-
1
-
-
1942453088
-
The impact of species concept on biodiversity studies
-
Agapow P.-M., Bininda-Edmonds O.R., Crandall K.A., Gittleman J.L., Mace G.M., Marshall J.C., Purvis A. 2004. The impact of species concept on biodiversity studies. Q. Rev. Biol. 79:161-179.
-
(2004)
Q. Rev. Biol
, vol.79
, pp. 161-179
-
-
Agapow, P.-M.1
Bininda-Edmonds, O.R.2
Crandall, K.A.3
Gittleman, J.L.4
MacE, G.M.5
Marshall, J.C.6
Purvis, A.7
-
2
-
-
31944437577
-
A critical branching process model for biodiversity
-
Aldous D., Popovic L. 2005. A critical branching process model for biodiversity. Adv. Appl. Probab. 37:1094-1115.
-
(2005)
Adv. Appl. Probab
, vol.37
, pp. 1094-1115
-
-
Aldous, D.1
Popovic, L.2
-
3
-
-
0030595819
-
Constant extinction, constrained diversifcation, and uncoordinated stasis in North American mammals
-
Alroy J. 1996. Constant extinction, constrained diversifcation, and uncoordinated stasis in North American mammals. Palaeogeogr. Palaeoclimatol. Palaeoecol. 127:285-311.
-
(1996)
Palaeogeogr. Palaeoclimatol. Palaeoecol
, vol.127
, pp. 285-311
-
-
Alroy, J.1
-
4
-
-
50049122138
-
Dynamics of origination and extinction in the marine fossil record
-
Alroy J. 2008. Dynamics of origination and extinction in the marine fossil record. Proc. Natl. Acad. Sci. USA. 105:11536.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 11536
-
-
Alroy, J.1
-
5
-
-
34047108602
-
The delayed rise of present-day mammals
-
Bininda-Edmonds O.R.P., Cardillo M., Jones K.E., MacPhee R.D.E., Beck R.M.D., Grenyer R., Price S.A., Vos R.A., Gittleman J.L., Purvis A. 2007. The delayed rise of present-day mammals. Nature. 446:507-512.
-
(2007)
Nature
, vol.446
, pp. 507-512
-
-
Bininda-Edmonds, O.R.P.1
Cardillo, M.2
Jones, K.E.3
MacPhee, R.D.E.4
Beck, R.M.D.5
Grenyer, R.6
Price, S.A.7
Vos, R.A.8
Gittleman, J.L.9
Purvis, A.10
-
6
-
-
33750245951
-
Which random processes describe the tree of life? A large-scale study of phylogenetic tree imbalance
-
Blum M., Francois O. 2006. Which random processes describe the tree of life? A large-scale study of phylogenetic tree imbalance. Syst. Biol. 55:685.
-
(2006)
Syst. Biol
, vol.55
, pp. 685
-
-
Blum, M.1
Francois, O.2
-
7
-
-
0032950511
-
Accounting for mode of speciation increases power and realism of tests of phylogenetic asymmetry
-
Chan K.M.A., Moore B.R. 1999. Accounting for mode of speciation increases power and realism of tests of phylogenetic asymmetry. Am. Nat. 153:332-346.
-
(1999)
Am. Nat
, vol.153
, pp. 332-346
-
-
Chan, K.M.A.1
Moore, B.R.2
-
8
-
-
0036959868
-
Whole-tree methods for detecting differential diversifcation rates
-
Chan K.M.A., Moore B.R. 2002. Whole-tree methods for detecting differential diversifcation rates. Syst. Biol. 51:855-865.
-
(2002)
Syst. Biol
, vol.51
, pp. 855-865
-
-
Chan, K.M.A.1
Moore, B.R.2
-
9
-
-
48049107322
-
The conditioned reconstructed process
-
Gernhard T. 2008. The conditioned reconstructed process. J. Theor. Biol. 253:769-778.
-
(2008)
J. Theor. Biol
, vol.253
, pp. 769-778
-
-
Gernhard, T.1
-
10
-
-
23744452485
-
Estimating the tempo and modeof gene family evolution from comparative genomic data
-
Hahn M., De Bie T., Stajich J., Nguyen C., Cristianini N. 2005. Estimating the tempo and modeof gene family evolution from comparative genomic data. Genome Res. 15:1153.
-
(2005)
Genome Res
, vol.15
, pp. 1153
-
-
Hahn, M.1
De Bie, T.2
Stajich, J.3
Nguyen, C.4
Cristianini, N.5
-
11
-
-
0001996348
-
The probabilities of rooted tree-shapes generated by random bifurcation
-
Harding E.F. 1971. The probabilities of rooted tree-shapes generated by random bifurcation. Adv. Appl. Probab. 3:44-77.
-
(1971)
Adv. Appl. Probab
, vol.3
, pp. 44-77
-
-
Harding, E.F.1
-
12
-
-
77953794183
-
-
Hobart, Australia: Tasmanian Aqua-culture and Fisheries Institute, University of Tasmania
-
Hartmann K. 2010. Tree sample. Hobart, Australia: Tasmanian Aqua-culture and Fisheries Institute, University of Tasmania. Available from: http://treesample.googlecode.com.
-
(2010)
Tree Sample
-
-
Hartmann, K.1
-
13
-
-
0028561478
-
Phylogenies without fossils
-
Harvey P.H., May R.M., Nee S. 1994. Phylogenies without fossils. Evolution. 48:523-529.
-
(1994)
Evolution
, vol.48
, pp. 523-529
-
-
Harvey, P.H.1
May, R.M.2
Nee, S.3
-
14
-
-
0030484686
-
Patterns in phylogenetic tree balance with variable and evolving speciation rates
-
Heard S.B. 1996. Patterns in phylogenetic tree balance with variable and evolving speciation rates. Evolution. 50:2141-2148.
-
(1996)
Evolution
, vol.50
, pp. 2141-2148
-
-
Heard, S.B.1
-
15
-
-
0026540732
-
Using phylogenetic trees to study speciation and extinction
-
Hey J. 1992. Using phylogenetic trees to study speciation and extinction. Evolution. 46:627-640.
-
(1992)
Evolution
, vol.46
, pp. 627-640
-
-
Hey, J.1
-
16
-
-
34447260522
-
Is multiple-sequence alignment required for accurate inference of phylogeny?
-
Hohl M., Ragan M.A. 2007. Is multiple-sequence alignment required for accurate inference of phylogeny? Syst. Biol. 56:206-221.
-
(2007)
Syst. Biol
, vol.56
, pp. 206-221
-
-
Hohl, M.1
Ragan, M.A.2
-
17
-
-
0142148213
-
Simple stochastic birth and death models of genome evolution: Was there enough time for us to evolve?
-
Karev G.P., Wolf Y.I., Koonin E.V. 2003. Simple stochastic birth and death models of genome evolution: was there enough time for us to evolve? Bioinformatics. 19:1889-1900.
-
(2003)
Bioinformatics
, vol.19
, pp. 1889-1900
-
-
Karev, G.P.1
Wolf, Y.I.2
Koonin, E.V.3
-
18
-
-
0002743467
-
Exchangeability and the evolution of large populations
-
Koch G., Spizzichino F., editors Amsterdam-New York: North-Holland
-
Kingman J.F.C. 1982a. Exchangeability and the evolution of large populations. In: Koch G., Spizzichino F., editors. Exchangeability in probability and statistics. Amsterdam-New York: North-Holland. p. 97-112.
-
(1982)
Exchangeability in Probability and Statistics
, pp. 97-112
-
-
Kingman, J.F.C.1
-
19
-
-
0002556819
-
On the genealogy of large populations
-
Kingman J.F.C. 1982b. On the genealogy of large populations. J. Appl. Probab. 19A:27-43.
-
(1982)
J. Appl. Probab.
, vol.19 A
, pp. 27-43
-
-
Kingman, J.F.C.1
-
21
-
-
0034765180
-
Absolute diversifcation rates in an-giosperm clades
-
Magallón S., Sanderson M. 2001. Absolute diversifcation rates in an-giosperm clades. Evolution. 55:1762-1780
-
(2001)
Evolution
, vol.55
, pp. 1762-1780
-
-
Magallón, S.1
Sanderson, M.2
-
22
-
-
48049101266
-
Some models of phylogenetic tree shape
-
Gascuel O., Steel M., editors Oxford, UK: Oxford University Press
-
Mooers A.Ø., Harmon L., Blum M., Wong D., Heard S. 2007. Some models of phylogenetic tree shape. In: Gascuel O., Steel M., editors. Reconstructing evolution\new mathematical and computational advances. Oxford, UK: Oxford University Press
-
(2007)
Reconstructing Evolution\new Mathematical and Computational Advances
-
-
Mooers A.Ø1
Harmon, L.2
Blum, M.3
Wong, D.4
Heard, S.5
-
23
-
-
0002638760
-
Inferring evolutionary process from phylogenetic tree shape
-
Mooers A.Ø., Heard S.B. 1997. Inferring evolutionary process from phylogenetic tree shape. Q. Rev. Biol. 72:31-54.
-
(1997)
Q. Rev. Biol
, vol.72
, pp. 31-54
-
-
Mooers A.Ø1
Heard, S.B.2
-
24
-
-
0001733997
-
A general theory of the distribution of gene frequencies. I. Overlapping generations
-
Moran P. 1958. A general theory of the distribution of gene frequencies. I. Overlapping generations. Proc. R. Soc. Lond. B. 149:102-112.
-
(1958)
Proc. R. Soc. Lond. B.
, vol.149
, pp. 102-112
-
-
Moran, P.1
-
26
-
-
33746878289
-
Repression and loss of gene expression outpaces activation and gain in recently duplicated fy genes
-
Oakley T., Ostman B., Wilson A. 2006. Repression and loss of gene expression outpaces activation and gain in recently duplicated fy genes. Proc. Natl. Acad. Sci. USA. 103:11637.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 11637
-
-
Oakley, T.1
Ostman, B.2
Wilson, A.3
-
27
-
-
0028994998
-
A hierarchical branching model of evolutionary radiations
-
Patzkowsky M. 1995. A hierarchical branching model of evolutionary radiations. Paleobiology. 21:440-460. (Pubitemid 3025383)
-
(1995)
Paleobiology
, vol.21
, Issue.4
, pp. 440-460
-
-
Patzkowsky, M.E.1
-
28
-
-
26844542229
-
Asymptotic genealogy of a critical branching process
-
Popovic L. 2004. Asymptotic genealogy of a critical branching process. Ann. Appl. Probab. 14:2120-2148.
-
(2004)
Ann. Appl. Probab
, vol.14
, pp. 2120-2148
-
-
Popovic, L.1
-
29
-
-
0032434606
-
An evaluation of a hierarchical branching process as a model for species diversifcation
-
Przeworski M., Wall J. 1998. An evaluation of a hierarchical branching process as a model for species diversifcation. Paleobiology. 24: 498-511.
-
(1998)
Paleobiology
, vol.24
, pp. 498-511
-
-
Przeworski, M.1
Wall, J.2
-
30
-
-
16544372620
-
Evolution: How do characters evolve?
-
Purvis A. 2004. Evolution: how do characters evolve? Nature. 432:7014.
-
(2004)
Nature
, vol.432
, pp. 7014
-
-
Purvis, A.1
-
31
-
-
0034703844
-
Testing macro-evolutionary models using incomplete molecular phylogenies
-
Pybus O., Harvey P. 2000. Testing macro-evolutionary models using incomplete molecular phylogenies. Proc. R. Soc. Lond. B. 267: 2267-2272.
-
(2000)
Proc. R. Soc. Lond. B
, vol.267
, pp. 2267-2272
-
-
Pybus, O.1
Harvey, P.2
-
32
-
-
0242488262
-
-
Department of Zoology, University of Oxford, Oxford, UK
-
Rambaut A. 2002. PhyloGen: phylogenetic tree simulator package. Department of Zoology, University of Oxford, Oxford, UK. Available from: http://tree.bio.ed.ac.uk/software/phylogen/.
-
(2002)
PhyloGen: Phylogenetic Tree Simulator Package
-
-
Rambaut, A.1
-
33
-
-
0026358333
-
A kill curve for phanerozoic marine species
-
Raup D. 1991. A kill curve for phanerozoic marine species. Paleobiol-ogy. 17:37-48.
-
(1991)
Paleobiol-ogy
, vol.17
, pp. 37-48
-
-
Raup, D.1
-
34
-
-
0242552327
-
Global diversifcation rates of passerine birds
-
Ricklefs R. 2003. Global diversifcation rates of passerine birds. Proc. R. Soc. Lond. B. 270:2285-2291.
-
(2003)
Proc. R. Soc. Lond. B
, vol.270
, pp. 2285-2291
-
-
Ricklefs, R.1
-
35
-
-
3142696271
-
Cladogenesis and morphological diversifcation in passerine birds
-
Ricklefs R. 2004. Cladogenesis and morphological diversifcation in passerine birds. Nature. 430:338-341.
-
(2004)
Nature
, vol.430
, pp. 338-341
-
-
Ricklefs, R.1
-
36
-
-
0020343631
-
Mass extinctions in the Phanerozoic oceans: A review
-
Sepkoski J.J. 1982. Mass extinctions in the Phanerozoic oceans: a review. Geol. Soc. Am. Spec. Pap. 190:281-289.
-
(1982)
Geol. Soc. Am. Spec. Pap
, vol.190
, pp. 281-289
-
-
Sepkoski, J.J.1
-
37
-
-
0242487487
-
Phylogenetic evidence of a rapid radiation of pleurocarpous mosses (bryophyta)
-
Shaw A., Cox C., Goffnet B., Buck W., Boles S. 2003. Phylogenetic evidence of a rapid radiation of pleurocarpous mosses (bryophyta). Evolution. 57:2226-2241.
-
(2003)
Evolution
, vol.57
, pp. 2226-2241
-
-
Shaw, A.1
Cox, C.2
Goffnet, B.3
Buck, W.4
Boles, S.5
-
38
-
-
56049085351
-
Lineages-through-time plots of neutral models for spe-ciation
-
Stadler T. 2008. Lineages-through-time plots of neutral models for spe-ciation. Math. Biosci. 216:163-171.
-
(2008)
Math. Biosci
, vol.216
, pp. 163-171
-
-
Stadler, T.1
-
39
-
-
77953760263
-
-
Institute of Integrative Biology, Eid-genössische Technische Hochschule Zürich, Zürich, Switzerland. Available from:
-
Stadler T. 2010. Treesim. Institute of Integrative Biology, Eid-genössische Technische Hochschule Zürich, Zürich, Switzerland. Available from: http://www.tb.ethz.ch/people/tstadler.
-
(2010)
Treesim
-
-
Stadler, T.1
-
40
-
-
0000669426
-
Natural clades differ from "random" clades: Simulations and analyses
-
Stanley S.M., Signor P.W. III, Lidgard S., Karr A. F. 1981. Natural clades differ from "random" clades: simulations and analyses. Paleobiol-ogy. 7:115-127.
-
(1981)
Paleobiology
, vol.7
, pp. 115-127
-
-
Stanley, S.M.1
Signor III, P.W.2
Lidgard, S.3
Karr, A.F.4
-
41
-
-
33746419713
-
Using approximate Bayesian computation to estimate tuberculosis transmission parameters from genotype data
-
Tanaka M., Francis A., Luciani F., Sisson S. 2006. Using approximate Bayesian computation to estimate tuberculosis transmission parameters from genotype data. Genetics. 173:1511.
-
(2006)
Genetics
, vol.173
, pp. 1511
-
-
Tanaka, M.1
Francis, A.2
Luciani, F.3
Sisson, S.4
-
42
-
-
33749602096
-
Detecting the node-density artifact in phylogeny reconstruction
-
Venditti C., Meade A., Pagel M. 2006. Detecting the node-density artifact in phylogeny reconstruction. Syst. Biol. 55:637-643.
-
(2006)
Syst. Biol
, vol.55
, pp. 637-643
-
-
Venditti, C.1
Meade, A.2
Pagel, M.3
-
43
-
-
33745230793
-
Divergent timing and patterns of species accumulation in lowland and highland neotropical birds
-
Weir J.T. 2006. Divergent timing and patterns of species accumulation in lowland and highland neotropical birds. Evolution. 60:842-855.
-
(2006)
Evolution
, vol.60
, pp. 842-855
-
-
Weir, J.T.1
-
44
-
-
0030749810
-
Bayesian phylogenetic inference using DNA sequences: A Markov chain Monte Carlo method
-
Yang Z., Rannala B. 1997. Bayesian phylogenetic inference using DNA sequences: a Markov chain Monte Carlo method. Mol. Biol. Evol. 17:717-724.
-
(1997)
Mol. Biol. Evol
, vol.17
, pp. 717-724
-
-
Yang, Z.1
Rannala, B.2
-
45
-
-
0001778604
-
A mathematical theory of evolution, based on the conclusions of Dr. J. C. Willis, F.R.S. Philos
-
Yule G.U. 1924. A mathematical theory of evolution, based on the conclusions of Dr. J. C. Willis, F.R.S. Philos. Trans. R. Soc. Lond. B. 213:21-87.
-
(1924)
Trans. R. Soc. Lond. B.
, Issue.213
, pp. 21-87
-
-
Yule, G.U.1
-
46
-
-
0036699481
-
Increased taxon sampling greatly reduces phylogenetic error
-
Zwickl D.J., Hillis D.M. 2002. Increased taxon sampling greatly reduces phylogenetic error. Syst. Biol. 51:588-598.
-
(2002)
Syst. Biol
, vol.51
, pp. 588-598
-
-
Zwickl, D.J.1
Hillis, D.M.2
|