-
2
-
-
0037123632
-
An expanding universe of noncoding RNAs
-
Storz G. An expanding universe of noncoding RNAs. Science 2002; 296:1260-1263
-
(2002)
Science
, vol.296
, pp. 1260-1263
-
-
Storz, G.1
-
3
-
-
0037112006
-
Stealth regulation: Biological circuits with small RNA switches
-
DOI 10.1101/gad.1030302
-
Gottesman S. Stealth regulation: biological circuits with small RNA switches. Genes Dev 2002; 16:2829-2842 (Pubitemid 35334733)
-
(2002)
Genes and Development
, vol.16
, Issue.22
, pp. 2829-2842
-
-
Gottesman, S.1
-
4
-
-
29044439528
-
MicroRNA-guided posttranscriptional gene regulation
-
DOI 10.1515/BC.2005.139
-
Chen PY, Meister G. microRNA-guided posttranscriptional gene regulation. Biol Chem 2005; 386:1205-1218 (Pubitemid 41790805)
-
(2005)
Biological Chemistry
, vol.386
, Issue.12
, pp. 1205-1218
-
-
Po, Y.C.1
Meister, G.2
-
5
-
-
4344682527
-
The small RNA regulators of Escherichia coli: Roles and mechanisms*
-
Gottesman S. The small RNA regulators of Escherichia coli: roles and mechanisms*. Annu Rev Microbiol 2004; 58:303-328
-
(2004)
Annu Rev Microbiol
, vol.58
, pp. 303-328
-
-
Gottesman, S.1
-
7
-
-
1842453716
-
Controlling mRNA stability and translation with small, noncoding RNAs
-
DOI 10.1016/j.mib.2004.02.015, PII S1369527404000281
-
Storz G, Opdyke JA, Zhang A. Controlling mRNA stability and translation with small, noncoding RNAs. Curr Opin Microbiol 2004; 7:140-144 (Pubitemid 38447046)
-
(2004)
Current Opinion in Microbiology
, vol.7
, Issue.2
, pp. 140-144
-
-
Storz, G.1
Opdyke, J.A.2
Zhang, A.3
-
8
-
-
34247567492
-
An Antisense RNA Inhibits Translation by Competing with Standby Ribosomes
-
DOI 10.1016/j.molcel.2007.04.003, PII S1097276507002195
-
Darfeuille F, Unoson C, Vogel J, Wagner EG. An antisense RNA inhibits translation by competing with standby ribosomes. Mol Cell 2007; 26:381-392 (Pubitemid 46687099)
-
(2007)
Molecular Cell
, vol.26
, Issue.3
, pp. 381-392
-
-
Darfeuille, F.1
Unoson, C.2
Vogel, J.3
Wagner, E.G.H.4
-
9
-
-
1842612028
-
Conservation analysis of small RNA genes in Escherichia coli
-
Epub 2004
-
Zhang Y, Zhang Z, Ling L, Shi B, Chen R. Conservation analysis of small RNA genes in Escherichia coli. Bioinformatics 2004; 20:599-603. Epub 2004.
-
(2004)
Bioinformatics
, vol.20
, pp. 599-603
-
-
Zhang, Y.1
Zhang, Z.2
Ling, L.3
Shi, B.4
Chen, R.5
-
11
-
-
0034615782
-
Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: Lessons from the Pyrococcus genomes
-
DOI 10.1006/jmbi.2000.3593
-
Gaspin C, Cavaille J, Erauso G, Bachellerie JP. Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: lessons from the Pyrococcus genomes. J Mol Biol 2000; 297:895-906. (Pubitemid 30692553)
-
(2000)
Journal of Molecular Biology
, vol.297
, Issue.4
, pp. 895-906
-
-
Gaspin, C.1
Cavaille, J.2
Erauso, G.3
Bachellerie, J.-P.4
-
13
-
-
43349108346
-
Combined in silico and experimental identification of the Pyrococcus abyssi H/ACA sRNAs and their target sites in ribosomal RNAs
-
Epub 08
-
Muller S, Leclerc F, Behm-Ansmant I, Fourmann JB, Charpentier B, Branlant C. Combined in silico and experimental identification of the Pyrococcus abyssi H/ACA sRNAs and their target sites in ribosomal RNAs. Nucleic Acids Res 2008; 36:2459-2475 Epub 08.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 2459-2475
-
-
Muller, S.1
Leclerc, F.2
Behm-Ansmant, I.3
Fourmann, J.B.4
Charpentier, B.5
Branlant, C.6
-
14
-
-
0034697257
-
Homologs of small nucleolar RNAs in Archaea
-
DOI 10.1126/science.288.5465.517
-
Omer AD, Lowe TM, Russell AG, Ebhardt H, Eddy SR, Dennis PP. Homologs of small nucleolar RNAs in Archaea. Science 2000; 288:517-522 (Pubitemid 30236034)
-
(2000)
Science
, vol.288
, Issue.5465
, pp. 517-522
-
-
Omer, A.D.1
Lowe, T.M.2
Russell, A.C.3
Ebhardt, H.4
Eddy, S.R.5
Dennis, P.P.6
-
15
-
-
0037188531
-
Identification of 86 candidates for small non-messenger RNAs from the archaeon Archaeoglobus fulgidus
-
Tang TH, Bachellerie JP, Rozhdestvensky T, Bortolin ML, Huber H, Drungowski M, et al. Identification of 86 candidates for small non-messenger RNAs from the archaeon Archaeoglobus fulgidus. Proc Natl Acad Sci USA 2002; 99:7536-7541
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 7536-7541
-
-
Tang, T.H.1
Bachellerie, J.P.2
Rozhdestvensky, T.3
Bortolin, M.L.4
Huber, H.5
Drungowski, M.6
-
16
-
-
13144269598
-
Identification of novel non-coding RNAs as potential antisense regulators in the archaeon Sulfolobus solfataricus
-
Tang TH, Polacek N, Zywicki M, Huber H, Brugger K, Garrett R, et al. Identification of novel non-coding RNAs as potential antisense regulators in the archaeon Sulfolobus solfataricus. Mol Microbiol 2005; 55:469-481
-
(2005)
Mol Microbiol
, vol.55
, pp. 469-481
-
-
Tang, T.H.1
Polacek, N.2
Zywicki, M.3
Huber, H.4
Brugger, K.5
Garrett, R.6
-
17
-
-
15944384666
-
The expanding world of small RNAs in the hyperthermophilic archaeon Sulfolobus solfataricus
-
Zago MA, Dennis PP, Omer AD. The expanding world of small RNAs in the hyperthermophilic archaeon Sulfolobus solfataricus. Mol Microbiol 2005; 55:1812-1828
-
(2005)
Mol Microbiol
, vol.55
, pp. 1812-1828
-
-
Zago, Ma.1
Dennis, P.P.2
Omer, A.D.3
-
18
-
-
33748672893
-
Searching RNA motifs and their intermolecular contacts with constraint networks
-
DOI 10.1093/bioinformatics/btl354
-
Thebault P, de Givry S, Schiex T, Gaspin C. Searching RNA motifs and their intermolecular contacts with constraint networks. Bioinformatics 2006; 22:2074-2080 Epub 06. (Pubitemid 44390896)
-
(2006)
Bioinformatics
, vol.22
, Issue.17
, pp. 2074-2080
-
-
Thebault, P.1
De Givry, S.2
Schiex, T.3
Gaspin, C.4
-
19
-
-
0036567632
-
Searching for RNA genes using base-composition statistics
-
Schattner P. Searching for RNA genes using base-composition statistics. Nucleic Acids Res 2002; 30:2076-2082 (Pubitemid 34537606)
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.9
, pp. 2076-2082
-
-
Schattner, P.1
-
20
-
-
3142770849
-
Experimental RNomics: A global approach to identifying small nuclear RNAs and their targets in different model organisms
-
Hüttenhofer A, Cavaille J, Bachellerie JP. Experimental RNomics: a global approach to identifying small nuclear RNAs and their targets in different model organisms. Methods Mol Biol 2004; 265:409-428
-
(2004)
Methods Mol Biol
, vol.265
, pp. 409-428
-
-
Hüttenhofer, A.1
Cavaille, J.2
Bachellerie, J.P.3
-
21
-
-
0034999985
-
A guided tour: Small RNA function in Aarchaea
-
DOI 10.1046/j.1365-2958.2001.02381.x
-
Dennis PP, Omer A, Lowe T. A guided tour: small RNA function in Archaea. Mol Microbiol 2001; 40:509-519 (Pubitemid 32453106)
-
(2001)
Molecular Microbiology
, vol.40
, Issue.3
, pp. 509-519
-
-
Dennis, P.P.1
Omer, A.2
Lowe, T.3
-
22
-
-
33645103946
-
From genomes to function: Haloarchaea as model organisms
-
Soppa J. From genomes to function: haloarchaea as model organisms. Microbiology 2006; 152:585-590
-
(2006)
Microbiology
, vol.152
, pp. 585-590
-
-
Soppa, J.1
-
23
-
-
37749051212
-
Experimental characterization of Cis-acting elements important for translation and transcription in halophilic archaea
-
Brenneis M, Hering O, Lange C, Soppa J. Experimental characterization of Cis-acting elements important for translation and transcription in halophilic archaea. PLoS Genet 2007; 3:229.
-
(2007)
PLoS Genet
, vol.3
, pp. 229
-
-
Brenneis, M.1
Hering, O.2
Lange, C.3
Soppa, J.4
-
24
-
-
0038341634
-
RNA-mediated control of virulence gene expression in bacterial pathogens
-
DOI 10.1016/S0966-842X(03)00118-5
-
Johansson J, Cossart P. RNA-mediated control of virulence gene expression in bacterial pathogens. Trends Microbiol 2003; 11:280-285 (Pubitemid 36725018)
-
(2003)
Trends in Microbiology
, vol.11
, Issue.6
, pp. 280-285
-
-
Johansson, J.1
Cossart, P.2
-
25
-
-
38049115217
-
A dual function for a bacterial small RNA: SgrS performs base pairing-dependent regulation and encodes a functional polypeptide
-
Epub 2007
-
Wadler CS, Vanderpool CK. A dual function for a bacterial small RNA: SgrS performs base pairing-dependent regulation and encodes a functional polypeptide. Proc Natl Acad Sci USA 2007; 104:20454-20459 Epub 2007.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 20454-20459
-
-
Wadler, C.S.1
Vanderpool, C.K.2
-
26
-
-
67650365675
-
Optimized generation of vectors for the construction of Haloferax volcanii deletion mutants
-
Hammelmann M, Soppa J. Optimized generation of vectors for the construction of Haloferax volcanii deletion mutants. J Microbiol Methods 2008; 8:8.
-
(2008)
J Microbiol Methods
, vol.8
, pp. 8
-
-
Hammelmann, M.1
Soppa, J.2
-
27
-
-
2342625231
-
Development of additional selectable markers for the halophilic archaeon Haloferax volcanii based on the leuB and trpA genes
-
Allers T, Ngo HP, Mevarech M, Lloyd RG. Development of additional selectable markers for the halophilic archaeon Haloferax volcanii based on the leuB and trpA genes. Appl Environ Microbiol 2004; 70:943-953
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 943-953
-
-
Allers, T.1
Ngo, H.P.2
Mevarech, M.3
Lloyd, R.G.4
-
28
-
-
34249714815
-
Genetic and physical mapping of DNA replication origins in Haloferax volcanii
-
Epub 2007
-
Norais C, Hawkins M, Hartman AL, Eisen JA, Myllykallio H, Allers T. Genetic and physical mapping of DNA replication origins in Haloferax volcanii. PLoS Genet 2007; 3:77. Epub 2007.
-
(2007)
PLoS Genet
, vol.3
, pp. 77
-
-
Norais, C.1
Hawkins, M.2
Hartman, A.L.3
Eisen, J.A.4
Myllykallio, H.5
Allers, T.6
-
29
-
-
33744800020
-
Target prediction for small, noncoding RNAs in bacteria
-
DOI 10.1093/nar/gkl356
-
Tjaden B, Goodwin SS, Opdyke JA, Guillier M, Fu DX, Gottesman S, et al. Target prediction for small, noncoding RNAs in bacteria. Nucleic Acids Res 2006; 34:2791-2802 (Pubitemid 43985640)
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.9
, pp. 2791-2802
-
-
Tjaden, B.1
Goodwin, S.S.2
Opdyke, J.A.3
Guillier, M.4
Fu, D.X.5
Gottesman, S.6
Storz, G.7
-
30
-
-
0037673518
-
RNA-modifying machines in archaea
-
Omer AD, Ziesche S, Decatur WA, Fournier MJ, Dennis PP. RNA-modifying machines in archaea. Mol Microbiol 2003; 48:617-29.
-
(2003)
Mol Microbiol
, vol.48
, pp. 617-629
-
-
Omer, A.D.1
Ziesche, S.2
Decatur, W.A.3
Fournier, M.J.4
Dennis, P.P.5
-
31
-
-
0141869105
-
Functional requirement for symmetric assembly of archaeal box C/D small ribonucleoprotein particles
-
DOI 10.1016/j.jmb.2003.08.012
-
Rashid R, Aittaleb M, Chen Q, Spiegel K, Demeler B, Li H. Functional requirement for symmetric assembly of archaeal box C/D small ribonucleoprotein particles. J Mol Biol 2003; 333:295-306. (Pubitemid 37188573)
-
(2003)
Journal of Molecular Biology
, vol.333
, Issue.2
, pp. 295-306
-
-
Rashid, R.1
Aittaleb, M.2
Chen, Q.3
Spiegel, K.4
Demeler, B.5
Li, H.6
-
32
-
-
0037324527
-
Binding of L7Ae protein to the K-turn of archaeal snoRNAs: A shared RNA binding motif for C/D and H/ACA box snoRNAs in Archaea
-
DOI 10.1093/nar/gkg175
-
Rozhdestvensky TS, Tang TH, Tchirkova IV, Brosius J, Bachellerie JP, Hüttenhofer A. Binding of L7Ae protein to the K-turn of archaeal snoRNAs: a shared RNA binding motif for C/D and H/ACA box snoRNAs in Archaea. Nucleic Acids Res 2003; 31:869-877 (Pubitemid 36240424)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.3
, pp. 869-877
-
-
Rozhdestvensky, T.S.1
Tang, T.H.2
Tchirkova, I.V.3
Brosius, J.4
Bachellerie, J.-P.5
Huttenhofer, A.6
-
33
-
-
0037082426
-
RNomics in Archaea reveals a further link between splicing of archaeal introns and rRNA processing
-
Tang TH, Rozhdestvensky TS, d'Orval BC, Bortolin ML, Huber H, Charpentier B, et al. RNomics in Archaea reveals a further link between splicing of archaeal introns and rRNA processing. Nucleic Acids Res 2002; 30:921-930
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 921-930
-
-
Tang, T.H.1
Rozhdestvensky, T.S.2
D'Orval, B.C.3
Bortolin, M.L.4
Huber, H.5
Charpentier, B.6
-
34
-
-
0043026864
-
Efficient RNA 2′-O-methylation requires juxtaposed and symmetrically assembled archaeal box C/D and C'/D' RNPs
-
DOI 10.1093/emboj/cdg368
-
Tran EJ, Zhang X, Maxwell ES. Efficient RNA 2′-O-methylation requires juxtaposed and symmetrically assembled archaeal box C/D and C'/D' RNPs. EMBO J 2003; 22:3930-3940 (Pubitemid 36975719)
-
(2003)
EMBO Journal
, vol.22
, Issue.15
, pp. 3930-3940
-
-
Tran, E.J.1
Zhang, X.2
Maxwell, E.S.3
-
35
-
-
8544236965
-
RNA-guided nucleotide modification of ribosomal and non-ribosomal RNAs in Archaea
-
Ziesche SM, Omer AD, Dennis PP. RNA-guided nucleotide modification of ribosomal and non-ribosomal RNAs in Archaea. Mol Microbiol 2004; 54:980-93.
-
(2004)
Mol Microbiol
, vol.54
, pp. 980-993
-
-
Ziesche, S.M.1
Omer, A.D.2
Dennis, P.P.3
-
36
-
-
0001882075
-
A rapid procedure for the isolation of RNA from Haloferax volcanii
-
Robb FT, Place AR, Sowers KR, Schreier HJ, DasSarma S, Fleischmann EM, eds New York: Cold Spring Harbour Press
-
Nieuwlandt DT, Palmer JR, Armbruster DT, Kuo Y-P, Oda W, Daniels CJ. A rapid procedure for the isolation of RNA from Haloferax volcanii. In: Robb FT, Place AR, Sowers KR, Schreier HJ, DasSarma S, Fleischmann EM, eds. Archaea: A laboratory manual. New York: Cold Spring Harbour Press 1995; 161.
-
(1995)
Archaea: A Laboratory Manual
, vol.161
-
-
Nieuwlandt, D.T.1
Palmer, J.R.2
Armbruster, D.T.3
Kuo, Y.-P.4
Oda, W.5
Daniels, C.J.6
-
37
-
-
0031473030
-
Displaying the information contents of structural RNA alignments: The structure logos
-
Gorodkin J, Heyer LJ, Brunak S, Stormo GD. Displaying the information contents of structural RNA alignments: the structure logos. Comput Appl Biosci 1997; 13:583-586 (Pubitemid 28039651)
-
(1997)
Computer Applications in the Biosciences
, vol.13
, Issue.6
, pp. 583-586
-
-
Gorodkin, J.1
Heyer, L.J.2
Brunak, S.3
Stormo, G.D.4
-
38
-
-
0028685490
-
Fitting a mixture model by expectation maximization to discover motifs in biopolymers
-
Bailey TL, Elkan C. Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc Int Conf Intell Syst Mol Biol 1994; 2:28-36.
-
(1994)
Proc Int Conf Intell Syst Mol Biol
, vol.2
, pp. 28-36
-
-
Bailey, T.L.1
Elkan, C.2
-
39
-
-
0036096734
-
Functional role for a 2-oxo acid dehydrogenase in the halophilic archaeon Haloferax volcanii
-
Wanner C, Soppa J. Functional role for a 2-oxo acid dehydrogenase in the halophilic archaeon Haloferax volcanii. J Bacteriol 2002; 184:3114-3121
-
(2002)
J Bacteriol
, vol.184
, pp. 3114-3121
-
-
Wanner, C.1
Soppa, J.2
-
40
-
-
35448983080
-
Three 2-oxoacid dehydrogenase operons in Haloferax volcanii: Expression, deletion mutants and evolution
-
van Ooyen J, Soppa J. Three 2-oxoacid dehydrogenase operons in Haloferax volcanii: expression, deletion mutants and evolution. Microbiology 2007; 153:3303-3313
-
(2007)
Microbiology
, vol.153
, pp. 3303-3313
-
-
Van Ooyen, J.1
Soppa, J.2
-
41
-
-
0029879480
-
Characterization of the distal promoter element of halobacteria in vivo using saturation mutagenesis and selection
-
DOI 10.1111/j.1365-2958.1996.tb02471.x
-
Danner S, Soppa J. Characterization of the distal promoter element of halobacteria in vivo using saturation mutagenesis and selection. Mol Microbiol 1996; 19:1265-1276 (Pubitemid 26111500)
-
(1996)
Molecular Microbiology
, vol.19
, Issue.6
, pp. 1265-1276
-
-
Danner, S.1
Soppa, J.2
-
42
-
-
0023472472
-
Tricine-sodium dodecyl sulfate-polyacrylamide gel electrophoresis for the separation of proteins in the range from 1 to 100 kDa
-
DOI 10.1016/0003-2697(87)90587-2
-
Schägger H, von Jagow G. Tricine-sodium dodecyl sulfate- polyacrylamide gel electrophoresis for the separation of proteins in the range from 1 to 100 kDa. Anal Biochem 1987; 166:368-379 (Pubitemid 18004907)
-
(1987)
Analytical Biochemistry
, vol.166
, Issue.2
, pp. 368-379
-
-
Schagger, H.1
Von Jagow, G.2
|