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Volumn 100, Issue 1, 2010, Pages 1-15

Automated segmentation of tissue images for computerized IHC analysis

Author keywords

Image processing; Immunohistochemistry; Nuclear segmentation; Tissue images; Tissue segmentation

Indexed keywords

ACTIVE CONTOURS; AUTOMATED METHODS; AUTOMATED SEGMENTATION; CANCEROUS CELLS; COLOR CLUSTERING; IMMUNOHISTOCHEMISTRY; MANUAL SEGMENTATION; MORPHOLOGICAL PROCESSING; NUCLEAR MEMBRANES; NUCLEAR SEGMENTATION; TISSUE IMAGES; TISSUE SEGMENTATION;

EID: 77955990686     PISSN: 01692607     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cmpb.2010.02.002     Document Type: Article
Times cited : (116)

References (49)
  • 3
    • 38349106221 scopus 로고    scopus 로고
    • Joint co-clustering: co-clustering of genomic and clinical bioimaging data
    • Ficarra E., De Micheli G., Yoon S., Benini L., Macii E. Joint co-clustering: co-clustering of genomic and clinical bioimaging data. Comput. Math. Appl. 2008, 55(5):938-949.
    • (2008) Comput. Math. Appl. , vol.55 , Issue.5 , pp. 938-949
    • Ficarra, E.1    De Micheli, G.2    Yoon, S.3    Benini, L.4    Macii, E.5
  • 6
    • 33745950635 scopus 로고    scopus 로고
    • Immunohistochemistry and quantitative analysis of protein expression
    • Cregger M., Berger A.J., Rimm D.L. Immunohistochemistry and quantitative analysis of protein expression. Arch. Pathol. Lab. Med. 2006, 130(7):1026-1030.
    • (2006) Arch. Pathol. Lab. Med. , vol.130 , Issue.7 , pp. 1026-1030
    • Cregger, M.1    Berger, A.J.2    Rimm, D.L.3
  • 8
    • 0037347757 scopus 로고    scopus 로고
    • Comparison of quantification of histochemical staining by Hue-Saturation-Intensity (HSI) transformation and color deconvolution
    • Ruifrok A.C., Katz R.L., Johnston D.A. Comparison of quantification of histochemical staining by Hue-Saturation-Intensity (HSI) transformation and color deconvolution. Appl. Immunohistochem. 2004, 11(1):85-91.
    • (2004) Appl. Immunohistochem. , vol.11 , Issue.1 , pp. 85-91
    • Ruifrok, A.C.1    Katz, R.L.2    Johnston, D.A.3
  • 9
    • 38049091384 scopus 로고    scopus 로고
    • Tissue microarrays-automated analysis and future directions
    • Divito K.A., Camp R.L. Tissue microarrays-automated analysis and future directions. Breast Cancer Online 2005, 8(7).
    • (2005) Breast Cancer Online , vol.8 , Issue.7
    • Divito, K.A.1    Camp, R.L.2
  • 10
    • 65349111374 scopus 로고    scopus 로고
    • Segmentation of clustered nuclei with shape markers and marking functions
    • Cheng J., Rajapakse J.C. Segmentation of clustered nuclei with shape markers and marking functions. IEEE Trans. Biomed. Eng. 2009, 56(3):741-748.
    • (2009) IEEE Trans. Biomed. Eng. , vol.56 , Issue.3 , pp. 741-748
    • Cheng, J.1    Rajapakse, J.C.2
  • 11
    • 77956008894 scopus 로고    scopus 로고
    • BioImagene Innovative Digital Pathology, .
    • BioImagene Innovative Digital Pathology, http://www.bioimagene.com.
  • 12
    • 33846189790 scopus 로고    scopus 로고
    • Virtual flow cytometry of immunostained lymphocytes on microscopic tissue slides: iHCFlow™ tissue cytometry
    • Cualing H.D., Zhong E., Moscinski L. Virtual flow cytometry of immunostained lymphocytes on microscopic tissue slides: iHCFlow™ tissue cytometry. Cytometry B 2007, 72:63-76.
    • (2007) Cytometry B , vol.72 , pp. 63-76
    • Cualing, H.D.1    Zhong, E.2    Moscinski, L.3
  • 13
    • 77955986171 scopus 로고    scopus 로고
    • Tissuegnostics Image Analysis System, .
    • Tissuegnostics Image Analysis System, http://www.tissuegnostics.com.
  • 14
    • 24744438200 scopus 로고    scopus 로고
    • DNA index determination with automated cellular imaging system (ACIS) in Barrett's esophagus: comparison with CAS 200
    • Huang Q., Yu C., Klein M., Fang J., Goyal R.K. DNA index determination with automated cellular imaging system (ACIS) in Barrett's esophagus: comparison with CAS 200. BMC Clin. Pathol. 2005, 5.
    • (2005) BMC Clin. Pathol. , vol.5
    • Huang, Q.1    Yu, C.2    Klein, M.3    Fang, J.4    Goyal, R.K.5
  • 15
    • 77956007122 scopus 로고    scopus 로고
    • Cambridge Research Inc., .
    • Cambridge Research Inc., http://www.cri-inc.com.
  • 16
    • 77956005156 scopus 로고    scopus 로고
    • Aperio Scanscope, .
    • Aperio Scanscope, http://www.aperio.com.
  • 17
    • 77956007867 scopus 로고    scopus 로고
    • AQUA Automated Quantitative Analysis, .
    • AQUA Automated Quantitative Analysis, http://www.historx.com.
  • 18
    • 33645010198 scopus 로고    scopus 로고
    • Automated nuclear segmentation in the determination of the Ki-67 labeling index in meningiomas
    • Kim Y.J., Romeike B.F., Uszkoreit J., Feiden W. Automated nuclear segmentation in the determination of the Ki-67 labeling index in meningiomas. Clin. Neuropathol. 2006, 25(2):67-73.
    • (2006) Clin. Neuropathol. , vol.25 , Issue.2 , pp. 67-73
    • Kim, Y.J.1    Romeike, B.F.2    Uszkoreit, J.3    Feiden, W.4
  • 19
    • 36349017725 scopus 로고    scopus 로고
    • Automatic segmentation of nuclei in 3D microscopy images of C. elegans
    • Long F., Peng H., Myers E. Automatic segmentation of nuclei in 3D microscopy images of C. elegans. ISBI 2007, 536-539.
    • (2007) ISBI , pp. 536-539
    • Long, F.1    Peng, H.2    Myers, E.3
  • 20
    • 25844480547 scopus 로고    scopus 로고
    • Unsupervised segmentation based on robust estimation and color active contour models
    • Yang L., Meer P., Foran D.J. Unsupervised segmentation based on robust estimation and color active contour models. IEEE Trans. Inform. Technol. B 2005, 9(3):475-486.
    • (2005) IEEE Trans. Inform. Technol. B , vol.9 , Issue.3 , pp. 475-486
    • Yang, L.1    Meer, P.2    Foran, D.J.3
  • 21
    • 1942532718 scopus 로고    scopus 로고
    • Level set analysis for leukocyte detection and tracking
    • Mukherjee D.P., Ray N., Acton S.T. Level set analysis for leukocyte detection and tracking. IEEE Trans. Image Process 2004, 13(4):562-572.
    • (2004) IEEE Trans. Image Process , vol.13 , Issue.4 , pp. 562-572
    • Mukherjee, D.P.1    Ray, N.2    Acton, S.T.3
  • 22
    • 4344607611 scopus 로고    scopus 로고
    • Efficient energies and algorithms for parametric snakes
    • Jacob M., Blu T., Unser M. Efficient energies and algorithms for parametric snakes. IEEE Trans. Image Process 2004, 13(9):1231-1244.
    • (2004) IEEE Trans. Image Process , vol.13 , Issue.9 , pp. 1231-1244
    • Jacob, M.1    Blu, T.2    Unser, M.3
  • 23
    • 17144413016 scopus 로고    scopus 로고
    • Tracking fluorescent cells with coupled geometric active contours
    • Zhang B., Zimmer C., Olivo-Marin J.C. Tracking fluorescent cells with coupled geometric active contours. ISBI 2004, 476-479.
    • (2004) ISBI , pp. 476-479
    • Zhang, B.1    Zimmer, C.2    Olivo-Marin, J.C.3
  • 24
    • 65349111374 scopus 로고    scopus 로고
    • Segmentation of clustered nuclei with shape markers and marking function
    • Cheng J., Rajapakse J.C. Segmentation of clustered nuclei with shape markers and marking function. IEEE Trans. Biomed. Eng. 2009, 56:741-748.
    • (2009) IEEE Trans. Biomed. Eng. , vol.56 , pp. 741-748
    • Cheng, J.1    Rajapakse, J.C.2
  • 25
    • 0037328026 scopus 로고    scopus 로고
    • Estimation of tissue layer by sequential morphological reconstruction
    • Landini G., Othman I.E. Estimation of tissue layer by sequential morphological reconstruction. J. Microsc. 2003, 209(2):118-125.
    • (2003) J. Microsc. , vol.209 , Issue.2 , pp. 118-125
    • Landini, G.1    Othman, I.E.2
  • 26
    • 33745176637 scopus 로고    scopus 로고
    • Seeded watersheds for combined segmentation and tracking of cells
    • Pinidiyaarachchi A., Wahlby C. Seeded watersheds for combined segmentation and tracking of cells. ICIAP05, vol. 3617 2005, 336-343.
    • (2005) ICIAP05, vol. 3617 , pp. 336-343
    • Pinidiyaarachchi, A.1    Wahlby, C.2
  • 28
  • 29
    • 51049110072 scopus 로고    scopus 로고
    • Automated gland and nuclei segmentation for grading of prostate and breast cancer histopathology
    • Naik S., Doyle S., Agner S., Madabhushi A., Feldman M., Tomaszewski J. Automated gland and nuclei segmentation for grading of prostate and breast cancer histopathology. ISBI 2008, 284-287.
    • (2008) ISBI , pp. 284-287
    • Naik, S.1    Doyle, S.2    Agner, S.3    Madabhushi, A.4    Feldman, M.5    Tomaszewski, J.6
  • 30
    • 33746427122 scopus 로고    scopus 로고
    • Graph cuts and efficient N-D images segmentation
    • Boykov Y., Funka-Lea G. Graph cuts and efficient N-D images segmentation. Int. J. Comput. Vis. 2006, 70(2):109-131.
    • (2006) Int. J. Comput. Vis. , vol.70 , Issue.2 , pp. 109-131
    • Boykov, Y.1    Funka-Lea, G.2
  • 31
    • 26444491075 scopus 로고    scopus 로고
    • An image model and segmentation algorithm for reflectance confocal images of in vivo cervical tissue
    • Luck B.L., Carlson K.D., Bovik A.C., Richards-Kortum R.R. An image model and segmentation algorithm for reflectance confocal images of in vivo cervical tissue. IEEE Trans. Image Process 2005, 14(9):1265-1276.
    • (2005) IEEE Trans. Image Process , vol.14 , Issue.9 , pp. 1265-1276
    • Luck, B.L.1    Carlson, K.D.2    Bovik, A.C.3    Richards-Kortum, R.R.4
  • 33
    • 33845572494 scopus 로고    scopus 로고
    • Computer-aided evaluation of protein expression in pathological tissue images
    • Ficarra E., Macii E. Computer-aided evaluation of protein expression in pathological tissue images. CBMS06 2006, 413-418.
    • (2006) CBMS06 , pp. 413-418
    • Ficarra, E.1    Macii, E.2
  • 35
    • 52949142262 scopus 로고    scopus 로고
    • Synergistic tissue counterstaining and image segmentation techniques for accurate, quantitative immunohistochemistry
    • Zehntner S.P., Chakravarty M.M., Bolovan J.R., Chan C., Bedell B.J. Synergistic tissue counterstaining and image segmentation techniques for accurate, quantitative immunohistochemistry. J. Histochem. Cytochem. 2008, 56(10):873-880.
    • (2008) J. Histochem. Cytochem. , vol.56 , Issue.10 , pp. 873-880
    • Zehntner, S.P.1    Chakravarty, M.M.2    Bolovan, J.R.3    Chan, C.4    Bedell, B.J.5
  • 36
    • 54249136925 scopus 로고    scopus 로고
    • Weakly supervised cell nuclei detection and segmentation on tissue microarrays of renal clear cell carcinoma
    • Fuchs T.J., Lange T., Wild P., Moch H., Buhmann J. Weakly supervised cell nuclei detection and segmentation on tissue microarrays of renal clear cell carcinoma. DAGM08, vol. 5096 2008, 173-182.
    • (2008) DAGM08, vol. 5096 , pp. 173-182
    • Fuchs, T.J.1    Lange, T.2    Wild, P.3    Moch, H.4    Buhmann, J.5
  • 37
    • 24944559785 scopus 로고    scopus 로고
    • Support vector machines: theory and applications
    • Wang L. Support vector machines: theory and applications. Stud. Fuzziness Soft Comput. 2005, 177.
    • (2005) Stud. Fuzziness Soft Comput. , vol.177
    • Wang, L.1
  • 38
    • 65549144451 scopus 로고    scopus 로고
    • Single-cell-based image analysis of high-throughput cell array screens for quantification of viral infection
    • Matula P., Kumar A., Worz I., Erfle H., Bartenschlager R., Eils R., Rohr K. Single-cell-based image analysis of high-throughput cell array screens for quantification of viral infection. Cytometry A 2009, 75(4):309-318.
    • (2009) Cytometry A , vol.75 , Issue.4 , pp. 309-318
    • Matula, P.1    Kumar, A.2    Worz, I.3    Erfle, H.4    Bartenschlager, R.5    Eils, R.6    Rohr, K.7
  • 39
    • 61849162858 scopus 로고    scopus 로고
    • Comparative analysis of methods for accurate recognition of cells through nuclei staining of Ki-67 in neuroblastoma and estrogen/progesterone status staining in breast cancer
    • Markiewicz T., Wisniewski P., Osowski S., Patera J., Kozlowski W., Koktysz R. Comparative analysis of methods for accurate recognition of cells through nuclei staining of Ki-67 in neuroblastoma and estrogen/progesterone status staining in breast cancer. Anal. Quant. Cytol. Histol. 2009, 31(1):49-62.
    • (2009) Anal. Quant. Cytol. Histol. , vol.31 , Issue.1 , pp. 49-62
    • Markiewicz, T.1    Wisniewski, P.2    Osowski, S.3    Patera, J.4    Kozlowski, W.5    Koktysz, R.6
  • 40
    • 0034890852 scopus 로고    scopus 로고
    • Quantification of histochemical staining by color deconvolution
    • Ruifrok A.C., Johnston D.A. Quantification of histochemical staining by color deconvolution. Anal. Quant. Cytol. Histol. 2001, 23(4):291-299.
    • (2001) Anal. Quant. Cytol. Histol. , vol.23 , Issue.4 , pp. 291-299
    • Ruifrok, A.C.1    Johnston, D.A.2
  • 41
    • 77955988798 scopus 로고    scopus 로고
    • Software,
    • G. Landini, Software, http://www.dentistry.bham.ac.uk/landinig/software/software.html.
    • Landini, G.1
  • 42
    • 77955994630 scopus 로고    scopus 로고
    • Automated discrimination of pathological regions in tissue images: unsupervised clustering vs supervised SVM classification
    • Di Cataldo S., Ficarra E., Macii E. Automated discrimination of pathological regions in tissue images: unsupervised clustering vs supervised SVM classification. Commun. Comput. Inform. Sci. 2008, 344-356.
    • (2008) Commun. Comput. Inform. Sci. , pp. 344-356
    • Di Cataldo, S.1    Ficarra, E.2    Macii, E.3
  • 45
    • 77955992611 scopus 로고    scopus 로고
    • ImageJ, U.S. National Institutes of Health, Bethesda, Maryland, USA, .
    • W.S. Rasband, ImageJ, U.S. National Institutes of Health, Bethesda, Maryland, USA, http://rsb.info.nih.gov/ij/.
    • Rasband, W.S.1
  • 46
    • 77955991640 scopus 로고    scopus 로고
    • Local Thresholding and Unsharp Masking by Median Filtering, .
    • R. Couture, Local Thresholding and Unsharp Masking by Median Filtering, http://www.aecom.yu.edu/aif/instructions/imagej/macros/local-threshold-unsharp-masking.txt.
    • Couture, R.1
  • 47
    • 77956004326 scopus 로고    scopus 로고
    • K-means Clustering, .
    • J. Sacha, K-means Clustering, http://ij-plugins.sourceforge.net/plugins/clustering/index.html.
    • Sacha, J.1
  • 48
    • 2242486565 scopus 로고    scopus 로고
    • Cell detection in micrographs of tissue sections using support vector machines
    • Twellmann T., Nattkemper T.W., Schubert W., Ritter H. Cell detection in micrographs of tissue sections using support vector machines. ICANN2001 2001, 79-88.
    • (2001) ICANN2001 , pp. 79-88
    • Twellmann, T.1    Nattkemper, T.W.2    Schubert, W.3    Ritter, H.4
  • 49
    • 15844413351 scopus 로고    scopus 로고
    • A comprehensive evaluation of multicategory classification methods for microarray gene expression cancer diagnosis
    • Statnikov A., Aliferis C.F., Tsamardinos I., Hardin D., Levy S. A comprehensive evaluation of multicategory classification methods for microarray gene expression cancer diagnosis. Bioinformatics 2005, 21(5):631-643.
    • (2005) Bioinformatics , vol.21 , Issue.5 , pp. 631-643
    • Statnikov, A.1    Aliferis, C.F.2    Tsamardinos, I.3    Hardin, D.4    Levy, S.5


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