-
1
-
-
77953635299
-
Biochemical principles of small RNA pathways
-
Liu Q, Paroo Z. Biochemical principles of small RNA pathways. Annu Rev Biochem 2010; 79:295-319.
-
(2010)
Annu Rev Biochem
, vol.79
, pp. 295-319
-
-
Liu, Q.1
Paroo, Z.2
-
2
-
-
69249213935
-
Lesser known relatives of miRNA
-
Choudhuri S. Lesser known relatives of miRNA. Biochem Biophys Res Commun 2009; 388:177-80.
-
(2009)
Biochem Biophys Res Commun
, vol.388
, pp. 177-180
-
-
Choudhuri, S.1
-
3
-
-
34848828540
-
Small RNAs: Regulators and guardians of the genome
-
DOI 10.1002/jcp.21230
-
Chu CY, Rana TM. Small RNAs: regulators and guardians of the genome. J Cell Physiol 2007; 213:412-9. (Pubitemid 47509721)
-
(2007)
Journal of Cellular Physiology
, vol.213
, Issue.2
, pp. 412-419
-
-
Chu, C.-Y.1
Rana, T.M.2
-
4
-
-
71549126189
-
Activation of gene expression by small RNA
-
Fröhlich KS, Vogel J. Activation of gene expression by small RNA. Curr Opin Microbiol 2009; 12:674-82.
-
(2009)
Curr Opin Microbiol
, vol.12
, pp. 674-682
-
-
Fröhlich, K.S.1
Vogel, J.2
-
5
-
-
58149139033
-
A rough guide to the non-coding RNA world of Salmonella
-
Vogel J. A rough guide to the non-coding RNA world of Salmonella. Mol Microbiol 2009; 71:1-11.
-
(2009)
Mol Microbiol
, vol.71
, pp. 1-11
-
-
Vogel, J.1
-
6
-
-
34250725542
-
Identification of bacterial small non-coding RNAs: Experimental approaches
-
DOI 10.1016/j.mib.2007.05.003, PII S1369527407000501
-
Altuvia S. Identification of bacterial small non-coding RNAs: experimental approaches. Curr Opin Microbiol 2007; 10:257-61. (Pubitemid 46963080)
-
(2007)
Current Opinion in Microbiology
, vol.10
, Issue.3
, pp. 257-261
-
-
Altuvia, S.1
-
7
-
-
20644462362
-
Micros for microbes: Non-coding regulatory RNAs in bacteria
-
DOI 10.1016/j.tig.2005.05.008, PII S0168952505001381
-
Gottesman S. Micros for microbes: non-coding regulatory RNAs in bacteria. Trends Genet 2005; 21:399-404. (Pubitemid 40835726)
-
(2005)
Trends in Genetics
, vol.21
, Issue.7
, pp. 399-404
-
-
Gottesman, S.1
-
8
-
-
4344682527
-
The small RNA regulators of Escherichia coli: Roles and mechanisms
-
DOI 10.1146/annurev.micro.58.030603.123841
-
Gottesman S. The small RNA regulators of Escherichia coli: roles and mechanisms*. Annu Rev Microbiol 2004; 58:303-28. (Pubitemid 39551989)
-
(2004)
Annual Review of Microbiology
, vol.58
, pp. 303-328
-
-
Gottesman, S.1
-
9
-
-
1842453716
-
Controlling mRNA stability and translation with small, noncoding RNAs
-
DOI 10.1016/j.mib.2004.02.015, PII S1369527404000281
-
Storz G, Opdyke JA, Zhang A. Controlling mRNA stability and translation with small, noncoding RNAs. Curr Opin Microbiol 2004; 7:140-4. (Pubitemid 38447046)
-
(2004)
Current Opinion in Microbiology
, vol.7
, Issue.2
, pp. 140-144
-
-
Storz, G.1
Opdyke, J.A.2
Zhang, A.3
-
10
-
-
13444267841
-
NONCODE: An integrated knowledge database of non-coding RNAs
-
Liu C, Bai B, Skogerbo G, Cai L, Deng W, Zhang Y, et al. NONCODE: an integrated knowledge database of non-coding RNAs. Nucleic Acids Res 2005; 33:112-5.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 112-115
-
-
Liu, C.1
Bai, B.2
Skogerbo, G.3
Cai, L.4
Deng, W.5
Zhang, Y.6
-
11
-
-
85011938652
-
Bateman A
-
DOI: 10.1093/nar/gkn766
-
Gardner PP, Daub J, Tate JG, Nawrocki EP, Kolbe DL, Lindgreen S, et al. Bateman A. Nucleic Acids Research 2008; DOI: 10.1093/nar/gkn766.
-
(2008)
Nucleic Acids Research
-
-
Gardner, P.P.1
Daub, J.2
Tate, J.G.3
Nawrocki, E.P.4
Kolbe, D.L.5
Lindgreen, S.6
-
13
-
-
85011941303
-
Computational prediction of sRNAs and their targets in bacteria
-
Backofen R, Hess WR. Computational prediction of sRNAs and their targets in bacteria. RNA Biol 2010; 7:33-42.
-
(2010)
RNA Biol
, vol.7
, pp. 33-42
-
-
Backofen, R.1
Hess, W.R.2
-
14
-
-
77951204983
-
Prediction of small non-coding RNA in bacterial genomes using support vector machines
-
Chang T, Wu L, Lin J, Huang H, Liu B, Cheng K, Horng J. Prediction of small non-coding RNA in bacterial genomes using support vector machines. EXPERT SYST APPL 2010; 37:5549-57.
-
(2010)
EXPERT SYST APPL
, vol.37
, pp. 5549-5557
-
-
Chang, T.1
Wu, L.2
Lin, J.3
Huang, H.4
Liu, B.5
Cheng, K.6
Horng, J.7
-
15
-
-
36448976216
-
Prediction of small, noncoding RNAs in bacteria using heterogeneous data
-
DOI 10.1007/s00285-007-0079-5, RNA: Advances in algorithms and mathematics related to the structural biology of RNA
-
Tjaden B. Prediction of small, noncoding RNAs in bacteria using heterogeneous data. J Math Biol 2008; 56:183-200. (Pubitemid 350172190)
-
(2008)
Journal of Mathematical Biology
, vol.56
, Issue.1-2
, pp. 183-200
-
-
Tjaden, B.1
-
16
-
-
52449093583
-
High-throughput, kingdom-wide prediction and annotation of bacterial non-coding RNAs
-
Livny J, Teonadi H, Livny M, Waldor MK. High-throughput, kingdom-wide prediction and annotation of bacterial non-coding RNAs. PLoS One 2008; 3:3197.
-
(2008)
PLoS One
, vol.3
, pp. 3197
-
-
Livny, J.1
Teonadi, H.2
Livny, M.3
Waldor, M.K.4
-
17
-
-
34548679810
-
Computational approaches for the discovery of bacterial small RNAs
-
DOI 10.1016/j.ymeth.2007.04.001, PII S1046202307000837
-
Kulkarni RV, Kulkarni PR. Computational approaches for the discovery of bacterial small RNAs. Methods 2007; 43:131-9. (Pubitemid 47419356)
-
(2007)
Methods
, vol.43
, Issue.2
, pp. 131-139
-
-
Kulkarni, R.V.1
Kulkarni, P.R.2
-
18
-
-
0141850376
-
Intergenic sequence inspector: Searching and identifying bacterial RNAs
-
DOI 10.1093/bioinformatics/btg235
-
Pichon C, Felden B. Intergenic sequence inspector: searching and identifying bacterial RNAs. Bioinformatics 2003; 19:1707-9. (Pubitemid 37121160)
-
(2003)
Bioinformatics
, vol.19
, Issue.13
, pp. 1707-1709
-
-
Pichon, C.1
Felden, B.2
-
19
-
-
0036271043
-
A bioinformatics based approach to discover small RNA genes in the Escherichia coli genome
-
DOI 10.1016/S0303-2647(02)00013-8, PII S0303264702000138
-
Chen S, Lesnik EA, Hall TA, Sampath R, Griffey RH, Ecker DJ, Blyn LB. A bioinformatics based approach to discover small RNA genes in the Escherichia coli genome. Biosystems 2002; 65:157-77. (Pubitemid 34586776)
-
(2002)
BioSystems
, vol.65
, Issue.2-3
, pp. 157-177
-
-
Chen, S.1
Lesnik, E.A.2
Hall, T.A.3
Sampath, R.4
Griffey, R.H.5
Ecker, D.J.6
Blyn, L.B.7
-
20
-
-
60149089144
-
Regulatory RNAs in Bacteria
-
Waters LS, Storz G. Regulatory RNAs in Bacteria. Cell 2009; 136:615-28.
-
(2009)
Cell
, vol.136
, pp. 615-628
-
-
Waters, L.S.1
Storz, G.2
-
21
-
-
68249156618
-
Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation
-
Pfeiffer V, Papenfort K, Lucchini S, Hinton JC, Vogel J. Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation. Nat Struct Mol Biol 2009; 16:840-6.
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 840-846
-
-
Pfeiffer, V.1
Papenfort, K.2
Lucchini, S.3
Hinton, J.C.4
Vogel, J.5
-
22
-
-
0034697257
-
Homologs of small nucleolar RNAs in Archaea
-
DOI 10.1126/science.288.5465.517
-
Omer AD, Lowe TM, Russell AG, Ebhardt H, Eddy SR, Dennis PP. Homologs of small nucleolar RNAs in Archaea. Science 2000; 288:517-22. (Pubitemid 30236034)
-
(2000)
Science
, vol.288
, Issue.5465
, pp. 517-522
-
-
Omer, A.D.1
Lowe, T.M.2
Russell, A.C.3
Ebhardt, H.4
Eddy, S.R.5
Dennis, P.P.6
-
23
-
-
0034615782
-
Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: Lessons from the pyrococcus genomes
-
Gaspin C, Cavaille J, Erauso G, Bachellerie JP. Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: lessons from the Pyrococcus genomes. J Mol Biol 2000; 297:895-906.
-
(2000)
J Mol Biol
, vol.297
, pp. 895-906
-
-
Gaspin, C.1
Cavaille, J.2
Erauso, G.3
Bachellerie, J.P.4
-
24
-
-
43349108346
-
Combined in silico and experimental identification of the Pyrococcus abyssi H/ACA sRNAs and their target sites in ribosomal RNAs
-
DOI 10.1093/nar/gkn077
-
Muller S, Leclerc F, Behm-Ansmant I, Fourmann JB, Charpentier B, Branlant C. Combined in silico and experimental identification of the Pyrococcus abyssi H/ACA sRNAs and their target sites in ribosomal RNAs. Nucleic Acids Res 2008; 36:2459-75. (Pubitemid 351659563)
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.8
, pp. 2459-2475
-
-
Muller, S.1
Leclerc, F.2
Behm-Ansmant, I.3
Fourmann, J.-B.4
Charpentier, B.5
Branlant, C.6
-
25
-
-
0036567632
-
Searching for RNA genes using base-composition statistics
-
Schattner P. Searching for RNA genes using base-composition statistics. Nucleic Acids Res 2002; 30:2076-82. (Pubitemid 34537606)
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.9
, pp. 2076-2082
-
-
Schattner, P.1
-
27
-
-
0037188531
-
Identification of 86 candidates for small non-messenger RNAs from the archaeon Archaeoglobus fulgidus
-
DOI 10.1073/pnas.112047299
-
Tang TH, Bachellerie JP, Rozhdestvensky T, Bortolin ML, Huber H, Drungowski M, et al. Identification of 86 candidates for small non-messenger RNAs from the archaeon Archaeoglobus fulgidus. Proc Natl Acad Sci USA 2002; 99:7536-41. (Pubitemid 34568726)
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, Issue.11
, pp. 7536-7541
-
-
Tang, T.-H.1
Bachellerie, J.-P.2
Rozhdestvensky, T.3
Bortolin, M.-L.4
Huber, H.5
Drungowski, M.6
Elge, T.7
Brosius, J.8
Huttenhofer, A.9
-
28
-
-
13144269598
-
Identification of novel non-coding RNAs as potential antisense regulators in the archaeon Sulfolobus solfataricus
-
DOI 10.1111/j.1365-2958.2004.04428.x
-
Tang TH, Polacek N, Zywicki M, Huber H, Brugger K, Garrett R, et al. Identification of novel non-coding RNAs as potential antisense regulators in the archaeon Sulfolobus solfataricus. Mol Microbiol 2005; 55:469-81. (Pubitemid 40179381)
-
(2005)
Molecular Microbiology
, vol.55
, Issue.2
, pp. 469-481
-
-
Tang, T.-H.1
Polacek, N.2
Zywicki, M.3
Huber, H.4
Brugger, K.5
Garrett, R.6
Bachellerie, J.P.7
Huttenhofer, A.8
-
29
-
-
76049099044
-
Deep sequencing analysis of the Methanosarcina mazei Gö1 transcriptome in response to nitrogen availability
-
Jäger D, Sharma CM, Thomsen J, Ehlers C, Vogel J, Schmitz RA. Deep sequencing analysis of the Methanosarcina mazei Gö1 transcriptome in response to nitrogen availability. Proc Natl Acad Sci USA 2009; 106:21878-82.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 21878-21882
-
-
Jäger, D.1
Sharma, C.M.2
Thomsen, J.3
Ehlers, C.4
Vogel, J.5
Schmitz, R.A.6
-
30
-
-
59749087476
-
Small RNAs of the halophilic archaeon Haloferax volcanii
-
Soppa J, Straub J, Brenneis M, Jellen-Ritter A, Heyer R, Fischer S, et al. Small RNAs of the halophilic archaeon Haloferax volcanii. Biochem Soc Trans 2009; 37:133-6.
-
(2009)
Biochem Soc Trans
, vol.37
, pp. 133-136
-
-
Soppa, J.1
Straub, J.2
Brenneis, M.3
Jellen-Ritter, A.4
Heyer, R.5
Fischer, S.6
-
31
-
-
67650489281
-
Small RNAs in haloarchaea: Identification, differential expression and biological function
-
Straub J, Brenneis M, Jellen-Ritter A, Heyer R, Soppa J, Marchfelder A. Small RNAs in haloarchaea: Identification, differential expression and biological function. RNA Biol 2009; 6:281-92.
-
(2009)
RNA Biol
, vol.6
, pp. 281-292
-
-
Straub, J.1
Brenneis, M.2
Jellen-Ritter, A.3
Heyer, R.4
Soppa, J.5
Marchfelder, A.6
-
32
-
-
2342625231
-
Development of Additional Selectable Markers for the Halophilic Archaeon Haloferax volcanii Based on the leuB and trpA Genes
-
DOI 10.1128/AEM.70.2.943-953.2004
-
Allers T, Ngo HP, Mevarech M, Lloyd RG. Development of additional selectable markers for the halophilic archaeon Haloferax volcanii based on the leuB and trpA genes. Appl Environ Microbiol 2004; 70:943-53. (Pubitemid 38568219)
-
(2004)
Applied and Environmental Microbiology
, vol.70
, Issue.2
, pp. 943-953
-
-
Allers, T.1
Ngo, H.-P.2
Mevarech, M.3
Lloyd, R.G.4
-
33
-
-
50549098705
-
Optimized generation of vectors for the construction of Haloferax volcanii deletion mutants
-
Hammelmann M, Soppa J. Optimized generation of vectors for the construction of Haloferax volcanii deletion mutants. J Microbiol Methods 2008; 75:201-4.
-
(2008)
J Microbiol Methods
, vol.75
, pp. 201-204
-
-
Hammelmann, M.1
Soppa, J.2
-
34
-
-
0038693118
-
Construction and usage of a onefold-coverage shotgun dna microarray to characterize the metabolism of the archaeon Haloferax volcanii
-
DOI 10.1046/j.1365-2958.2003.03497.x
-
Zaigler A, Schuster SC, Soppa J. Construction and usage of a onefold-coverage shotgun DNA microarray to characterize the metabolism of the archaeon Haloferax volcanii. Mol Microbiol 2003; 48:1089-105. (Pubitemid 36628271)
-
(2003)
Molecular Microbiology
, vol.48
, Issue.4
, pp. 1089-1105
-
-
Zaigler, A.1
Schuster, S.C.2
Soppa, J.3
-
35
-
-
49749148435
-
Genomics and functional genomics with haloarchaea
-
Soppa J, Baumann A, Brenneis M, Dambeck M, Hering O, Lange C. Genomics and functional genomics with haloarchaea. Arch Microbiol 2008; 190:197-215.
-
(2008)
Arch Microbiol
, vol.190
, pp. 197-215
-
-
Soppa, J.1
Baumann, A.2
Brenneis, M.3
Dambeck, M.4
Hering, O.5
Lange, C.6
-
37
-
-
13844307729
-
Improvement of two-dimensional gel electrophoresis proteome maps of the haloarchaeon Haloferax volcanii
-
DOI 10.1002/pmic.200400950
-
Karadzic IM, Maupin-Furlow JA. Improvement of two-dimensional gel electrophoresis proteome maps of the haloarchaeon Haloferax volcanii. Proteomics 2005; 5:354-9. (Pubitemid 40262051)
-
(2005)
Proteomics
, vol.5
, Issue.2
, pp. 354-359
-
-
Karadzic, I.M.1
Maupin-Furlow, J.A.2
-
38
-
-
77749304005
-
Improved strains and plasmid vectors for conditional overexpression of His-tagged proteins in Haloferax volcanii
-
Allers T, Barak S, Liddell S, Wardell K, Mevarech M. Improved strains and plasmid vectors for conditional overexpression of His-tagged proteins in Haloferax volcanii. Appl Environ Microbiol 2010; 76:1759-69.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 1759-1769
-
-
Allers, T.1
Barak, S.2
Liddell, S.3
Wardell, K.4
Mevarech, M.5
-
39
-
-
36148999809
-
Characterization of a tightly controlled promoter of the halophilic archaeon Haloferax volcanii and its use in the analysis of the essential cct1 gene
-
DOI 10.1111/j.1365-2958.2007.05980.x
-
Large A, Stamme C, Lange C, Duan Z, Allers T, Soppa J, Lund PA. Characterization of a tightly controlled promoter of the halophilic archaeon Haloferax volcanii and its use in the analysis of the essential cct1 gene. Mol Microbiol 2007; 66:1092-106. (Pubitemid 350115018)
-
(2007)
Molecular Microbiology
, vol.66
, Issue.5
, pp. 1092-1106
-
-
Large, A.1
Stamme, C.2
Lange, C.3
Duan, Z.4
Allers, T.5
Soppa, J.6
Lund, P.A.7
-
40
-
-
10444253995
-
Analysis of proteasome-dependent proteolysis in Haloferax volcanii cells, using short-lived green fluorescent proteins
-
DOI 10.1128/AEM.70.12.7530-7538.2004
-
Reuter CJ, Maupin-Furlow JA. Analysis of proteasome-dependent proteolysis in Haloferax volcanii cells, using short-lived green fluorescent proteins. Appl Environ Microbiol 2004; 70:7530-8. (Pubitemid 39643820)
-
(2004)
Applied and Environmental Microbiology
, vol.70
, Issue.12
, pp. 7530-7538
-
-
Reuter, C.J.1
Maupin-Furlow, J.A.2
-
41
-
-
37749051212
-
Experimental Characterization of Cis-Acting Elements Important for Translation and Transcription in Halophilic Archaea
-
Brenneis M, Hering O, Lange C, Soppa J. Experimental Characterization of Cis-Acting Elements Important for Translation and Transcription in Halophilic Archaea. PLoS Genet 2007; 3:229.
-
(2007)
PLoS Genet
, vol.3
, pp. 229
-
-
Brenneis, M.1
Hering, O.2
Lange, C.3
Soppa, J.4
-
42
-
-
58749087362
-
Small non-coding RNAs in Streptomyces coelicolor
-
Swiercz JP, Hindra, Bobek J, Bobek J, Haiser HJ, Di Berardo C, et al. Small non-coding RNAs in Streptomyces coelicolor. Nucleic Acids Res 2008; 36:7240-51.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 7240-7251
-
-
Swiercz, J.P.1
Hindra2
Bobek, J.3
Bobek, J.4
Haiser, H.J.5
Di Berardo, C.6
-
43
-
-
78650964768
-
Computational prediction and transcriptional analysis of sRNAs in Nitrosomonas europaea
-
Gvakharia BO, Tjaden B, Vajrala N, Sayavedra-Soto LA, Arp DJ. Computational prediction and transcriptional analysis of sRNAs in Nitrosomonas europaea. FEMS Microbiol Lett 2010; 312:46-54.
-
(2010)
FEMS Microbiol Lett
, vol.312
, pp. 46-54
-
-
Gvakharia, B.O.1
Tjaden, B.2
Vajrala, N.3
Sayavedra-Soto, L.A.4
Arp, D.J.5
-
44
-
-
47149088683
-
Molecular signature of hypersaline adaptation: Insights from genome and proteome composition of halophilic prokaryotes
-
Paul S, Bag SK, Das S, Harvill ET, Dutta C. Molecular signature of hypersaline adaptation: insights from genome and proteome composition of halophilic prokaryotes. Genome Biol 2008; 9:70.
-
(2008)
Genome Biol
, vol.9
, pp. 70
-
-
Paul, S.1
Bag, S.K.2
Das, S.3
Harvill, E.T.4
Dutta, C.5
-
45
-
-
63749124071
-
Biocomputational prediction of non-coding RNAs in model cyanobacteria
-
Voss B, Georg J, Schon V, Ude S, Hess WR. Biocomputational prediction of non-coding RNAs in model cyanobacteria. BMC Genomics 2009; 10:123.
-
(2009)
BMC Genomics
, vol.10
, pp. 123
-
-
Voss, B.1
Georg, J.2
Schon, V.3
Ude, S.4
Hess, W.R.5
-
46
-
-
70350443043
-
D-xylose degradation pathway in the halophilic archaeon Haloferax volcanii
-
Johnson U, Dambeck M, Zaiß H, Fuhrer T, Soppa J, Sauer U, Schönheit P. D-xylose degradation pathway in the halophilic archaeon Haloferax volcanii. J Biol Chem 2009; 284:27290-303.
-
(2009)
J Biol Chem
, vol.284
, pp. 27290-27303
-
-
Johnson, U.1
Dambeck, M.2
Zaiß, H.3
Fuhrer, T.4
Soppa, J.5
Sauer, U.6
Schönheit, P.7
-
47
-
-
49749083458
-
Characterization of a Haloferax volcanii member of the enolase superfamily: deletion mutant construction, expression analysis and transcriptom comparison
-
Dambeck M, Soppa J. Characterization of a Haloferax volcanii member of the enolase superfamily: deletion mutant construction, expression analysis and transcriptom comparison. Arch Microbiol 2008; 190:341-53.
-
(2008)
Arch Microbiol
, vol.190
, pp. 341-353
-
-
Dambeck, M.1
Soppa, J.2
-
48
-
-
34248227413
-
The low molecular weight proteome of Halobacterium salinarum
-
DOI 10.1021/pr060634q
-
Klein C, Aivaliotis M, Olsen JV, Falb M, Besir H, Scheffer B, et al. The low molecular weight proteome of Halobacterium salinarum. J Proteome Res 2007; 6:1510-8. (Pubitemid 46724049)
-
(2007)
Journal of Proteome Research
, vol.6
, Issue.4
, pp. 1510-1518
-
-
Klein, C.1
Aivaliotis, M.2
Olsen, J.V.3
Falb, M.4
Besir, H.5
Scheffer, B.6
Bisle, B.7
Tebbe, A.8
Konstantinidis, K.9
Siedler, F.10
Pfeiffer, F.11
Mann, M.12
Oesterhelt, D.13
-
49
-
-
73849144298
-
Small stress response proteins in escherichia coli: Proteins missed by classical proteomic studies
-
Hemm MR, Paul BJ, Miranda-Rios J, Zhang A, Soltanzad N, Storz G. Small stress response proteins in Escherichia coli: proteins missed by classical proteomic studies. J Bacteriol 2010; 192:46-58.
-
(2010)
J Bacteriol
, vol.192
, pp. 46-58
-
-
Hemm, M.R.1
Paul, B.J.2
Miranda-Rios, J.3
Zhang, A.4
Soltanzad, N.5
Storz, G.6
-
50
-
-
38049115217
-
A dual function for a bacterial small RNA: SgrS performs base pairing-dependent regulation and encodes a functional polypeptide
-
Wadler CS, Vanderpool CK. A dual function for a bacterial small RNA: SgrS performs base pairing-dependent regulation and encodes a functional polypeptide. Proc Natl Acad Sci USA 2007; 104:20454-9.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 20454-20459
-
-
Wadler, C.S.1
Vanderpool, C.K.2
-
51
-
-
77952157242
-
A dual-function sRNA from B. subtilis: SR1 acts as a peptide encoding mRNA on the gapA operon
-
Gimpel M, Heidrich N, Mader U, Krugel H, Brantl S. A dual-function sRNA from B. subtilis: SR1 acts as a peptide encoding mRNA on the gapA operon. Mol Microbiol 2010; 76:990-1009.
-
(2010)
Mol Microbiol
, vol.76
, pp. 990-1009
-
-
Gimpel, M.1
Heidrich, N.2
Mader, U.3
Krugel, H.4
Brantl, S.5
-
52
-
-
79953009230
-
RNAcode: Robust discrimination of coding and noncoding regions in comparative sequence data
-
DOI: 10.1261/rna.2536111
-
Washietl S, Findeiß S, Müller SA, Kalkhof S, von Bergen M, Hofacker IL, et al. RNAcode: Robust discrimination of coding and noncoding regions in comparative sequence data. RNA 2011; DOI: 10.1261/rna.2536111.
-
(2011)
RNA
-
-
Washietl, S.1
Findeiß, S.2
Müller, S.A.3
Kalkhof, S.4
Von Bergen, M.5
Hofacker, I.L.6
-
53
-
-
34447499141
-
Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake
-
Kingford C, Ayanbule K, Salzberg SL. Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake. Genome Biology 2007; 8:22.
-
(2007)
Genome Biology
, vol.8
, pp. 22
-
-
Kingford, C.1
Ayanbule, K.2
Salzberg, S.L.3
-
54
-
-
0003157183
-
Noncoding RNA gene detection using comparative sequence analysis
-
Rivas E, Eddy SR. Noncoding RNA gene detection using comparative sequence analysis. BMC Bioinformatics 2001; 2:8.
-
(2001)
BMC Bioinformatics
, vol.2
, pp. 8
-
-
Rivas, E.1
Eddy, S.R.2
-
55
-
-
0025674423
-
An expression vector for the archaebacterium Haloferax volcanii
-
Nieuwlandt, Daniels J. An expression vector for the archaebacterium Haloferax volcanii. Bacteriol 1990; 172:7104-10.
-
(1990)
Bacteriol
, vol.172
, pp. 7104-7110
-
-
Nieuwlandt, D.J.1
-
56
-
-
34447303049
-
Transcriptome changes and cAMP oscillations in an archaeal cell cycle
-
Baumann A, Lange C, Soppa J. Transcriptome changes and cAMP oscillations in an archaeal cell cycle. BMC Cell Biol 2007; 8:21.
-
(2007)
BMC Cell Biol
, vol.8
, pp. 21
-
-
Baumann, A.1
Lange, C.2
Soppa, J.3
-
57
-
-
0001882075
-
A rapid procedure for the isolation of RNA from Haloferax volcanii
-
Robb FT, Place AR, Sowers KR, Schreier HJ, DasSarma S, Fleischmann EM, Eds. New York: Cold Spring Harbour Press
-
Nieuwlandt DT, Palmer JR, Armbruster DT, Kuo YP, Oda W, Daniels CJ. A rapid procedure for the isolation of RNA from Haloferax volcanii. In: Robb FT, Place AR, Sowers KR, Schreier HJ, DasSarma S, Fleischmann EM, Eds. Archaea: A laboratory manual. New York: Cold Spring Harbour Press 1995; 161.
-
(1995)
Archaea: A Laboratory Manual
, pp. 161
-
-
Nieuwlandt, D.T.1
Palmer, J.R.2
Armbruster, D.T.3
Kuo, Y.P.4
Oda, W.5
Daniels, C.J.6
-
58
-
-
33644876685
-
The UCSC Archaeal Genome Browser
-
Schneider KL, Pollard KS, Baertsch R, Pohl A, Lowe TM. The UCSC Archaeal Genome Browser. Nucleic Acids Res 2006; 34:407-10.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 407-410
-
-
Schneider, K.L.1
Pollard, K.S.2
Baertsch, R.3
Pohl, A.4
Lowe, T.M.5
|