Optimizing the enrichment of cross-linked products for mass spectrometric protein analysis

Rapid Communications in Mass Spectrometry

Volumn 26, Issue 6, 2012, Pages 653-658

  Fritzsche, Romy ^a   Ihling, Christian H ^a   Götze, Michael ^a   Sinz, Andrea ^a  

^a MARTIN LUTHER UNIVERSITY HALLE WITTENBERG   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BODY FLUIDS; CHROMATOGRAPHY; CROSSLINKING; MASS SPECTROMETERS; MASS SPECTROMETRY; STRUCTURAL ANALYSIS;

BOVINE SERUM ALBUMINS; CATION EXCHANGE CHROMATOGRAPHY; CROSS LINKING; ESI-MS-MS; GLUTATHIONE S-TRANSFERASES; MASS SPECTROMETRIC ANALYSIS; NANO-ESI; PROTEIN ANALYSIS; STRONG CATION EXCHANGES; STRUCTURAL INFORMATION;

PEPTIDES;

EID: 84857097692     PISSN: 09514198     EISSN: 10970231     Source Type: Journal    
DOI: 10.1002/rcm.6150     Document Type: Article

References (20)

1. B. W. Gibson, M. M. Young, N. Tang, J. C. Hempel, C. M. Oshiro, E. W. Taylor, I. D. Kuntz, G. Dollinger,. High throughput protein fold identification by using experimental constraints derived from intramolecular cross-links and mass spectrometry. Proc. Natl. Acad. Sci. USA 2000, 97, 5802.
2. J. W. Back, L. de Jong, A. O. Muijsers, C. G. de Koster,. Chemical cross-linking and mass spectrometry for protein structural modeling. J. Mol. Biol. 2003, 331, 303.
3. D. Fabris, E. T. Yu,. Elucidating the higher-order structure of biopolymers by structural probing and mass spectrometry: MS3D. J. Mass Spectrom. 2010, 45, 841.
4. A. Sinz,. Chemical cross-linking and mass spectrometry to map three-dimensional protein structures and protein-protein interactions. Mass Spectrom. Rev. 2006, 25, 663.
5. A. Sinz,. Investigation of protein-protein interactions in living cells by chemical crosslinking and mass spectrometry. Anal. Bioanal. Chem. 2010, 397, 3433.
6. Y. J. Lee,. Mass spectrometric analysis of cross-linking sites for the structure of proteins and protein complexes. Mol. Biosyst. 2008, 4, 816.
7. J. E. Bruce, H. Z. Zhang, X. T. Tang, G. R. Munske, N. Tolic, G. A. Anderson,. Identification of protein-protein interactions and topologies in living cells with chemical cross-linking and mass spectrometry. Mol. Cell. Proteomics 2009, 8, 409.
8. J. Rappsilber,. The beginning of a beautiful friendship: Cross-linking/mass spectrometry and modelling of proteins and multi-protein complexes. J. Struct. Biol. 2011, 173, 530.
9. C. H. Borchers, E. V. Petrotchenko,. Crosslinking combined with mass spectrometry for structural proteomics. Mass Spectrom. Rev. 2010, 29, 862.
10. A. N. Glazer,. Bioconjugate techniques-Hermanson, GT. Nature 1996, 381, 290.
11. C. L. Swaim, D. L. Smith, J. B. Smith,. Unexpected products from the reaction of the synthetic cross-linker 3,3'-dithiobis(sulfosuccinimidyl propionate), DTSSP with peptides. J. Am. Soc. Mass Spectrom. 2004, 15, 736.
12. A. Maiolica, J. Rappsilber, D. Cittaro, D. Borsotti, L. Sennels, C. Ciferri, C. Tarricone, A. Musacchio,. Structural analysis of multiprotein complexes by cross-linking, mass spectrometry, and database searching. Mol. Cell. Proteomics 2007, 6, 2200.
13. O. Rinner, J. Seebacher, T. Walzthoeni, L. N. Mueller, M. Beck, A. Schmidt, M. Mueller, R. Aebersold,. Identification of cross-linked peptides from large sequence databases. Nat. Methods 2008, 5, 315.
14. A. Leitner, T. Walzthoeni, A. Kahraman, F. Herzog, O. Rinner, M. Beck, R. Aebersold,. Probing native protein structures by chemical cross-linking, mass spectrometry, and bioinformatics. Mol. Cell. Proteomics 2010, 9, 1634.
15. B. Schilling, R. H. Row, B. W. Gibson, X. Guo, M. M. Young,. MS2Assign, automated assignment and nomenclature of tandem mass spectra of chemically crosslinked peptides. J. Am. Soc. Mass Spectrom. 2003, 14, 834.
16. M. Götze, J. Pettelkau, S. Schaks, K. Bosse, C. H. Ihling, F. Krauth, R. Fritzsche, U. Kühn, A. Sinz,. StavroX-A software for analyzing crosslinked products in protein interaction studies. J. Am. Soc. Mass Spectrom. 2012, 23, 76.
17. Z. A. Chen, J. Rappsilber, A. Jawhari, L. Fischer, C. Buchen, S. Tahir, T. Kamenski, M. Rasmussen, L. Lariviere, J. C. Bukowski-Wills, M. Nilges, P. Cramer,. Architecture of the RNA polymerase II-TFIIF complex revealed by cross-linking and mass spectrometry. EMBO J. 2010, 29, 717.
18. J. P. Reilly, M. A. Lauber,. Structural analysis of a prokaryotic ribosome using a novel amidinating cross-linker and mass spectrometry. J. Proteome Res. 2011, 10, 3604.
19. B. Manadas, V. M. Mendes, J. English, M. J. Dunn,. Peptide fractionation in proteomics approaches. Expert Rev. Proteomics 2010, 7, 655.
20. V. Levi, F. L. Gonzalez Flecha,. Reversible fast-dimerization of bovine serum albumin detected by fluorescence resonance energy transfer. Biochim. Biophys. Acta 2002, 1599, 141.