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Volumn 39, Issue 1, 2011, Pages 159-162

Regulatory RNAs in Haloferax volcanii

Author keywords

Archaeon; Haloferax volcanii; Lsm; Small RNA; tRNA derived fragment

Indexed keywords

BACTERIAL RNA; COMPLEMENTARY RNA;

EID: 79551502747     PISSN: 03005127     EISSN: 14708752     Source Type: Journal    
DOI: 10.1042/BST0390159     Document Type: Conference Paper
Times cited : (15)

References (47)
  • 1
    • 3142566642 scopus 로고    scopus 로고
    • Small RNAs shed some light
    • Gottesman, S. (2004) Small RNAs shed some light. Cell 118, 1-2
    • (2004) Cell , vol.118 , pp. 1-2
    • Gottesman, S.1
  • 3
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: Genomics, biogenesis, mechanism, and function
    • Bartel, D.P. (2004) MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116, 281-297
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 4
    • 29044439528 scopus 로고    scopus 로고
    • microRNA-guided posttranscriptional gene regulation
    • Chen, P.Y. and Meister, G. (2005) microRNA-guided posttranscriptional gene regulation. Biol. Chem. 386, 1205-1218
    • (2005) Biol. Chem. , vol.386 , pp. 1205-1218
    • Chen, P.Y.1    Meister, G.2
  • 5
    • 57149111586 scopus 로고    scopus 로고
    • Small RNA binding to 5′ mRNA coding region inhibits translational initiation
    • Bouvier, M., Sharma, C.M., Mika, F., Nierhaus, K.H. and Vogel, J. (2008) Small RNA binding to 5′ mRNA coding region inhibits translational initiation. Mol. Cell 32, 827-837
    • (2008) Mol. Cell , vol.32 , pp. 827-837
    • Bouvier, M.1    Sharma, C.M.2    Mika, F.3    Nierhaus, K.H.4    Vogel, J.5
  • 6
    • 35948970194 scopus 로고    scopus 로고
    • A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sites
    • Sharma, C.M., Darfeuille, F., Plantinga, T.H. and Vogel, J. (2007) A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sites. Genes Dev. 21, 2804-2817
    • (2007) Genes Dev. , vol.21 , pp. 2804-2817
    • Sharma, C.M.1    Darfeuille, F.2    Plantinga, T.H.3    Vogel, J.4
  • 7
    • 4344682527 scopus 로고    scopus 로고
    • The small RNA regulators of Escherichia coli: Roles and mechanisms
    • Gottesman, S. (2004) The small RNA regulators of Escherichia coli: roles and mechanisms. Annu. Rev. Microbiol. 58, 303-328
    • (2004) Annu. Rev. Microbiol. , vol.58 , pp. 303-328
    • Gottesman, S.1
  • 8
    • 60149089144 scopus 로고    scopus 로고
    • Regulatory RNAs in bacteria
    • Waters, L.S. and Storz, G. (2009) Regulatory RNAs in bacteria. Cell 136, 615-628
    • (2009) Cell , vol.136 , pp. 615-628
    • Waters, L.S.1    Storz, G.2
  • 9
    • 0034615782 scopus 로고    scopus 로고
    • Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: Lessons from the Pyrococcus genomes
    • Gaspin, C., Cavaille, J., Erauso, G. and Bachellerie, J.P. (2000) Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: lessons from the Pyrococcus genomes. J. Mol. Biol. 297, 895-906
    • (2000) J. Mol. Biol. , vol.297 , pp. 895-906
    • Gaspin, C.1    Cavaille, J.2    Erauso, G.3    Bachellerie, J.P.4
  • 13
    • 0037133945 scopus 로고    scopus 로고
    • Computational genomics of noncoding RNA genes
    • Eddy, S.R. (2002) Computational genomics of noncoding RNA genes. Cell 109, 137-140
    • (2002) Cell , vol.109 , pp. 137-140
    • Eddy, S.R.1
  • 14
    • 76049099044 scopus 로고    scopus 로고
    • Deep sequencing analysis of the Methanosarcina mazei Go1 transcriptome in response to nitrogen availability
    • Jäger, D., Sharma, C.M., Thomsen, J., Ehlers, C., Vogel, J. and Schmitz, R.A. (2009) Deep sequencing analysis of the Methanosarcina mazei Go1 transcriptome in response to nitrogen availability. Proc. Natl. Acad. Sci. U.S.A. 106, 21878-21882
    • (2009) Proc. Natl. Acad. Sci. U.S.A. , vol.106 , pp. 21878-21882
    • Jäger, D.1    Sharma, C.M.2    Thomsen, J.3    Ehlers, C.4    Vogel, J.5    Schmitz, R.A.6
  • 15
    • 0037188546 scopus 로고    scopus 로고
    • Noncoding RNA genes identified in AT-rich hyperthermophiles
    • Klein, R.J., Misulovin, Z. and Eddy, S.R. (2002) Noncoding RNA genes identified in AT-rich hyperthermophiles. Proc. Natl. Acad. Sci. U.S.A. 99, 7542-7547
    • (2002) Proc. Natl. Acad. Sci. U.S.A. , vol.99 , pp. 7542-7547
    • Klein, R.J.1    Misulovin, Z.2    Eddy, S.R.3
  • 16
    • 43349108346 scopus 로고    scopus 로고
    • Combined in silico and experimental identification of the Pyrococcus abyssi H/ACA sRNAs and their target sites in ribosomal RNAs
    • Muller, S., Leclerc, F., Behm-Ansmant, I., Fourmann, J.B., Charpentier, B. and Branlant, C. (2008) Combined in silico and experimental identification of the Pyrococcus abyssi H/ACA sRNAs and their target sites in ribosomal RNAs. Nucleic Acids Res. 36, 2459-2475
    • (2008) Nucleic Acids Res. , vol.36 , pp. 2459-2475
    • Muller, S.1    Leclerc, F.2    Behm-Ansmant, I.3    Fourmann, J.B.4    Charpentier, B.5    Branlant, C.6
  • 17
    • 0036567632 scopus 로고    scopus 로고
    • Searching for RNA genes using base-composition statistics
    • Schattner, P. (2002) Searching for RNA genes using base-composition statistics. Nucleic Acids Res. 30, 2076-2082
    • (2002) Nucleic Acids Res. , vol.30 , pp. 2076-2082
    • Schattner, P.1
  • 19
    • 67650489281 scopus 로고    scopus 로고
    • Small RNAs in haloarchaea: Identification, differential expression and biological function
    • Straub, J., Brenneis, M., Jellen-Ritter, A., Heyer, R., Soppa, J. and Marchfelder, A. (2009) Small RNAs in haloarchaea: identification, differential expression and biological function. RNA Biol. 6, 281-292
    • (2009) RNA Biol. , vol.6 , pp. 281-292
    • Straub, J.1    Brenneis, M.2    Jellen-Ritter, A.3    Heyer, R.4    Soppa, J.5    Marchfelder, A.6
  • 21
    • 15944384666 scopus 로고    scopus 로고
    • The expanding world of small RNAs in the hyperthermophilic archaeon Sulfolobus solfataricus
    • Zago, M.A., Dennis, P.P. and Omer, A.D. (2005) The expanding world of small RNAs in the hyperthermophilic archaeon Sulfolobus solfataricus. Mol. Microbiol. 55, 1812-1828
    • (2005) Mol. Microbiol. , vol.55 , pp. 1812-1828
    • Zago, M.A.1    Dennis, P.P.2    Omer, A.D.3
  • 24
    • 71549169628 scopus 로고    scopus 로고
    • Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs
    • Cole, C., Sobala, A., Lu, C., Thatcher, S.R., Bowman, A., Brown, J.W., Green, P.J., Barton, G.J. and Hutvagner, G. (2009) Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs. RNA 15, 2147-2160
    • (2009) RNA , vol.15 , pp. 2147-2160
    • Cole, C.1    Sobala, A.2    Lu, C.3    Thatcher, S.R.4    Bowman, A.5    Brown, J.W.6    Green, P.J.7    Barton, G.J.8    Hutvagner, G.9
  • 25
    • 72749089855 scopus 로고    scopus 로고
    • A novel class of small RNAs: TRNA-derived RNA fragments (tRFs)
    • Lee, Y.S., Shibata, Y., Malhotra, A. and Dutta, A. (2009) A novel class of small RNAs: tRNA-derived RNA fragments (tRFs). Genes Dev. 23, 2639-2649
    • (2009) Genes Dev. , vol.23 , pp. 2639-2649
    • Lee, Y.S.1    Shibata, Y.2    Malhotra, A.3    Dutta, A.4
  • 26
    • 58749113430 scopus 로고    scopus 로고
    • A three-dimensional view of the molecular machinery of RNA interference
    • Jinek, M. and Doudna, J.A. (2009) A three-dimensional view of the molecular machinery of RNA interference. Nature 457, 405-412
    • (2009) Nature , vol.457 , pp. 405-412
    • Jinek, M.1    Doudna, J.A.2
  • 29
    • 0037133946 scopus 로고    scopus 로고
    • Small RNAs in bacteria: Diverse regulators of gene expression in response to environmental changes
    • Wassarman, K.M. (2002) Small RNAs in bacteria: diverse regulators of gene expression in response to environmental changes. Cell 109, 141-144
    • (2002) Cell , vol.109 , pp. 141-144
    • Wassarman, K.M.1
  • 30
    • 0032531904 scopus 로고    scopus 로고
    • The OxyS regulatory RNA represses rpoS translation and binds the Hfq (HF-I) protein
    • Zhang, A., Altuvia, S., Tiwari, A., Argaman, L., Hengge-Aronis, R. and Storz, G. (1998) The OxyS regulatory RNA represses rpoS translation and binds the Hfq (HF-I) protein. EMBO J. 17, 6061-6068
    • (1998) EMBO J. , vol.17 , pp. 6061-6068
    • Zhang, A.1    Altuvia, S.2    Tiwari, A.3    Argaman, L.4    Hengge-Aronis, R.5    Storz, G.6
  • 31
    • 79551498341 scopus 로고    scopus 로고
    • Structure, function and RNA binding mechanisms of the prokaryotic Sm-like protein hfq
    • Hess, W.R. and Marchfelder, A., eds, Springer, Vienna, in the press
    • Valentin-Hansen, P. (2010) Structure, function and RNA binding mechanisms of the prokaryotic Sm-like protein hfq. In Regulatory RNAs in Prokaryotes (Hess, W.R. and Marchfelder, A., eds), Springer, Vienna, in the press
    • (2010) Regulatory RNAs in Prokaryotes
    • Valentin-Hansen, P.1
  • 32
    • 23944455046 scopus 로고    scopus 로고
    • LSm proteins form heptameric rings that bind to RNA via repeating motifs
    • Khusial, P., Plaag, R. and Zieve, G.W. (2005) LSm proteins form heptameric rings that bind to RNA via repeating motifs. Trends Biochem. Sci. 30, 522-528
    • (2005) Trends Biochem. Sci. , vol.30 , pp. 522-528
    • Khusial, P.1    Plaag, R.2    Zieve, G.W.3
  • 33
    • 0035826794 scopus 로고    scopus 로고
    • The crystal structure of a heptameric archaeal Sm protein: Implications for the eukaryotic snRNP core
    • Mura, C., Cascio, D., Sawaya, M.R. and Eisenberg, D.S. (2001) The crystal structure of a heptameric archaeal Sm protein: implications for the eukaryotic snRNP core. Proc. Natl. Acad. Sci. U.S.A. 98, 5532-5537
    • (2001) Proc. Natl. Acad. Sci. U.S.A. , vol.98 , pp. 5532-5537
    • Mura, C.1    Cascio, D.2    Sawaya, M.R.3    Eisenberg, D.S.4
  • 34
    • 0033564627 scopus 로고    scopus 로고
    • Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin
    • Salgado-Garrido, J., Bragado-Nilsson, E., Kandels-Lewis, S. and Seraphin, B. (1999) Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin. EMBO J. 18, 3451-3462
    • (1999) EMBO J. , vol.18 , pp. 3451-3462
    • Salgado-Garrido, J.1    Bragado-Nilsson, E.2    Kandels-Lewis, S.3    Seraphin, B.4
  • 35
    • 36248940726 scopus 로고    scopus 로고
    • An Hfq-like protein in archaea: Crystal structure and functional characterization of the Sm protein from Methanococcus jannaschii
    • Nielsen, J.S., Boggild, A., Andersen, C.B., Nielsen, G., Boysen, A., Brodersen, D.E. and Valentin-Hansen, P. (2007) An Hfq-like protein in archaea: crystal structure and functional characterization of the Sm protein from Methanococcus jannaschii. RNA 13, 2213-2223
    • (2007) RNA , vol.13 , pp. 2213-2223
    • Nielsen, J.S.1    Boggild, A.2    Andersen, C.B.3    Nielsen, G.4    Boysen, A.5    Brodersen, D.E.6    Valentin-Hansen, P.7
  • 36
    • 0242380623 scopus 로고    scopus 로고
    • Sm-like proteins in Eubacteria: The crystal structure of the Hfq protein from Escherichia coli
    • Sauter, C., Basquin, J. and Suck, D. (2003) Sm-like proteins in Eubacteria: the crystal structure of the Hfq protein from Escherichia coli. Nucleic Acids Res. 31, 4091-4098
    • (2003) Nucleic Acids Res. , vol.31 , pp. 4091-4098
    • Sauter, C.1    Basquin, J.2    Suck, D.3
  • 37
    • 0035957394 scopus 로고    scopus 로고
    • The Sm domain is an ancient RNA-binding motif with oligo(U) specificity
    • Achsel, T., Stark, H. and Lührmann, R. (2001) The Sm domain is an ancient RNA-binding motif with oligo(U) specificity. Proc. Natl. Acad. Sci. U.S.A. 98, 3685-3689
    • (2001) Proc. Natl. Acad. Sci. U.S.A. , vol.98 , pp. 3685-3689
    • Achsel, T.1    Stark, H.2    Lührmann, R.3
  • 38
    • 0035876146 scopus 로고    scopus 로고
    • Crystal structure of a heptameric Sm-like protein complex from archaea: Implications for the structure and evolution of snRNPs
    • Collins, B.M., Harrop, S.J., Kornfeld, G.D., Dawes, I.W., Curmi, P.M. and Mabbutt, B.C. (2001) Crystal structure of a heptameric Sm-like protein complex from archaea: implications for the structure and evolution of snRNPs. J. Mol. Biol. 309, 915-923
    • (2001) J. Mol. Biol. , vol.309 , pp. 915-923
    • Collins, B.M.1    Harrop, S.J.2    Kornfeld, G.D.3    Dawes, I.W.4    Curmi, P.M.5    Mabbutt, B.C.6
  • 39
    • 0037428440 scopus 로고    scopus 로고
    • Crystal structures of the Pyrococcus abyssi Sm core and its complex with RNA: Common features of RNA binding in archaea and eukarya
    • Thore, S., Mayer, C., Sauter, C., Weeks, S. and Suck, D. (2003) Crystal structures of the Pyrococcus abyssi Sm core and its complex with RNA: common features of RNA binding in archaea and eukarya. J. Biol. Chem. 278, 1239-1247
    • (2003) J. Biol. Chem. , vol.278 , pp. 1239-1247
    • Thore, S.1    Mayer, C.2    Sauter, C.3    Weeks, S.4    Suck, D.5
  • 40
    • 0036290884 scopus 로고    scopus 로고
    • Archaeal Sm proteins form heptameric and hexameric complexes: Crystal structures of the Sm1 and Sm2 proteins from the hyperthermophile Archaeoglobus fulgidus
    • Törö, I., Basquin, J., Teo-Dreher, H. and Suck, D. (2002) Archaeal Sm proteins form heptameric and hexameric complexes: crystal structures of the Sm1 and Sm2 proteins from the hyperthermophile Archaeoglobus fulgidus. J. Mol. Biol. 320, 129-142
    • (2002) J. Mol. Biol. , vol.320 , pp. 129-142
    • Törö, I.1    Basquin, J.2    Teo-Dreher, H.3    Suck, D.4
  • 41
    • 0035341325 scopus 로고    scopus 로고
    • RNA binding in an Sm core domain: X-ray structure and functional analysis of an archaeal Sm protein complex
    • Törö, I., Thore, S., Mayer, C., Basquin, J., Séraphin, B. and Suck, D. (2001) RNA binding in an Sm core domain: X-ray structure and functional analysis of an archaeal Sm protein complex. EMBO J. 20, 2293-2303
    • (2001) EMBO J. , vol.20 , pp. 2293-2303
    • Törö, I.1    Thore, S.2    Mayer, C.3    Basquin, J.4    Séraphin, B.5    Suck, D.6
  • 42
    • 0036645689 scopus 로고    scopus 로고
    • Structures of the pleiotropic translational regulator Hfq and an Hfq-RNA complex: A bacterial Sm-like protein
    • Schumacher, M.A., Pearson, R.F., Møller, T., Valentin-Hansen, P. and Brennan, R.G. (2002) Structures of the pleiotropic translational regulator Hfq and an Hfq-RNA complex: a bacterial Sm-like protein. EMBO J. 21, 3546-3556
    • (2002) EMBO J. , vol.21 , pp. 3546-3556
    • Schumacher, M.A.1    Pearson, R.F.2    Møller, T.3    Valentin-Hansen, P.4    Brennan, R.G.5
  • 43
    • 0019256070 scopus 로고
    • Interaction of Escherichia coli host factor protein with Qβ ribonucleic acid
    • de Haseth, P.L. and Uhlenbeck, O.C. (1980) Interaction of Escherichia coli host factor protein with Qβ ribonucleic acid. Biochemistry 19, 6146-6151
    • (1980) Biochemistry , vol.19 , pp. 6146-6151
    • De Haseth, P.L.1    Uhlenbeck, O.C.2
  • 44
    • 0017227834 scopus 로고
    • Site-specific interaction of Qβ host factor and ribosomal protein S1 with Qβ and R17 bacteriophage RNAs
    • Senear, A.W. and Steitz, J.A. (1976) Site-specific interaction of Qβ host factor and ribosomal protein S1 with Qβ and R17 bacteriophage RNAs. J. Biol. Chem. 251, 1902-1912
    • (1976) J. Biol. Chem. , vol.251 , pp. 1902-1912
    • Senear, A.W.1    Steitz, J.A.2
  • 45
    • 1642565815 scopus 로고    scopus 로고
    • The bacterial Sm-like protein Hfq: A key player in RNA transactions
    • Valentin-Hansen, P., Eriksen, M. and Udesen, C. (2004) The bacterial Sm-like protein Hfq: a key player in RNA transactions. Mol. Microbiol. 51, 1525-1533
    • (2004) Mol. Microbiol. , vol.51 , pp. 1525-1533
    • Valentin-Hansen, P.1    Eriksen, M.2    Udesen, C.3
  • 47
    • 28544442127 scopus 로고    scopus 로고
    • Eukaryotic Lsm proteins: Lessons from bacteria
    • Wilusz, C.J. and Wilusz, J. (2005) Eukaryotic Lsm proteins: lessons from bacteria. Nat. Struct. Mol. Biol. 12, 1031-1036
    • (2005) Nat. Struct. Mol. Biol. , vol.12 , pp. 1031-1036
    • Wilusz, C.J.1    Wilusz, J.2


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