Analysis of the boundaries of Salmonella pathogenicity island 2 and the corresponding chromosomal region of Escherichia coli K-12

Journal of Bacteriology

Volumn 179, Issue 4, 1997, Pages 1105-1111

  Hensel, Michael ^a   Shea, Jacqueline E ^b   Bäumler, Andreas J ^c   Gleeson, Colin ^b   Blattner, Frederick ^d   Holden, David W ^b  

^a UNIVERSITY OF MUNICH   (Germany)

^b HAMMERSMITH HOSPITAL   (United Kingdom)

^c OREGON HEALTH AND SCIENCE UNIVERSITY   (United States)

^d UNIVERSITY OF WISCONSIN MADISON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL GENE; BACTERIAL VIRULENCE; CHROMOSOME; ESCHERICHIA COLI; GENE INSERTION; GENETIC ANALYSIS; NONHUMAN; POINT MUTATION; PRIORITY JOURNAL; SALMONELLA TYPHIMURIUM; STRAIN DIFFERENCE;

BACTERIA (MICROORGANISMS); ESCHERICHIA; ESCHERICHIA COLI; ESCHERICHIA COLI K12; SALMONELLA; SALMONELLA BONGORI; SALMONELLA TYPHIMURIUM; TYPHIMURIUM;

EID: 0031053290     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/jb.179.4.1105-1111.1997     Document Type: Article

References (41)

1. Ausubet, F. M., R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith, and K. Strahl. 1987. Current protocols in molecular biology. John Wiley & Sons, Inc., New York, N.Y.
2. Barrett, E. L., and M. A. Clark. 1987. Tetrathionate reduction and production of hydrogen sulphide from thiosulfate. Microbiol. Rev. 51:192-205.
3. Benson, N. R., and B. S. Goldman. 1992. Rapid mapping in Salmonella typhimurium with Mud-P22 prophages. J. Bacteriol. 174:1673-1681.
4. Bergman, T., K. Erickson, E. Galyov, C. Persson, and H. Wolf-Watz. 1994. The lcrB (yscN/U) gene cluster of Yersinia pseudotuberculosis is involved in Yop secretion and shows high homology to the spa gene clusters of Shigella flexneri and Salmonella typhimurium. J. Bacteriol. 176:2619-2626.
5. Bloch, C. A., C. K. Rode, V. H. Obreque, and J. Mahillon. 1996. Purification of Escherichia coli chromosomal segments without cloning. Biochem. Biophys. Res. Commun. 223:104-111.
6. Blum, G., M. Ott, A. Lischewski, A. Ritter, H. Imrich, H. Tschape, and J. Hacker. 1994. Excision of large DNA regions termed pathogenicity islands from tRNA-specific loci in the chromosome of an Escherichia coli wild-type pathogen. Infect. Immun. 62:606-614.
7. Borodovsky, M., and J. McIninch. 1993. GenMark: parallel gene recognition for both DNA strands. Comput. Chem. 17:123-133.
8. Boyd, E. F., F. S. Wang, P. Beltran, S. A. Plock, K. Nelson, and R. K. Selander. 1993. Salmonella reference collection B (SARB): strains of 37 serovars of subspecies I. J. Gen. Microbiol. 139:1125-1132.
9. Boyd, E. F., F. S. Wang, T. S. Whittam, and R. K. Selander. 1996. Molecular genetic relationships of the salmonellae. Appl. Environ. Microbiol. 62:804-808.
10. Burland, V. A., D. L. Daniels, G. Plunkett, and F. R. Blattner. 1993. DNA sequencing on both strands: the Janus strategy. Nucleic Acids Res. 21:3385-3390.
11. Cheetham, B. F., and M. E. Katz. 1995. A role for bacteriophages in the evolution and transfer of bacterial virulence determinants. Mol. Microbiol. 18:201-208.
12. Cheetham, B. F., D. B. Tattersall, G. A. Bloomfield, J. I. Rood, and M. E. Katz. 1995. Identification of a gene encoding a bacteriophage-related integrase in a vap region of the Dichelobacter nodosus genome. Gene 162:53-58.
13. Cornelis, G. 1994. Yersinia pathogenicity factors. Curr. Top. Microbiol. Immunol. 192:243-263.
14. Devereux, J., P. Haeberli, and O. Smithies. 1984. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 12:387-395.
15. Falkow, S. 1996. The evolution of pathogenicity in Escherichia, Shigella, and Salmonella, p. 2723-2728. In F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, Jr., B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed. ASM Press, Washington, D.C.
16. Fetherston, J. D., P. Schuetze, and R. D. Perry. 1992. Loss of the pigmentation phenotype in Yersinia pestis is due to the spontaneous deletion of 102 kb of chromosomal DNA which is flanked by a repetitive clement. Mol. Microbiol. 6:2693-2704.
17. Galan, J. E. 1996. Molecular genetic bases of Salmonella entry into host cells. Mol. Microbiol. 20:263-271.
18. Galan, J. E., and P. J. Sansonetti. 1996. Molecular and cellular bases of Salmonella and Shigella interactions with host cells, p. 2757-2773. In F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, Jr., B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed. ASM Press, Washington, D.C.
19. Groisman, E. A., and H. Ochman. 1993. Cognate gene clusters govern invasion of host epithelial cells by Salmonella typhimurium and Shigella flexneri. EMBO J. 12:3779-3787.
20. Groisman, E. A., and H. Ochman. 1994. How to become a pathogen. Trends Microbiol. 2:289-293.
21. Groisman, E. A., M. H. Saier, Jr., and H. Ochman. 1992. Horizontal transfer of a phosphatase gene as evidence for mosaic structure of the Salmonella genome. EMBO J. 11:1309-1316.
22. Hensel, M., J. E. Shea, C. Gleeson, M. D. Jones, E. Dalton, and D. W. Holden. 1995. Simultaneous identification of bacterial virulence genes by negative selection. Science 269:400-403.
23. 22a. Hensel, M. Unpublished data.
24. Kohara, Y., K. Akiyama, and K. Isono. 1987. The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50:495-508.
25. Komine, Y., T. Adachi, H. Inokuchi, and H. Ozeki. 1990. Genomic organisation and physical mapping of the transfer RNA genes in Escherichia coli K12. J. Mol. Biol. 212:579-598.
26. Lilleengen, L. 1948. Typing Salmonella typhimurium by means of bacteriophage. Acta Pathol. Microbiol. Scand. Suppl. 77:11-125.
27. Maurer, R., B. C. Osmond, E. Shekhtman, A. Wong, and D. Botstein. 1984. Functional interchangeability of DNA replication genes in Salmonella typhimurium and Escherichia coli demonstrated by a general complementation procedure. Genetics 108:1-23.
28. McDaniel, T. K., K. G. Jarvis, M. S. Donnenberg, and J. B. Kaper. 1995. A genetic locus of enterocyte effacement conserved among diverse enterobacterial pathogens. Proc. Natl. Acad. Sci. USA 92:1664-1668.
29. Miller, S. I., E. L. Hohmann, and D. A. Pegues. 1995. Salmonella (including Salmonella typhi), p. 2013-2033. In G. L. Mandell, J. E. Bennett, and R. Dolin (ed.), Mandell, Douglas and Bennett's principles and practice of infectious diseases. Churchill Livingstone, Inc. New York, N.Y.
30. Mills, D. M., V. Bajaj, and C. A. Lee. 1995. A 40 kb chromosomal fragment encoding Salmonella typhimurium invasion genes is absent from the corresponding region of the Escherichia coli K-12 chromosome. Mol. Microbiol. 15:749-759.
31. Ochman, H., F. C. Soncini, F. Solomon, and E. L. Groisman. 1996. Identification of a pathogenicity island required for Salmonella survival in host cells. Proc. Natl. Acad. Sci. USA 93:7800-7804.
32. Ohara, O., R. L. Dorit, and W. Gilbert. 1989. Direct genomic sequencing of bacterial DNA: the pyruvate kinase I gene of Escherichia coli. Proc. Natl. Acad. Sci. USA 86:6883-6887.
33. Parsot, C. 1994. Shigella flexneri: genetics of entry and intercellular dissemination in epithelial cells. Curr. Top. Microbiol. Immunol. 192:217-241.
34. Rahn, K., S. A. De Grandis, R. C. Clarke, S. A. McEwen, J. E. Galan, C. Ginoccnio, R. Curtiss, and C. L. Gyles. 1992. Amplification of an invA gene sequence of Salmonella typhimurium by polymerase chain reaction as a specific method of detection of Salmonella. Mol. Cell Probes 6:271-279.
35. Reeves, M. W., G. M. Evins, A. A. Heiba, B. D. Plikaytis, and J. J. Farmer III. 1989. Clonal nature of Salmonella typhi and its genetic relatedness to other salmonellae as shown by multilocus enzyme electrophoresis, and proposal of Salmonella bongori comb. nov. J. Clin. Microhiol. 27:313-320.
36. Ritter, A., G. Blum, L. Emody, M. Kerenyi, A. Bock, B. Neuhierl, W. Rabsch, F. Scheutz, and J. Hacker. 1995. tRNA genes and pathogenicity islands: influence on virulence and metabolic properties of uropathogenic Escherichia coll. Mol. Microbiol. 17:109-121.
37. Rode, C. K., V. H. Obreque, and C. A. Bloch. 1995. New tools for integrated genetic and physical analysis of the Escherichia coli chromosome. Gene 166:109-121.
38. Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
39. Sanderson, K. E., A. Hessel, and K. E. Rudd. 1995. Genetic map of Salmonella typhimurium, edition VIII. Microhiol. Rev. 59:241-303.
40. Sanger, F., S. Nicklen, and A. R. Coulson. 1977. DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA 74:5463-5467.
41. Shea, J. E., M. Hensel, C. Gleeson, and D. W. Holden. 1996. Identification of a virulence locus encoding a second type III secretion system in Salmonella typltimurium. Proc. Natl. Acad. Sci. USA 93:2593-2597.