2
Matsuda, H.3
Gojobori, T.4
-
33
-
-
33746008173
-
Selective silencing of foreign DNA with low GC content by the H-NS protein in Salmonella
-
Navarre W.W., et al. Selective silencing of foreign DNA with low GC content by the H-NS protein in Salmonella. Science 2006, 313:236-238.
-
(2006)
Science
, vol.313
, pp. 236-238
-
-
Navarre, W.W.1
-
34
-
-
34250724903
-
Silencing of xenogeneic DNA by H-NS-facilitation of lateral gene transfer in bacteria by a defense system that recognizes foreign DNA
-
Navarre W.W., McClelland M., Libby S.J., Fang F.C. Silencing of xenogeneic DNA by H-NS-facilitation of lateral gene transfer in bacteria by a defense system that recognizes foreign DNA. Genes Dev. 2007, 21:1456-1471.
-
(2007)
Genes Dev.
, vol.21
, pp. 1456-1471
-
-
Navarre, W.W.1
McClelland, M.2
Libby, S.J.3
Fang, F.C.4
-
35
-
-
0030755556
-
Transcription termination factor Rho is essential for Micrococcus luteus
-
Nowatzke W.L., Keller E., Koch G., Richardson J.P. Transcription termination factor Rho is essential for Micrococcus luteus. J. Bacteriol. 1997, 179:5238-5240.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 5238-5240
-
-
Nowatzke, W.L.1
Keller, E.2
Koch, G.3
Richardson, J.P.4
-
36
-
-
0034682335
-
Lateral gene transfer and the nature of bacterial innovation
-
Ochman H., Lawrence J.G., Groisman E.A. Lateral gene transfer and the nature of bacterial innovation. Nature 2000, 405:299-304.
-
(2000)
Nature
, vol.405
, pp. 299-304
-
-
Ochman, H.1
Lawrence, J.G.2
Groisman, E.A.3
-
37
-
-
70349328557
-
Rho directs widespread termination of intragenic and stable RNA transcription
-
Peters J.M., Mooney R.A., Kuan P.F., Rowland J.L., Keles S., Landick R. Rho directs widespread termination of intragenic and stable RNA transcription. Proc. Natl. Acad. Sci. U. S. A. 2009, 106:15406-15411.
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 15406-15411
-
-
Peters, J.M.1
Mooney, R.A.2
Kuan, P.F.3
Rowland, J.L.4
Keles, S.5
Landick, R.6
-
38
-
-
79960395328
-
Bacterial transcription terminators: the RNA 3'-end chronicles
-
Peters J.M., Vangeloff A.D., Landick R. Bacterial transcription terminators: the RNA 3'-end chronicles. J. Mol. Biol. 2011, 412:793-813.
-
(2011)
J. Mol. Biol.
, vol.412
, pp. 793-813
-
-
Peters, J.M.1
Vangeloff, A.D.2
Landick, R.3
-
39
-
-
0037073063
-
Rho-dependent termination and ATPases in transcript termination
-
Richardson J.P. Rho-dependent termination and ATPases in transcript termination. Biochim. Biophys. Acta 2002, 1577:251-260.
-
(2002)
Biochim. Biophys. Acta
, vol.1577
, pp. 251-260
-
-
Richardson, J.P.1
-
40
-
-
0041696782
-
Loading Rho to terminate transcription
-
Richardson J.P. Loading Rho to terminate transcription. Cell 2003, 114:157-159.
-
(2003)
Cell
, vol.114
, pp. 157-159
-
-
Richardson, J.P.1
-
41
-
-
33745224521
-
How Rho exerts its muscle on RNA
-
Richardson J.P. How Rho exerts its muscle on RNA. Mol. Cell 2006, 22:711-712.
-
(2006)
Mol. Cell
, vol.22
, pp. 711-712
-
-
Richardson, J.P.1
-
42
-
-
0000882465
-
Control of RNA chain elongation and termination
-
ASM Press, Washington, D.C. F. Neidhert, F. Neidhert (Eds.)
-
Richardson J.P., Greenblatt J. Control of RNA chain elongation and termination. Escherichia coli and Salmonella: Cellular and Molecular Biology 1996, 822-848. ASM Press, Washington, D.C. F. Neidhert, F. Neidhert (Eds.).
-
(1996)
Escherichia coli and Salmonella: Cellular and Molecular Biology
, pp. 822-848
-
-
Richardson, J.P.1
Greenblatt, J.2
-
43
-
-
0029831394
-
Rho-dependent termination of transcription is governed primarily by the upstream Rho utilization (rut) sequences of a terminator
-
Richardson L.V., Richardson J.P. Rho-dependent termination of transcription is governed primarily by the upstream Rho utilization (rut) sequences of a terminator. J. Biol. Chem. 1996, 271:21597-21603.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 21597-21603
-
-
Richardson, L.V.1
Richardson, J.P.2
-
44
-
-
67650141987
-
Non mycobacterial virulence genes in the genome of the emerging pathogen Mycobacterium abscessus
-
Ripoll F., et al. Non mycobacterial virulence genes in the genome of the emerging pathogen Mycobacterium abscessus. PLoS One 2009, 4:e5660.
-
(2009)
PLoS One
, vol.4
-
-
Ripoll, F.1
-
45
-
-
33646855789
-
Horizontal transfer of a virulence operon to the ancestor of Mycobacterium tuberculosis
-
Rosas-Magallanes V., Deschavanne P., Quintana-Murci L., Brosch R., Gicquel B., Neyrolles O. Horizontal transfer of a virulence operon to the ancestor of Mycobacterium tuberculosis. Mol. Biol. Evol. 2006, 23:1129-1135.
-
(2006)
Mol. Biol. Evol.
, vol.23
, pp. 1129-1135
-
-
Rosas-Magallanes, V.1
Deschavanne, P.2
Quintana-Murci, L.3
Brosch, R.4
Gicquel, B.5
Neyrolles, O.6
-
46
-
-
79954597274
-
Termination and antitermination: RNA polymerase runs a stop sign
-
Santangelo T.J., Artsimovitch I. Termination and antitermination: RNA polymerase runs a stop sign. Nat. Rev. Microbiol. 2011, 9:319-329.
-
(2011)
Nat. Rev. Microbiol.
, vol.9
, pp. 319-329
-
-
Santangelo, T.J.1
Artsimovitch, I.2
-
47
-
-
0025017969
-
A short intervening structure can block Rho factor helicase action at a distance
-
Steinmetz E.J., Brennan C.A., Platt T. A short intervening structure can block Rho factor helicase action at a distance. J. Biol. Chem. 1990, 265:18408-18413.
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 18408-18413
-
-
Steinmetz, E.J.1
Brennan, C.A.2
Platt, T.3
-
48
-
-
0344413496
-
The flap domain is required for pause RNA hairpin inhibition of catalysis by RNA polymerase and can modulate intrinsic termination
-
Toulokhonov I., Landick R. The flap domain is required for pause RNA hairpin inhibition of catalysis by RNA polymerase and can modulate intrinsic termination. Mol. Cell 2003, 12:1125-1136.
-
(2003)
Mol. Cell
, vol.12
, pp. 1125-1136
-
-
Toulokhonov, I.1
Landick, R.2
-
49
-
-
0035957687
-
Allosteric control of RNA polymerase by a site that contacts nascent RNA hairpins
-
Toulokhonov I., Artsimovitch I., Landick R. Allosteric control of RNA polymerase by a site that contacts nascent RNA hairpins. Science 2001, 292:730-733.
-
(2001)
Science
, vol.292
, pp. 730-733
-
-
Toulokhonov, I.1
Artsimovitch, I.2
Landick, R.3
-
50
-
-
34547204502
-
A central role of the RNA polymerase trigger loop in active-site rearrangement during transcriptional pausing
-
Toulokhonov Innokenti, J.Z., Palangat Murali, Landick Robert A central role of the RNA polymerase trigger loop in active-site rearrangement during transcriptional pausing. Mol. Cell 2007, 27:406-419.
-
(2007)
Mol. Cell
, vol.27
, pp. 406-419
-
-
Toulokhonov, I.J.Z.1
Palangat, M.2
Landick, R.3
-
51
-
-
0036464509
-
Conserved economics of transcription termination in eubacteria
-
Unniraman S., Prakash R., Nagaraja V. Conserved economics of transcription termination in eubacteria. Nucleic Acids Res. 2002, 30:675-684.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 675-684
-
-
Unniraman, S.1
Prakash, R.2
Nagaraja, V.3
-
52
-
-
0032584643
-
An integrated model of the transcription complex in elongation, termination, and editing
-
von Hippel P.H. An integrated model of the transcription complex in elongation, termination, and editing. Science 1998, 281:660-665.
-
(1998)
Science
, vol.281
, pp. 660-665
-
-
von Hippel, P.H.1
-
53
-
-
0035077645
-
Rho is not essential for viability or virulence in Staphylococcus aureus
-
Washburn R.S., Marra A., Bryant A.P., Rosenberg M., Gentry D.R. Rho is not essential for viability or virulence in Staphylococcus aureus. Antimicrob. Agents Chemother. 2001, 45:1099-1103.
-
(2001)
Antimicrob. Agents Chemother.
, vol.45
, pp. 1099-1103
-
-
Washburn, R.S.1
Marra, A.2
Bryant, A.P.3
Rosenberg, M.4
Gentry, D.R.5
-
54
-
-
0347986769
-
Genome engineering reveals large dispensable regions in Bacillus subtilis
-
Westers H., et al. Genome engineering reveals large dispensable regions in Bacillus subtilis. Mol. Biol. Evol. 2003, 20:2076-2090.
-
(2003)
Mol. Biol. Evol.
, vol.20
, pp. 2076-2090
-
-
Westers, H.1
|