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Volumn 81 A, Issue 9, 2012, Pages 743-754

Automatic segmentation and supervised learning-based selection of nuclei in cancer tissue images

Author keywords

Artificial neural network; Cancer diagnosis; Image analysis; Pattern classification; Tissue segmentation; Watershed

Indexed keywords

BASIC HELIX LOOP HELIX TRANSCRIPTION FACTOR; HES5 PROTEIN, HUMAN; REPRESSOR PROTEIN;

EID: 84865439855     PISSN: 15524922     EISSN: 15524930     Source Type: Journal    
DOI: 10.1002/cyto.a.22097     Document Type: Article
Times cited : (28)

References (59)
  • 1
    • 0003964363 scopus 로고    scopus 로고
    • American Cancer Society. Atlanta: American Cancer Society
    • American Cancer Society. Cancer Facts & Figures 2011. Atlanta: American Cancer Society; 2011.
    • (2011) Cancer Facts & Figures 2011
  • 2
    • 0023145547 scopus 로고
    • The molecular genetics of cancer
    • Bishop JM. The molecular genetics of cancer. Science 1987;235:305-311.
    • (1987) Science , vol.235 , pp. 305-311
    • Bishop, J.M.1
  • 3
    • 0035831038 scopus 로고    scopus 로고
    • Positions of potential:nuclear organization and gene expression
    • Gasser S. Positions of potential:nuclear organization and gene expression. Cell 2001;104:639-642.
    • (2001) Cell , vol.104 , pp. 639-642
    • Gasser, S.1
  • 4
    • 33846535507 scopus 로고    scopus 로고
    • Cell biology: Chromosome territories
    • Meaburn KJ, Misteli T. Cell biology: Chromosome territories. Nature 2007;445: 379-381.
    • (2007) Nature , vol.445 , pp. 379-381
    • Meaburn, K.J.1    Misteli, T.2
  • 5
    • 0036709614 scopus 로고    scopus 로고
    • Chromosome positioning in the interphase nucleus
    • Parada LA, Misteli T. Chromosome positioning in the interphase nucleus. Trends Cell Biol 2002;12:425-432.
    • (2002) Trends Cell Biol , vol.12 , pp. 425-432
    • Parada, L.A.1    Misteli, T.2
  • 6
    • 38349080953 scopus 로고    scopus 로고
    • Locus-specific and activity-independent gene repositioning during early tumorigenesis
    • Meaburn KJ, Misteli T. Locus-specific and activity-independent gene repositioning during early tumorigenesis. J Cell Biol 2008;180:39-50.
    • (2008) J Cell Biol , vol.180 , pp. 39-50
    • Meaburn, K.J.1    Misteli, T.2
  • 8
    • 64549123004 scopus 로고    scopus 로고
    • Automatic segmentation of cell nuclei in bladder and skin tissue for karyometric analysis
    • Korde VR, Bartels H, Barton J, Ranger-Moore J. Automatic segmentation of cell nuclei in bladder and skin tissue for karyometric analysis. Anal Quant Cytol Histol 2009;31:83-89.
    • (2009) Anal Quant Cytol Histol , vol.31 , pp. 83-89
    • Korde, V.R.1    Bartels, H.2    Barton, J.3    Ranger-Moore, J.4
  • 9
    • 37549005552 scopus 로고    scopus 로고
    • High content image analysis for human H4 neuroglioma cells exposed to CuO nanoparticles
    • doi:101186/1472-6750-7-66
    • Li F, Zhou X, Zhu J, Ma J, Huang X, Wong S. High content image analysis for human H4 neuroglioma cells exposed to CuO nanoparticles. BMC Biotechnol 2007;7:66. doi:10.1186/1472-6750-7-66.
    • (2007) BMC Biotechnol , vol.7 , pp. 66
    • Li, F.1    Zhou, X.2    Zhu, J.3    Ma, J.4    Huang, X.5    Wong, S.6
  • 11
    • 77950245872 scopus 로고    scopus 로고
    • Improved automatic detection and segmentation of cell nuclei in histopathology images
    • Al-Kofahi Y, Lassoued W, Lee W, Roysam B. Improved automatic detection and segmentation of cell nuclei in histopathology images. IEEE Trans Biomed Eng 2010;57:841-852.
    • (2010) IEEE Trans Biomed Eng , vol.57 , pp. 841-852
    • Al-Kofahi, Y.1    Lassoued, W.2    Lee, W.3    Roysam, B.4
  • 13
    • 0035107394 scopus 로고    scopus 로고
    • Segmentation of nuclei and cells using membrane related protein markers
    • Solorzano COD, Malladi R, Lelivre SA, Lockett SJ. Segmentation of nuclei and cells using membrane related protein markers. J Microsc 2001;201(Pt 1):404-415.
    • (2001) J Microsc , vol.201 , Issue.PART 1 , pp. 404-415
    • Solorzano, C.O.D.1    Malladi, R.2    Lelivre, S.A.3    Lockett, S.J.4
  • 16
    • 65349111374 scopus 로고    scopus 로고
    • Segmentation of clustered nuclei with shape markers and marking function
    • Cheng J, Rajapakse JC. Segmentation of clustered nuclei with shape markers and marking function. IEEE Trans Biomed Eng 2009;56:741-748.
    • (2009) IEEE Trans Biomed Eng , vol.56 , pp. 741-748
    • Cheng, J.1    Rajapakse, J.C.2
  • 17
    • 34548299771 scopus 로고    scopus 로고
    • A multi-model approach to simultaneous segmentation and classification of heterogeneous populations of cell nuclei in 3D confocal microscope images
    • Lin G, Chawla MK, Olson K, Barnes CA, Guzowski JF, Bjornsson C, Shain W, Roysam B. A multi-model approach to simultaneous segmentation and classification of heterogeneous populations of cell nuclei in 3D confocal microscope images. Cytometry A 2007;71A:724-736.
    • (2007) Cytometry A , vol.71 A , pp. 724-736
    • Lin, G.1    Chawla, M.K.2    Olson, K.3    Barnes, C.A.4    Guzowski, J.F.5    Bjornsson, C.6    Shain, W.7    Roysam, B.8
  • 18
    • 57049093300 scopus 로고    scopus 로고
    • Fuzzy clustering and active contours for histopathology image segmentation and nuclei detection
    • Hafiane A, Bunyak F, Palaniappan K. Fuzzy clustering and active contours for histopathology image segmentation and nuclei detection. Lect Notes Comput Sci 2008;5259:903-914.
    • (2008) Lect Notes Comput Sci , vol.5259 , pp. 903-914
    • Hafiane, A.1    Bunyak, F.2    Palaniappan, K.3
  • 19
    • 77953803946 scopus 로고    scopus 로고
    • Expectation maximization-Driven geodesic active contour with overlap resolution (EMaGACOR): Application to lymphocyte segmentation on breast cancer histopathology
    • Fatakdawala H, Xu J, Basavanhally A, Bhanot G, Ganesan S, Feldman M, Tomaszewski JE, Madabhushi A. Expectation maximization-Driven geodesic active contour with overlap resolution (EMaGACOR): Application to lymphocyte segmentation on breast cancer histopathology. IEEE Trans Biomed Eng 2010;57: 1676-1689.
    • (2010) IEEE Trans Biomed Eng , vol.57 , pp. 1676-1689
    • Fatakdawala, H.1    Xu, J.2    Basavanhally, A.3    Bhanot, G.4    Ganesan, S.5    Feldman, M.6    Tomaszewski, J.E.7    Madabhushi, A.8
  • 20
    • 77955632064 scopus 로고    scopus 로고
    • Characterization of biological processes through automated image analysis
    • Rittscher J. Characterization of biological processes through automated image analysis. Ann Rev Biomed Eng 2010;12:315-344.
    • (2010) Ann Rev Biomed Eng , vol.12 , pp. 315-344
    • Rittscher, J.1
  • 21
    • 0018814511 scopus 로고
    • Machine-assisted pattern classification in medicine and biology
    • Li CC, Fu KS. Machine-assisted pattern classification in medicine and biology. Annu Rev Biophys Bioeng 1980;9:393-436.
    • (1980) Annu Rev Biophys Bioeng , vol.9 , pp. 393-436
    • Li, C.C.1    Fu, K.S.2
  • 22
    • 84872612248 scopus 로고
    • Wisconsin Breast Cancer Database. Available at. Accessed June 2011.
    • Wolberg WH. Wisconsin Breast Cancer Database. Available at http://archive.ics.uci.edu/ml/datasets/Breast+Cancer+Wisconsin+(Original);1991. Accessed June 2011.
    • (1991)
    • Wolberg, W.H.1
  • 23
    • 0025651706 scopus 로고
    • Multisurface method of pattern separation for medical diagnosis applied to breast cytology
    • Wolberg WH, Mangasarian O. Multisurface method of pattern separation for medical diagnosis applied to breast cytology. Proc Nat Acad Sci USA 1990;87:9193-9196.
    • (1990) Proc Nat Acad Sci USA , vol.87 , pp. 9193-9196
    • Wolberg, W.H.1    Mangasarian, O.2
  • 24
    • 70450207603 scopus 로고    scopus 로고
    • High-content screening of primary neurons: Ready for prime time
    • Daub A, Sharma P, Finkbeiner S. High-content screening of primary neurons: Ready for prime time. Curr Opin Neurobiol 2009;19:537-543.
    • (2009) Curr Opin Neurobiol , vol.19 , pp. 537-543
    • Daub, A.1    Sharma, P.2    Finkbeiner, S.3
  • 25
    • 60049097633 scopus 로고    scopus 로고
    • An image score inference system for RNAi genome-wide screening based on fuzzy mixture regression modeling
    • Wang J, Zhou X, Li F, Bradley PL, Chang S, Perrimon N, Wong STC. An image score inference system for RNAi genome-wide screening based on fuzzy mixture regression modeling. J Biomed Inform 2009;42:32-40.
    • (2009) J Biomed Inform , vol.42 , pp. 32-40
    • Wang, J.1    Zhou, X.2    Li, F.3    Bradley, P.L.4    Chang, S.5    Perrimon, N.6    Wong, S.T.C.7
  • 26
    • 33646261138 scopus 로고    scopus 로고
    • Automated interpretation of protein subcellular location patterns
    • Chen X, Murphy RF. Automated interpretation of protein subcellular location patterns. Int Rev Cytol 2006;249:193-227.
    • (2006) Int Rev Cytol , vol.249 , pp. 193-227
    • Chen, X.1    Murphy, R.F.2
  • 28
    • 69649107067 scopus 로고    scopus 로고
    • Challenges of automated screening and differentiation of non-organ specific autoantibodies on HEp-2 cells
    • Hiemann R, Büttner T, Krieger T, Roggenbuck D, Sack U, Conrad K. Challenges of automated screening and differentiation of non-organ specific autoantibodies on HEp-2 cells. Autoimmun Rev 2009;9:17.22.
    • (2009) Autoimmun Rev , vol.9 , pp. 1722
    • Hiemann, R.1    Büttner, T.2    Krieger, T.3    Roggenbuck, D.4    Sack, U.5    Conrad, K.6
  • 29
    • 77954270764 scopus 로고    scopus 로고
    • Beyond co-localization: Inferring spatial interactions between subcellular structures from microscopy images
    • doi:10.1186/1471-2105-11-372.
    • Helmuth JA, Paul G, Sbalzarini IF. Beyond co-localization: Inferring spatial interactions between subcellular structures from microscopy images. BMC Bioinformatics 2010;11:372. doi:10.1186/1471-2105-11-372.
    • (2010) BMC Bioinformatics , vol.11 , pp. 372
    • Helmuth, J.A.1    Paul, G.2    Sbalzarini, I.F.3
  • 30
    • 36248952691 scopus 로고    scopus 로고
    • Impact of image segmentation on high-content screening data quality for SK-BR-3 cells
    • doi:10.1186/1471-2105-8-340.
    • Hill AA, LaPan P, Li Y, Haney S. Impact of image segmentation on high-content screening data quality for SK-BR-3 cells. BMC Bioinformatics 2007;8:340. doi:10.1186/1471-2105-8-340.
    • (2007) BMC Bioinformatics , vol.8 , pp. 340
    • Hill, A.A.1    LaPan, P.2    Li, Y.3    Haney, S.4
  • 32
    • 84872613813 scopus 로고    scopus 로고
    • Available at Accessed March 2008.
    • Bacry E. Available at http://www.cmap.polytechnique.fr/bacry/LastWave/ 1998-2004. Accessed March 2008.
    • (1998)
    • Bacry, E.1
  • 33
    • 84865403321 scopus 로고
    • Adaptive Mulitdimensional Filtering. Ph.D. thesis, Linkoping University, Sweden
    • Haglund L. Adaptive Mulitdimensional Filtering. Ph.D. thesis, Linkoping University, Sweden;1992.
    • (1992)
    • Haglund, L.1
  • 34
    • 0018004847 scopus 로고
    • Picture thresholding using an iterative selection method
    • Ridler T, Calvard S. Picture thresholding using an iterative selection method. IEEE Trans System Man Cybernatics 1978;8:630-632.
    • (1978) IEEE Trans System Man Cybernatics , vol.8 , pp. 630-632
    • Ridler, T.1    Calvard, S.2
  • 35
    • 0028464661 scopus 로고
    • Topographic distance and watershed lines
    • Meyer F. Topographic distance and watershed lines. Signal Process 1994;38:113-125.
    • (1994) Signal Process , vol.38 , pp. 113-125
    • Meyer, F.1
  • 39
    • 13244256957 scopus 로고    scopus 로고
    • Hierarchical, model-based merging of multiple fragments for improved three dimensional segmentation of nuclei
    • Lin G, Chawla MK, Olson K, Guzowski JF, Barnes CA, Roysam B. Hierarchical, model-based merging of multiple fragments for improved three dimensional segmentation of nuclei. Cytometry A 2005;63A:20-33.
    • (2005) Cytometry A , vol.63 A , pp. 20-33
    • Lin, G.1    Chawla, M.K.2    Olson, K.3    Guzowski, J.F.4    Barnes, C.A.5    Roysam, B.6
  • 40
    • 0031239593 scopus 로고    scopus 로고
    • A shape factor to assess the shape of particles using image analysis
    • Podczeck F. A shape factor to assess the shape of particles using image analysis. Powder Technol 1997;93:47-53.
    • (1997) Powder Technol , vol.93 , pp. 47-53
    • Podczeck, F.1
  • 41
    • 0018466704 scopus 로고
    • Statistical and structural approaches to texture
    • Haralick RM. Statistical and structural approaches to texture. Proc IEEE 1979;67:786-804.
    • (1979) Proc IEEE , vol.67 , pp. 786-804
    • Haralick, R.M.1
  • 42
    • 0034564603 scopus 로고    scopus 로고
    • Artificial neural networks: fundamentals, computing, design, and application
    • Basheer IA, Hajmeer M. Artificial neural networks: fundamentals, computing, design, and application. J Microbiol Methods 2000;43:3-31.
    • (2000) J Microbiol Methods , vol.43 , pp. 3-31
    • Basheer, I.A.1    Hajmeer, M.2
  • 43
    • 0035308429 scopus 로고    scopus 로고
    • Feature normalization and likelihood-based similarity measures for image retrieval
    • Aksoy S, Haralick R. Feature normalization and likelihood-based similarity measures for image retrieval. Pattern Recogn Lett 2001;22:563-582.
    • (2001) Pattern Recogn Lett , vol.22 , pp. 563-582
    • Aksoy, S.1    Haralick, R.2
  • 44
    • 33745561205 scopus 로고    scopus 로고
    • An introduction to variable and feature selection
    • Guyon I, Elisseeff A. An introduction to variable and feature selection. J Mach Lear Res 2003;3:1157-1182.
    • (2003) J Mach Lear Res , vol.3 , pp. 1157-1182
    • Guyon, I.1    Elisseeff, A.2
  • 45
    • 0000169232 scopus 로고
    • An algorithm for least-squares estimation of nonlinear parameters
    • Marquardt DW. An algorithm for least-squares estimation of nonlinear parameters. J Soc Ind Appl Math 1963;11:431-441.
    • (1963) J Soc Ind Appl Math , vol.11 , pp. 431-441
    • Marquardt, D.W.1
  • 46
    • 33846446220 scopus 로고
    • Restart procedures for the conjugate gradient method
    • Powell MJD. Restart procedures for the conjugate gradient method. Math Program 1977;12:241-254.
    • (1977) Math Program , vol.12 , pp. 241-254
    • Powell, M.J.D.1
  • 48
    • 0038076657 scopus 로고    scopus 로고
    • Matlab 2008a., The Mathworks, Inc., Natick MA, USA
    • Matlab 2008a. Neural Network Toolbox, The Mathworks, Inc., Natick MA, USA; 2008.
    • (2008) Neural Network Toolbox
  • 51
    • 84950632109 scopus 로고
    • Objective criteria for the evaluation of clustering methods
    • Rand WM. Objective criteria for the evaluation of clustering methods. J Am Stat Assoc 1971;66:846-850.
    • (1971) J Am Stat Assoc , vol.66 , pp. 846-850
    • Rand, W.M.1
  • 52
    • 0000250265 scopus 로고
    • Measures of the amount of ecologic association between species
    • Dice LR. Measures of the amount of ecologic association between species. Ecology 1945;26:297-302.
    • (1945) Ecology , vol.26 , pp. 297-302
    • Dice, L.R.1
  • 54
    • 0037376416 scopus 로고    scopus 로고
    • An overview of the notch signalling pathway
    • Baron M. An overview of the notch signalling pathway. Semin Cell Dev Biol 2003;14:113-119.
    • (2003) Semin Cell Dev Biol , vol.14 , pp. 113-119
    • Baron, M.1
  • 55
    • 51449106100 scopus 로고    scopus 로고
    • Segmentation and analysis of the three-dimensional redistribution of nuclear components in human mesenchymal stem cells
    • Vermolen BJ, Garini Y, Young IT, Dirks RW, Raz V. Segmentation and analysis of the three-dimensional redistribution of nuclear components in human mesenchymal stem cells. Cytometry A 2008;73A:816-824.
    • (2008) Cytometry A , vol.73 A , pp. 816-824
    • Vermolen, B.J.1    Garini, Y.2    Young, I.T.3    Dirks, R.W.4    Raz, V.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.