-
1
-
-
0037123632
-
An expanding universe of noncoding RNAs
-
PMID:12016301
-
Storz G. An expanding universe of noncoding RNAs. Science 2002; 296:1260-3; PMID:12016301; http://dx.doi.org/10.1126/science.1072249.
-
(2002)
Science
, vol.296
, pp. 1260-1263
-
-
Storz, G.1
-
2
-
-
17644396621
-
Non-coding RNAs: Hope or hype?
-
PMID:15851066
-
Hüttenhofer A, Schattner P, Polacek N. Non-coding RNAs: hope or hype? Trends Genet 2005; 21:289-97; PMID:15851066; http://dx.doi.org/10.1016/j. tig.2005.03.007.
-
(2005)
Trends Genet
, vol.21
, pp. 289-297
-
-
Hüttenhofer, A.1
Schattner, P.2
Polacek, N.3
-
3
-
-
61749088917
-
Bacterial chromosome-encoded small regulatory RNAs
-
PMID:19207102
-
Brantl S. Bacterial chromosome-encoded small regulatory RNAs. Future Microbio l2009; 4:85-103; PMID:19207102; http://dx.doi.org/10.2217/17460913.4.1. 85.
-
(2009)
Future Microbiol
, vol.4
, pp. 85-103
-
-
Brantl, S.1
-
4
-
-
34848837296
-
miRNAs get an early start on translational silencing
-
PMID:17923084
-
Meister G. miRNAs get an early start on translational silencing. Cell 2007; 131:25-8; PMID:17923084; http://dx.doi.org/10.1016/j.cell.2007.09.021.
-
(2007)
Cell
, vol.131
, pp. 25-28
-
-
Meister, G.1
-
5
-
-
77955644289
-
Mammalian microRNAs predominantly act to decrease target mRNA levels
-
PMID:20703300
-
Guo H, Ingolia NT, Weissman JS, Bartel DP. Mammalian microRNAs predominantly act to decrease target mRNA levels. Nature 2010; 466:835-40; PMID:20703300; http://dx.doi.org/10.1038/nature09267.
-
(2010)
Nature
, vol.466
, pp. 835-840
-
-
Guo, H.1
Ingolia, N.T.2
Weissman, J.S.3
Bartel, D.P.4
-
6
-
-
77955902024
-
The widespread regulation of microRNA biogenesis, function and decay
-
PMID:20661255
-
Krol J, Loedige I, Filipowicz W. The widespread regulation of microRNA biogenesis, function and decay. Nat Rev Genet 2010; 11:597-610; PMID:20661255.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 597-610
-
-
Krol, J.1
Loedige, I.2
Filipowicz, W.3
-
7
-
-
77957306386
-
Regulatory RNAs derived from transfer RNA?
-
PMID:20719919
-
Pederson T. Regulatory RNAs derived from transfer RNA? RNA 2010; 16:1865-9; PMID:20719919; http://dx.doi.org/10.1261/rna.2266510.
-
(2010)
RNA
, vol.16
, pp. 1865-1869
-
-
Pederson, T.1
-
8
-
-
84857692673
-
Transfer RNA-derived fragments: Origins, processing and functions
-
PMID:21976287
-
Sobala A, Hutvagner G. Transfer RNA-derived fragments: origins, processing and functions. Wiley Interdiscip Rev RNA 2011; 2:853-62; PMID:21976287; http://dx.doi.org/10.1002/wrna.96.
-
(2011)
Wiley Interdiscip Rev RNA
, vol.2
, pp. 853-862
-
-
Sobala, A.1
Hutvagner, G.2
-
9
-
-
71549169628
-
Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs
-
PMID:19850906
-
Cole C, Sobala A, Lu C, Thatcher SR, Bowman A, Brown JW, et al. Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs. RNA 2009; 15:2147-60; PMID:19850906; http://dx.doi.org/10.1261/rna.1738409.
-
(2009)
RNA
, vol.15
, pp. 2147-2160
-
-
Cole, C.1
Sobala, A.2
Lu, C.3
Thatcher, S.R.4
Bowman, A.5
Brown, J.W.6
-
10
-
-
58749113430
-
A three-dimensional view of the molecular machinery of RNA interference
-
PMID:19158786
-
Jinek M, Doudna JA. A three-dimensional view of the molecular machinery of RNA interference. Nature 2009; 457:405-12; PMID:19158786; http://dx.doi.org/10.1038/nature07755.
-
(2009)
Nature
, vol.457
, pp. 405-412
-
-
Jinek, M.1
Doudna, J.A.2
-
11
-
-
0037013852
-
Assigning a function to a conserved group of proteins: The tRNA 3′-processing enzymes
-
PMID:12032089
-
Schiffer S, Rösch S, Marchfelder A. Assigning a function to a conserved group of proteins: the tRNA 3′-processing enzymes. EMBO J 2002; 21:2769-77; PMID:12032089; http://dx.doi.org/10.1093/emboj/21.11.2769.
-
(2002)
EMBO J
, vol.21
, pp. 2769-2777
-
-
Schiffer, S.1
Rösch, S.2
Marchfelder, A.3
-
12
-
-
64049106160
-
The making of tRNAs and more-RNase P and tRNase Z
-
PMID:19215776
-
Hartmann RK, Gössringer M, Späth B, Fischer S, Marchfelder A. The making of tRNAs and more-RNase P and tRNase Z. Prog Mol Biol Transl Sci 2009; 85:319-68; PMID:19215776; http://dx.doi.org/10.1016/S0079-6603(08)00808-8.
-
(2009)
Prog Mol Biol Transl Sci
, vol.85
, pp. 319-368
-
-
Hartmann, R.K.1
Gössringer, M.2
Späth, B.3
Fischer, S.4
Marchfelder, A.5
-
13
-
-
72749089855
-
A novel class of small RNAs: TRNA-derived RNA fragments (tRFs)
-
PMID:19933153
-
Lee YS, Shibata Y, Malhotra A, Dutta A. A novel class of small RNAs: tRNA-derived RNA fragments (tRFs). Genes Dev 2009; 23:2639-49; PMID:19933153; http://dx.doi.org/10.1101/gad.1837609.
-
(2009)
Genes Dev
, vol.23
, pp. 2639-2649
-
-
Lee, Y.S.1
Shibata, Y.2
Malhotra, A.3
Dutta, A.4
-
14
-
-
80053019485
-
Regulation by small RNAs in bacteria: Expanding frontiers
-
PMID:21925377
-
Storz G, Vogel J, Wassarman KM. Regulation by small RNAs in bacteria: expanding frontiers. Mol Cell 2011; 43:880-91; PMID:21925377; http://dx.doi.org/10.1016/j.molcel.2011.08.022.
-
(2011)
Mol Cell
, vol.43
, pp. 880-891
-
-
Storz, G.1
Vogel, J.2
Wassarman, K.M.3
-
15
-
-
84875092547
-
Archaea employ small RNAs as regulators
-
Hess WR, Marchfelder A, Eds. Wien: Springer
-
Schmitz R, Jäger D, Jellen-Ritter A, Babski J, Soppa J, Marchfelder A. Archaea employ small RNAs as regulators. In: Hess WR, Marchfelder A, Eds. Regulatory RNAs in Prokaryotes. Wien: Springer 2011; 131-45.
-
(2011)
Regulatory RNAs in Prokaryotes
, pp. 131-145
-
-
Schmitz, R.1
Jäger, D.2
Jellen-Ritter, A.3
Babski, J.4
Soppa, J.5
Marchfelder, A.6
-
16
-
-
84865822737
-
Small RNAs for Defence and Regulation in Archaea
-
In press
-
Marchfelder A, Fischer S, Brendel J, Stoll B, Maier LK, Jäger D, et al. Small RNAs for Defence and Regulation in Archaea. Extremophiles 2012; In press.
-
(2012)
Extremophiles
-
-
Marchfelder, A.1
Fischer, S.2
Brendel, J.3
Stoll, B.4
Maier, L.K.5
Jäger, D.6
-
17
-
-
0037188546
-
Noncoding RNA genes identified in AT-rich hyperthermophiles
-
PMID:12032319
-
Klein RJ, Misulovin Z, Eddy SR. Noncoding RNA genes identified in AT-rich hyperthermophiles. Proc Natl Acad Sci USA 2002; 99:7542-7; PMID:12032319; http://dx.doi.org/10.1073/pnas.112063799.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 7542-7547
-
-
Klein, R.J.1
Misulovin, Z.2
Eddy, S.R.3
-
18
-
-
0036567632
-
Searching for RNA genes using base-composition statistics
-
PMID:11972348
-
Schattner P. Searching for RNA genes using base-composition statistics. Nucleic Acids Res 2002; 30:2076-82; PMID:11972348; http://dx.doi.org/10.1093/ nar/30.9.2076.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 2076-2082
-
-
Schattner, P.1
-
19
-
-
0037188531
-
Identification of 86 candidates for small non-messenger RNAs from the archaeon Archaeoglobus fulgidus
-
PMID:12032318
-
Tang TH, Bachellerie JP, Rozhdestvensky T, Bortolin ML, Huber H, Drungowski M, et al. Identification of 86 candidates for small non-messenger RNAs from the archaeon Archaeoglobus fulgidus. Proc Natl Acad Sci USA 2002; 99:7536-41; PMID:12032318; http://dx.doi.org/10.1073/pnas.112047299.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 7536-7541
-
-
Tang, T.H.1
Bachellerie, J.P.2
Rozhdestvensky, T.3
Bortolin, M.L.4
Huber, H.5
Drungowski, M.6
-
20
-
-
0037082426
-
RNomics in Archaea reveals a further link between splicing of archaeal introns and rRNA processing
-
PMID:11842103
-
Tang TH, Rozhdestvensky TS, d'Orval BC, Bortolin ML, Huber H, Charpentier B, et al. RNomics in Archaea reveals a further link between splicing of archaeal introns and rRNA processing. Nucleic Acids Res 2002; 30:921-30; PMID:11842103; http://dx.doi.org/10.1093/nar/30.4.921.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 921-930
-
-
Tang, T.H.1
Rozhdestvensky, T.S.2
D'Orval, B.C.3
Bortolin, M.L.4
Huber, H.5
Charpentier, B.6
-
21
-
-
74949137952
-
A single-base resolution map of an archaeal transcriptome
-
PMID:19884261
-
Wurtzel O, Sapra R, Chen F, Zhu Y, Simmons BA, Sorek R. A single-base resolution map of an archaeal transcriptome. Genome Res 2010; 20:133-41; PMID:19884261; http://dx.doi.org/10.1101/gr.100396.109.
-
(2010)
Genome Res
, vol.20
, pp. 133-141
-
-
Wurtzel, O.1
Sapra, R.2
Chen, F.3
Zhu, Y.4
Simmons, B.A.5
Sorek, R.6
-
22
-
-
76049099044
-
Deep sequencing analysis of the Methanosarcina mazei Gö1 transcriptome in response to nitrogen availability
-
PMID:19996181
-
Jäger D, Sharma CM, Thomsen J, Ehlers C, Vogel J, Schmitz RA. Deep sequencing analysis of the Methanosarcina mazei Gö1 transcriptome in response to nitrogen availability. Proc Natl Acad Sci USA 2009; 106:21878-82; PMID:19996181; http://dx.doi.org/10.1073/pnas.0909051106.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 21878-21882
-
-
Jäger, D.1
Sharma, C.M.2
Thomsen, J.3
Ehlers, C.4
Vogel, J.5
Schmitz, R.A.6
-
23
-
-
77954362415
-
The complete genome sequence of Haloferax volcanii DS2, a model archaeon
-
PMID:20333302
-
Hartman AL, Norais C, Badger JH, Delmas S, Haldenby S, Madupu R, et al. The complete genome sequence of Haloferax volcanii DS2, a model archaeon. PLoS One 2010; 5:9605; PMID:20333302; http://dx.doi.org/10.1371/journal.pone.0009605.
-
(2010)
PLoS One
, vol.5
, pp. 9605
-
-
Hartman, A.L.1
Norais, C.2
Badger, J.H.3
Delmas, S.4
Haldenby, S.5
Madupu, R.6
-
24
-
-
10644271631
-
Archaeal genetics - The third way
-
PMID:15630422
-
Allers T, Mevarech M. Archaeal genetics - the third way. Nat Rev Genet 2005; 6:58-73; PMID:15630422; http://dx.doi.org/10.1038/nrg1504.
-
(2005)
Nat Rev Genet
, vol.6
, pp. 58-73
-
-
Allers, T.1
Mevarech, M.2
-
25
-
-
79958073627
-
Model organisms for genetics in the domain Archaea: Methanogens, halophiles, Thermococcales and Sulfolobales
-
PMID:21265868
-
Leigh JA, Albers SV, Atomi H, Allers T. Model organisms for genetics in the domain Archaea: methanogens, halophiles, Thermococcales and Sulfolobales. FEMS Microbiol Rev 2011; 35:577-608; PMID:21265868; http://dx.doi.org/10.1111/j. 1574-6976.2011.00265.x.
-
(2011)
FEMS Microbiol Rev
, vol.35
, pp. 577-608
-
-
Leigh, J.A.1
Albers, S.V.2
Atomi, H.3
Allers, T.4
-
26
-
-
84855612043
-
Functional genomic and advanced genetic studies reveal novel insights into the metabolism, regulation and biology of Haloferax volcanii
-
PMID:22190865
-
Soppa J. Functional genomic and advanced genetic studies reveal novel insights into the metabolism, regulation and biology of Haloferax volcanii. Archaea 2011; 2011:602408; PMID:22190865; http://dx.doi.org/10.1155/2011/602408.
-
(2011)
Archaea
, vol.2011
, pp. 602408
-
-
Soppa, J.1
-
27
-
-
59749087476
-
Small RNAs of the halophilicarchaeon Haloferax volcanii
-
PMID:19143617
-
Soppa J, Straub J, Brenneis M, Jellen-Ritter A, Heyer R, Fischer S, et al. Small RNAs of the halophilicarchaeon Haloferax volcanii. Biochem Soc Trans 2009; 37:133-6; PMID:19143617; http://dx.doi.org/10.1042/BST0370133.
-
(2009)
Biochem Soc Trans
, vol.37
, pp. 133-136
-
-
Soppa, J.1
Straub, J.2
Brenneis, M.3
Jellen-Ritter, A.4
Heyer, R.5
Fischer, S.6
-
28
-
-
67650489281
-
Small RNAs in haloarchaea: Identification, differential expression and biological function
-
PMID:19333006
-
Straub J, Brenneis M, Jellen-Ritter A, Heyer R, Soppa J, Marchfelder A. Small RNAs in haloarchaea: identification, differential expression and biological function. RNA Biol 2009; 6:281-92; PMID:19333006; http://dx.doi.org/10.4161/rna.6.3.8357.
-
(2009)
RNA Biol
, vol.6
, pp. 281-292
-
-
Straub, J.1
Brenneis, M.2
Jellen-Ritter, A.3
Heyer, R.4
Soppa, J.5
Marchfelder, A.6
-
29
-
-
79551502747
-
Regulatory RNAs in Haloferax volcanii
-
PMID:21265765
-
Fischer S, Benz J, Späth B, Jellen-Ritter A, Heyer R, Dörr M, et al. Regulatory RNAs in Haloferax volcanii. Biochem Soc Trans 2011; 39:159-62; PMID:21265765; http://dx.doi.org/10.1042/BST0390159.
-
(2011)
Biochem Soc Trans
, vol.39
, pp. 159-162
-
-
Fischer, S.1
Benz, J.2
Späth, B.3
Jellen-Ritter, A.4
Heyer, R.5
Dörr, M.6
-
30
-
-
80051669808
-
Bioinformatic prediction and experimental verification of sRNAs in the haloarchaeon Haloferax volcanii.
-
Epub ahead of print. PMID:21712649
-
Babski J, Tjaden B, Voss B, Jellen-Ritter A, Marchfelder A, Hess WR, et al. Bioinformatic prediction and experimental verification of sRNAs in the haloarchaeon Haloferax volcanii. [Epub ahead of print]. RNA Biol 2011; 8; PMID:21712649; http://dx.doi.org/10.4161/rna.8.5.16039.
-
(2011)
RNA Biol
, vol.8
-
-
Babski, J.1
Tjaden, B.2
Voss, B.3
Jellen-Ritter, A.4
Marchfelder, A.5
Hess, W.R.6
-
31
-
-
0037309062
-
Development of a gene knockout system for the halophilicarchaeon Haloferax volcanii by use of the pyrE gene
-
PMID:12533452
-
Bitan-Banin G, Ortenberg R, Mevarech M. Development of a gene knockout system for the halophilicarchaeon Haloferax volcanii by use of the pyrE gene. J Bacteriol 2003; 185:772-8; PMID:12533452; http://dx.doi.org/10.1128/JB.185.3. 772-8.2003.
-
(2003)
J Bacteriol
, vol.185
, pp. 772-778
-
-
Bitan-Banin, G.1
Ortenberg, R.2
Mevarech, M.3
-
32
-
-
2342625231
-
Development of additional selectable markers for the halophilicarchaeon Haloferax volcanii based on the leuB and trpA genes
-
PMID:14766575
-
Allers T, Ngo HP, Mevarech M, Lloyd RG. Development of additional selectable markers for the halophilicarchaeon Haloferax volcanii based on the leuB and trpA genes. Appl Environ Microbiol 2004; 70:943-53; PMID:14766575; http://dx.doi.org/10.1128/AEM.70.2.943-53.2004.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 943-953
-
-
Allers, T.1
Ngo, H.P.2
Mevarech, M.3
Lloyd, R.G.4
-
33
-
-
77954269050
-
Freiburg RNA Tools: A web server integrating INTARNA, EXPARNA and LOCARNA
-
PMID:20444875
-
Smith C, Heyne S, Richter AS, Will S, Backofen R. Freiburg RNA Tools: a web server integrating INTARNA, EXPARNA and LOCARNA. Nucleic Acids Res 2010; 38:373-7; PMID:20444875; http://dx.doi.org/10.1093/nar/gkq316.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 373-377
-
-
Smith, C.1
Heyne, S.2
Richter, A.S.3
Will, S.4
Backofen, R.5
-
34
-
-
77749304005
-
Improved strains and plasmid vectors for conditional overexpression of His-tagged proteins in Haloferax volcanii
-
PMID:20097827
-
Allers T, Barak S, Liddell S, Wardell K, Mevarech M. Improved strains and plasmid vectors for conditional overexpression of His-tagged proteins in Haloferax volcanii. Appl Environ Microbiol 2010; 76:1759-69; PMID:20097827; http://dx.doi.org/10.1128/AEM.02670-09.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 1759-1769
-
-
Allers, T.1
Barak, S.2
Liddell, S.3
Wardell, K.4
Mevarech, M.5
-
35
-
-
0001882075
-
A rapid procedure for the isolation of RNA from Haloferax volcanii
-
Robb FT, Place AR, Sowers KR, Schreier HJ, DasSarma S, Fleischmann EM, Eds. New York: Cold Spring Harbour Press
-
Nieuwlandt DT, Palmer JR, Armbruster DT, Kuo YP, Oda W, Daniels CJ. A rapid procedure for the isolation of RNA from Haloferax volcanii. In: Robb FT, Place AR, Sowers KR, Schreier HJ, DasSarma S, Fleischmann EM, Eds. Archaea: A laboratory manual. New York: Cold Spring Harbour Press 1995; 161.
-
(1995)
Archaea: A Laboratory Manual
, pp. 161
-
-
Nieuwlandt, D.T.1
Palmer, J.R.2
Armbruster, D.T.3
Kuo, Y.P.4
Oda, W.5
Daniels, C.J.6
-
37
-
-
42449149147
-
Maturation of the 5S rRNA 5′ end is catalyzed in vitro by the endonuclease tRNase Z in the archaeon H. volcanii
-
PMID:18369184
-
Hölzle A, Fischer S, Heyer R, Schütz S, Zacharias M, Walther P, et al. Maturation of the 5S rRNA 5′ end is catalyzed in vitro by the endonuclease tRNase Z in the archaeon H. volcanii. RNA 2008; 14:928-37; PMID:18369184; http://dx.doi.org/10.1261/rna.933208.
-
(2008)
RNA
, vol.14
, pp. 928-937
-
-
Hölzle, A.1
Fischer, S.2
Heyer, R.3
Schütz, S.4
Zacharias, M.5
Walther, P.6
-
38
-
-
80051672003
-
Phenotyping in the archaea: Optimization of growth parameters and analysis of mutants of Haloferax volcanii
-
PMID:21692831
-
Jantzer K, Zerulla K, Soppa J. Phenotyping in the archaea: optimization of growth parameters and analysis of mutants of Haloferax volcanii. FEMS Microbiol Lett 2011; 322:123-30; PMID:21692831; http://dx.doi.org/10.1111/j. 1574-6968.2011.02341.x.
-
(2011)
FEMS Microbiol Lett
, vol.322
, pp. 123-130
-
-
Jantzer, K.1
Zerulla, K.2
Soppa, J.3
-
39
-
-
0038693118
-
Construction and usage of a onefold-coverage shotgun DNA microarray to characterize the metabolism of the archaeon Haloferax volcanii
-
PMID:12753198
-
Zaigler A, Schuster SC, Soppa J. Construction and usage of a onefold-coverage shotgun DNA microarray to characterize the metabolism of the archaeon Haloferax volcanii. Mol Microbiol 2003; 48:1089-105; PMID:12753198; http://dx.doi.org/10.1046/j.1365-2958.2003.03497.x.
-
(2003)
Mol Microbiol
, vol.48
, pp. 1089-1105
-
-
Zaigler, A.1
Schuster, S.C.2
Soppa, J.3
-
40
-
-
38149126389
-
Genome-wide analysis of growth phase-dependent translational and transcriptional regulation in halophilicarchaea
-
PMID:17997854
-
Lange C, Zaigler A, Hammelmann M, Twellmeyer J, Raddatz G, Schuster SC, et al. Genome-wide analysis of growth phase-dependent translational and transcriptional regulation in halophilicarchaea. BMC Genomics 2007; 8:415; PMID:17997854; http://dx.doi.org/10.1186/1471-2164-8-415.
-
(2007)
BMC Genomics
, vol.8
, pp. 415
-
-
Lange, C.1
Zaigler, A.2
Hammelmann, M.3
Twellmeyer, J.4
Raddatz, G.5
Schuster, S.C.6
-
41
-
-
84875100426
-
-
www.haloarchaea.com/resources/halohandbook/Halohandbook-2008-v7.pdf.
-
-
-
|