Connectivity-based structural and functional parcellation of the human cortex using diffusion imaging and tractography

Frontiers in Neuroanatomy

Volumn , Issue JULY 2012, 2012, Pages

  Cloutman, Lauren L ^a   Lambon Ralph, Matthew A ^a  

^a UNIVERSITY OF MANCHESTER   (United Kingdom)

Author keywords

Connectivity; Cytoarchitecture; Diffusion; Functional specialization; Tractography

Indexed keywords

ACCURACY; BRAIN CORTEX; BRAIN RADIOGRAPHY; BRAIN REGION; CORRELATION ANALYSIS; DIFFUSION TENSOR IMAGING; FUNCTIONAL ANATOMY; FUNCTIONAL MAGNETIC RESONANCE IMAGING; HUMAN; IN VIVO STUDY; INTERMETHOD COMPARISON; META ANALYSIS (TOPIC); METHODOLOGY; NERVE CELL NETWORK; NEUROANATOMY; NEUROIMAGING; NON INVASIVE PROCEDURE; REVIEW; WHITE MATTER;

EID: 84865083582     PISSN: 16625129     EISSN: None     Source Type: Journal    
DOI: 10.3389/fnana.2012.00034     Document Type: Review

References (242)

1. Amunts, K., Malikovic, A., Mohlberg, H., Schormann, T., and Zilles, K. (2000). Brodmann's areas 17 and 18 brought into stereotaxic space - Where and how variable? Neuroimage 11, 66-84.
2. Amunts, K., Schleicher, A., and Zilles, K. (2007). Cytoarchitecture of the cerebral cortex More than localization. Neuroimage 37, 1061-1065.
3. Amunts, K., Schleicher, A., Burgel, U., Mohlberg, H., Uylings, H. B. M., and Zilles, K. (1999). Broca's region revisited: Cytoarchitecture and intersubject variability. JComp Neurol 412, 319-341.
4. Angelucci, A., Clasca, F., Bricolo, E., Cramer, K. S., and Sur, M. (1997). Experimentally induced retinal projections to the ferret auditory thalamus: Development of clustered eye-specific patterns in a novel target. JNeurosci 17, 2040-2055.
5. Annese, J., Pitiot, A., Dinov, I. D., and Toga, A. W. (2004). A myelo-architectonic method for the structural classification of cortical areas. Neuroimage 21, 15-26.
6. Anwander, A., Tittgemeyer, M., von Cramon, D. Y., Friederici, A. D., and Knosche, T. R. (2007). Connectivity-based parcellation of Broca's area. Cereb Cortex 17, 816-825.
7. Arthurs, O. J., Johansen-Berg, H., Matthews, P. M., and Boniface, S. J. (2004). Attention differentially modulates the coupling of fMRI BOLD and evoked potential signal amplitudes in the human somatosensory cortex. Exp Brain Res 157, 269-274.
8. Assaf, Y., and Basser, P. J. (2005). Composite hindered and restricted model of diffusion (CHARMED) MR imaging of the human brain. Neuroimage 27, 48-58.
9. Bach, D. R., Behrens, T. E., Garrido, L., Weiskopf, N., and Dolan, R. J. (2011). Deep and superficial amygdala nuclei projections revealed in vivo by probabilistic tractography. JNeurosci 31, 618-623.
10. Barbas, H. (1996). Pattern in the laminar origin of corticocortical connections. JComp Neurol 252, 415-422.
11. Barbas, H., and Rempel-Clower, N. (1997). Cortical structure predicts the pattern of corticocortical connections. Cereb Cortex 7, 635-616.
12. Barnard, S. T., Pothen, A., and Simon, H. (1995). A spectral algorithm for envelope reduction of sparse matrices. Numer Linear Algebra Appl 2, 317-334.
13. Barnes, K. A., Nelson, S. M., Cohen, A. L., Power, J. D., Coalson, R. S., Miezin, F. M., Vogel, A. C, Dubis, J. W., Church, J. A., Petersen, S. E., and Schlaggar, B. L. (2011). Parcellation in left lateral parietal cortex is similar in adults and children. Cereb Cortex 22, 1148-1158.
14. Barrick, T. R., Lawes, I. N., Mackay, C. E., and Clark, C. A. (2007). White matter pathway asymmetry underlies functional lateralization. Cereb Cortex 17, 591-598.
15. Basser, P. J., Pajevic, S., Pierpaoli, C, Duda, J., and Aldroubi, A. (2000). In vivo fiber tractography using DT-MRI data. Magn Reson Med 44, 625-632.
16. Beckmann, C. F., DeLuca, M., Devlin, J. T., and Smith, S. M. (2005). Investigations into resting-state connectivity using independent component analysis. Philos Trans RSoc LondB 360, 1001-1013.
17. Beckmann, M., Johansen-Berg, H., and Rushworth, M. F. S. (2009). Connectivity-based parcellation of human cingulate cortex and its relation to functional specialization. J Neurosci 29, 1175-1190.
18. Behrens, T. E. J., and Johansen-Berg, H. (2005). Relating connectional architecture to grey matter function using diffusion imaging. Philos Trans R Soc LondB 360, 903-911.
19. Behrens, T. E. J., Johansen-Berg, H., Jbabdi, S., Rushworth, M. F. S., and Woolrich, M. W. (2007). Probabilistic diffusion tractography with multiple fiber orientations: What can we gain? Neuroimage 34, 144-155.
20. Behrens, T. E. J., Johansen-Berg, H., Woolrich, M. W., Smith, S. M., Wheeler-Kingshott, C. A. M., Boulby, P. A., Barker, G. J., Sillery, E. L., Sheehan, K., Ciccarelli, O., Thompson, A. J., Brady, J. M., and Matthews, P. M. (2003a). Non-invasive mapping of connections between human thalamus and cortex using diffusion imaging. Nat Neurosci 6, 750-757.
21. Behrens, T. E. J., Woolrich, M. W., Jenkinson, M., Johansen-Berg, H., Nunes, R. G., Clare, S., Matthews, P. M., Brady, J. M., and Smith, S. M. (2003b). Characterization and propagation of uncertainty in diffusion-weighted MR imaging. Magn ResonMed 50, 1077-1088.
22. Belmalih, A., Borra, E., Contini, M., Gerbella, M., Rozzi, S., and Luppino, G. (2009). Multimodal architectonic subdivision of the rostral part (area F5) of the macaque ventral premotor cortex. J Comp Neurol 512, 183-217.
23. Berman, J. I., Chung, S. W., Mukherjee, P., Hess, C. P., Han, E. T., and Henry, R. G (2008). Probabilistic streamline g-ball tractography using the residual bootstrap. Neuroimage 39, 215-222.
24. Birn, R. M., Diamond, J. B., Smith, M. A., and Bandettini, P. A. (2006). Separating respiratory-variation-related fluctuations from neuronal-activity-related fluctuations in fMRI. Neuroimage 31, 1536-1548.
25. Birn, R. M., Murphy, K., and Bandettini, P. A. (2008). The effect of respiration variations on independent component analysis results of resting state functional connectivity. Hum Brain Mapp 29, 740-750.
26. Birn, R. M., Smith, M. A., Jones, T. B., and Bandettini, P. A. (2008). The respiration response function: The temporal dynamics of fMRI signal fluctuations related to changes in respiration. Neuroimage 40, 644-654.
27. Biswal, B. B., Mennes, M., Zuo, X.-N., Gohel, S., Kelly, C, Smith, S. M., Beckmann, C. F., Adelstein, J. S., Buckner, R. L., Colcombe, S., Dogonowski, A.-M., Ernst, M., Fair, D., Hampson, M., Hoptman, M. J., Hyde, J. S., Kiviniemi, V. J., Kotter, R., Li, S.-J., Lin, C.-P., Lowe, M. J., Mackay, C, Madden, D. J., Madsen, K. H., Margulies, D. S., Mayberg, H. S., McMahon, K., Monk, C. S., Mostofsky, S. H., Nagel, B. J., Pekar, J. J., Peltier, S. J., Petersen, S. E., Riedl, V., Rombouts, S. A. R. B., Rypma, B., Schlaggar, B. L., Schmidt, S., Seidler, R. D., Siegle, G J., Sorg, C, Teng, G.-J., Veijola, J., Villringer, A., Walter, M., Wang, L., Weng, X.-C, Whitfield-Gabrieli, S., Williamson, P., Windischberger, C, Zang, Y.-F., Zhang, H.-Y., Castellanos, F. X., and Milham, M. M. (2010). Toward discovery science of human brain function. Proc NatlAcadSci USA 107, 4734-4739.
28. Biswal, B., Yetkin, F. Z., Haughton, V. M., and Hyde, J. S. (1995). Functional connectivity in the motor cortex of resting human brain using echo-planar MRI. Magn Reson Med 34, 537-541.
29. Blatt, G. J., Pandya, D. N., and Rosene, D. L. (2003). Parcellation of cortical afferents to three distinct sectors in the parahippocampal gyrus of the rhesus monkey: An anatomical and neurophysiological study. J Comp Neurol 466, 161-179.
30. Bock, N. A., Hashim, E., Kocharyan, A., and Silva, A. C. (2011). Visualising myeloarchitecture with magnetic resonance imaging in primates. Ann NY AcadSci 1225, E171-E181.
31. Bridge, H., Clare, S., Jenkinson, M., Jezzard, P., Parker, A. J., and Matthews, P. M. (2005). Independent anatomical and functional measures of the V1/V2 boundary in human visual cortex. JVis 5, 93-102.
32. Brodmann, K. (1909). Localisation in the Cerebral Cortex. New York: Springer.
33. Broser, P., Vargha-Khadem, F., and Clark, C. A. (2011). Robust subdivision of the thalamus in children based on probability distribution functions calculated from probabilistic tractography. Neuroimage 57, 403-415.
34. Buckner, R. L., and Vincent, J. L. (2007). Unrest at rest: Default activity and spontaneous network correlations. Neuroimage 37, 1091-1096.
35. Buckner, R. L. (2010). Human functional connectivity: New tools, unresolved questions. Proc Natl Acad Sci USA 107, 10769-10770.
36. Buckner, R. L., Krienen, F. M., Castellanos, A., Diaz, J. C, and Yeo, B. T. T. (2011). The organization of the human cerebellum estimated by intrinsic functional connectivity. J Neurophysiol 106, 2322-2345.
37. Buckner, R. L., Sepulcre J., Talukdar, T., Krienen, F. M., Liu, H., Hedden, T., Andrews-Hanna, J. R., Sperling, R. A., and Johnson, K. A. (2009). Cortical hubs revealed by intrinsic functional connectivity: Mapping, assessment of stability, and relation to Alzheimer's disease. JNeurosci 29, 1860-1873.
38. Bullmore, E. T., and Bassett, D. S. (2011). Brain graphs: Graphical models of the human brain connectome. Ann Rev Clin Psychol 7, 113-40.
39. Bullmore, E., and Sporns, O. (2009). Complex brain networks: Graph theoretical analysis of structural and functional systems. Nat Rev Neurosci 10, 186-198.
40. Carmichael, S. T., and Price, J. L. (1994). Architectonic subdivision of the orbital and medial prefrontal cortex in the macaque monkey. JComp Neurol 346, 366-402.
41. Caspers, S., Eickhoff, S. B., Geyer, S., Scheperjans, F., Mohlberg, H., Zilles, K., and Amunts, K. (2008). The human inferior parietal lobule in stereotaxic space. Brain Struct Fund 212,481-495.
42. Caspers, S., Geyer, S., Schleicher, A., Mohlberg, H., Amunts, K., and Zilles, K. (2006). The human inferior parietal cortex: Cytoar chi tectonic parcellation and interindividual variability. Neuroimage 33, 430-448.
43. Catani, M., Allin, M. P. G., Husain, M., Pugliese, L., Mesulam, M. M., Murray, R. M., and Jones, D. K. (2007). Symmetries in human brain language pathways correlate with verbal recall. Proc Natl Acad Sci USA 104, 17163-17168.
44. Catani, M., and Thiebaut de Schotten, M. (2008). A diffusion tensor imaging tractography atlas for virtual in vivo dissections. Cortex 44, 1105-1132.
45. Catani, M., Jones, D. K., and ffytche, D. H. (2005). Perisylvian language networks of the human brain. Ann Neurol 57, 8-16.
46. Cauda, F., Costa, T., Torta, D. M. E., Sacco, K., D'Agata, F., Duca, S., Geminiani, G., Fox, P. T., and Vercelli, A. (2012). Meta-analytic clustering of the insular cortex: Characterising the meta-analytic connectivity of the insula when involved in active tasks. Neuroimage 62, 343-355.
47. Cauda, F., D'Agata, F., Sacco, K., Duca, S., Geminiani, G., and Vercelli, A. (2011). Functional connectivity of the insula in the resting brain. Neuroimage 55, 8-23.
48. Cavada, C, and Goldman-Rakic, P. S. (1989). Posterior parietal cortex in rhesus monkey: I. Parcellation of areas based on distinctive limbie and sensory corticocortical connections. JComp Neurol 287, 393-421.
49. Cerliani, L., Thomas, R. M., Jbabdi, S., Siero, J. C. W., Nanetti, L., Crippa, A., Gazzola, V., D'Arceuil, H., and Keysers, C. (2011). Probabilistic tractography recovers a rostrocaudal trajectory of connectivity variability in the human insular cortex. Hum Brain Mapp [epub ahead of print].
50. Chang, C, Cunningham, J. P., and Glover, G. H. (2009). Influence of heart rate on the BOLD signal: The cardiac response function. Neuroimage 44, 857-869.
51. Chang, L. J., Yarkoni, T., Khaw, M. W., and Sanfrey, A. G. (2012). Decoding the role of the insula in human cognition: Functional parcellation and large-scale reverse inference. Cereb Cortex [epub ahead of print].
52. Chuang, K. H., and Chen, J. H. (2001). EVIPACT: Image-based physiological artifacts estimation and correction technique for functional MRI. Magn Reson Med 46, 344-353.
53. Chung, S. W., Lu, Y., and Henry, R. G. (2006). Comparison of bootstrap approaches for estimation of uncertainties of DTI parameters. Neuroimage 33, 531-541.
54. Cloutman, L. L., Binney, R. J., Drakesmith, M., Parker, G. J. M., and Lambon Ralph, M. A. (2012). The variation of function across the human insula mirrors its patterns of structural connectivity: Evidence from in vivo probabilistic tractography. Neuroimage 59,3514-3521.
55. Cohen, A. L., Fair, D. A., Dosenbach, N. U. F., Miezin, F. M., Dierker, D., Van Essen, D. C, Schlaggar, B. L., and Petersen, S. E. (2008). Defining functional areas in individual human brains using resting functional connectivity MRI. Neuroimage 41, 45-57.
56. Cohen-Adad, J., Polimeni, J. R., Helmer, K. G, Benner, T., McNab, J. A., Wald, L. L., Rosen, B. R., and Mainero, C. (2012). T2* mapping and B0 orientation-dependence at 7 T reveal cyto- and myeloarchitecture organization of the human cortex. Neuroimage 60, 1006-1014.
57. Cole, D. M., Smith, S. M., and Beckmann, C. F. (2010). Advances and pitfalls in the analysis and interpretation of resting-state fMRI data. Front Syst Neurosci 4, 8.
58. Conturo, T. E., Lori, N. F., Cull, T. S., Akbudak, E., Snyder, A. Z., Shimony, J. S., McKinstry, R. C, Burton, H., and Raichle, M. E. (1999). Tracking neuronal fiber pathways in the living human brain. Proc Natl Acad Sci USA 96, 10422-10427.
59. Craddock, R. C, James, G. A., Holtzheimer, P. E., Hu, X. P., and Mayberg, H. S. (2011). A whole brain fMRI atlas generated via spatially constrained spectral clustering. Hum Brain Mapp [epub ahead of print].
60. Crippa, A., Cerliani, L., Nanetti, L., andRoerdink, J.B.T.M. (2011). Heuristics for connectivity-based brain parcellation of SMA/pre-SMA through force-directed graph layout. Neuroimage 54, 2176-2184.
61. Cruz-Rizzolo, R. J., De Lima, M. A. X., Ervolino, E., de Oliveira, J. A., and Casatti, C. A. (2011). Cyto-, myelo- and chemoarchitecture of the prefrontal cortex of the Cebus monkey. BMC Neurosci 12, 6.
62. Damoiseaux, J. S., and Greicius, M. D. (2009). Greater than the sum of its parts: A review of studies combining structural connectivity and resting-state functional connectivity. Brain Struct Fund 213, 525-533.
63. Dargi, F., Oghabian, M. A., Ahmadian, A., Zadeh H. S., Zarei, M., and Boroomand, A. (2007). Modified fast marching tractography algorithm and its ability to detect fiber crossing. Conf Proc IEEE EngMedMiol Soc 2007, 319-322.
64. Deco, G., and Corbetta, M. (2011). The dynamical balance of the brain at rest. Neuroscientist 17, 107-123.
65. Devlin, J. T., Sillery, E. L., Hall, D. A., Hobden, P., Behrens, T. E. J., Nunes, R. G, Clare, S., Matthews, P. M., Moore, D. R., and Johansen-Berg, H. (2006). Reliable identification of the auditory thalamus using multi-modal structural analyses. Neuroimage 30, 1112-1120.
66. di Marino S. A., Margulies, D. S., Kelly, A. M. C, Uddin, L. Q., Shehzad, Z., Biswal, B., Walters, J. R., Castellanos, F. X., and Milham, M. P. (2008). Functional connectivity of human striatum: A resting state fMRI study. Cereb Cortex 18, 2735-2747.
67. Ding, S.-L., Van Hoesen, G. W., Cassell, M. D., and Poremba, A. (2009). Parcellation of human temporal polar cortex: A combined analysis of multiple cytoar chi tectonic, chemoarchitectonic, and pathological markers. J Comp Neurol 514, 595-623.
68. Draganski, B., Kherif, F., Kloppel, S., Cook, P. A., Alexander, D. C, Parker, G. J. M., Deichmann, R., Ashburner, J., and Frackowiak, R. S. J. (2008). Evidence for segregated and integrative connectivity patterns in the human basal ganglia. J Neurosci 28, 7143-7152.
69. Dyrby, T. B., Sogaard, L. V., Parker, G J., Alexander, D. C, Lind, N. M., Baare, W. F. C, Hay-Schmidt, A., Eriksen, N., Pakkenberg, B., Paulson, O. B., and Jelsing, J. (2007). Validation of in vitro probabilistic tractography. Neuroimage 37, 1267-1277.
70. Eickhoff, S. B., Bzdok, D., Laird, A. R., Roski, C, Caspers, S., Zilles, K., and Fox, P. T. (2011). Co-activation patterns distinguish cortical modules, their connectivity and functional differentiation. Neuroimage 57, 938-949.
71. Eickhoff, S. B., Schleicher, A., Scheperjans, F., Palomero-Gallagher, N., and Zilles, K. (2007). Analysis of neurotransmitter receptor distribution patterns in the cerebral cortex. Neuroimage 34, 1317-1330.
72. Eickhoff, S. B., Schleicher, A., Zilles, K., and Amunts, K. (2006). The human parietal operculum. I. Cytoar chi tectonic mapping of subdivisions. Cereb Cortex 16, 254-267.
73. Eickhoff, S. B., Stephan, K. E., Mohlberg, H., Grefkes, C, Fink, G. R., Amunts, K., and Zilles, K. (2005). A new SPM toolbox for combining probabilistic cytoar chi tectonic maps and functional imaging data. Neuroimage 25, 1325-1335.
74. Eickhoff, S., Walters, N. B., Schleicher, A., Kril, J., Egan, G F., Zilles, K., Watson, J. D. G, and Amunts, K. (2005). High-resolution MRI reflects myeloarchitecture and cytoarchitecture of human cerebral cortex. Hum Brain Mapp 24, 206-215.
75. Elias, W. J., Zheng, Z. A., Domer, P., Quigg, M., and Pouratian, N. (2012). Validation of connectivity-based thalamic segmentation with direct electrophysiologic recordings from human sensory thalamus. Neuroimage 59, 2025-2034.
76. Felleman, D. J., and Van Essen, D. C. (1991). Distributed hierarchical processing in the primate cerebral cortex. Cereb Cortex 1, 1-47.
77. Fingelkurts, A. A., Fingelkurts, A. A., and Kahkonen, S. (2005). Functional connectivity in the brain - is it an elusive concept? Neurosci Biobehav Rev 28, 827-836.
78. Fischl, B., Rajendran, N., Busa, E., Augustinack, J., Hinds, O., Yeo, B. T. T., Mohlberg, H., Amunts, K., and Zilles, K. (2008). Cortical folding patterns and predicting cytoarchitecture. Cereb Cortex 18, 1973-1980.
79. Ford, A., McGregor, K. M., Case, K., Crosson, B., and White, K. D. (2010). Structural connectivity of Broca's area and medial frontal cortex. Neuroimage 52, 1230-1237.
80. Fox, M. D., and Raichle, M. E. (2007). Spontaneous fluctuations in brain activity observed with functional magnetic resonance imaging. Nat Rev Neurosci 8, 700-711.
81. Fox, M. D., Snyder, A. Z., Vincent, J. L., Corbetta, M., Van Essen, D. C, and Raichle, M. E. (2005). The human brain is intrinsically organized into dynamic, anticorrelated functional networks. Proc Natl AcadSci USA 102, 9673-9678.
82. Frey, S., Campbell, J. S. W., Pike, G. B., and Petrides, M. (2008). Dissociating the human language pathways with high angular resolution diffusion fiber tractography. J Neurosci 28, 11435-11444.
83. Friston, K. J., Frith, C. D., Liddle, P. F., and Frackowiak, R. S. J. (1993). Functional connectivity: The principal-component analysis of large (PET) data sets. J Cereb Blood Flow Metab 13, 5-14.
84. Gallay, D. S., Gallay, M. N., Jeanmonod, D., Rouiller, E. M., and Morel, A. (2012). The insula of Reil revisited: Multiarchitectonic organization in macaque monkeys. Cereb Cortex 22, 175-190.
85. Gerbella, M., Belmalih, A., Borra, E., Rozzi, S., and Luppino, G. (2010). Cortical connections of the macaque caudal ventrolateral prefrontal areas 45A and 45B. Cereb Cortex 20, 141-168.
86. Gerbella, M., Belmalih, A., Borra, E., Rozzi, S., and Luppino, G. (2007). Multimodal architectonic subdivision of the caudal ventrolateral prefrontal cortex of the macaque monkey. Brain Struct Fund 212, 269-301.
87. Geyer, S., Luppino, G., Ekamp, H., and Zilles, K. (2005). The macaque inferior parietal lobule: Cytoarchitecture and distribution pattern of serotonin 5-HT1A binding sites. Anat Embryol 210, 353-362.
88. Geyer, S., Schleicher, A., and Zilles, K. (1997). The somatosensory cortex of human: Cytoarchitecture and regional distributions of receptor-binding sites. Neuroimage 6, 27-45.
89. Geyer, S., Schleicher, A., and Zilles, K. (1999). Areas 3a, 3b, and 1 of human primary somatosensory cortex. I. Microstructural organization and interindividual variability. Neuroimage 10, 63-83.
90. Geyer, S., Schormann, T., Mohlberg, H., and Zilles, K. (2000). Areas 3a, 3b, and 1 of human primary somatosensory cortex. II. Spatial normalization to standard anatomical space. Neuroimage 11, 684-696.
91. Geyer, S., Weiss, M., Reimann, K., Lohmann, G., and Turner, R. (2011). Microstructural parcellation of the human cerebral cortex - from Brodmann's post-mortem map to in vivo mapping with high-field magnetic resonance imaging. Front Hum Neurosci 5, 19.
92. Glasser, M. F., and Rilling, J. K. (2008). DTI tractography of the human brain's language pathways. Cereb Cortex 18, 2471-2482.
93. Glasser, M. F., and Van Essen, D. C. (2011). Mapping human cortical areas in vivo based on myelin content as revealed by Tl- and T2-weighted MRI. J Neurosci 31, 11597-11616.
94. Gorbach, N. S., Schutte, C, Melzer, C, Goldau, M., Sujazow, O., Jitsev, J., Douglas, T., and Tittgemeyer, M. (2011). Hierarchical information-based clustering for connectivity-based cortex parcellation. FrontNeuroinform 5, 18.
95. Gregoriou, G. G., Borra, E., Matelli, M., and Luppino, G. (2006). Architectonic organization of the inferior parietal convexity of the macaque monkey. J Comp Neurol 496, 422-451.
96. Greicius, M. D., Supekar, K., Menon, V., and Dougherty, R. F. (2009). Resting-state functional connectivity reflects structural connectivity in the default mode network. Cereb Cortex 19, 72-78.
97. Hagmann, P., Jonasson, L., Maeder, P., Thiran, J.-P., Wedeen, V. J., and Meuli, R. (2006). Understanding diffusion MR imaging techniques: From scalar diffusion-weighted imaging to diffusion tensor imaging and beyond. Radiographics, 26, S205-S223.
98. Haroon, H. A., Morris, D. M., Embleton, K. V., Alexander, D. C, and Parker, G. J. M. (2009). Using the model-based residual bootstrap to quantify uncertainty in fiber orientations from q-ball analysis. IEEE TransMedImaging 28, 535-550.
99. Hartigan, J. A., and Wong, M. A. (1979). A k-means clustering algorithm. JR Stat Soc 28, 100-108.
100. Hilgetag, C. C, and Grant, S. (2010). Cytoarchitectural differences are a key determinant of laminar projection origins in the visual cortex. Neuroimage 51, 1006-1017.
101. Hilgetag, C.-C, and Grant, S. (2000). Unformity, specificity and variability of corticocortical connectivity. Philos Trans R Soc LondB 355, 7-20.
102. Hof, P. R., and Morrison, J. H. (1995). Neurofilament protein defines regional patterns of cortical organization in the macaque monkey visual system: A quantitative immunohistochemical analysis. JComp Neurol 352, 161-186.
103. Honey, C. J., Sporns, O., Cammoun, L., Gigandet, X., Thiran, J. P., Meuil, R., and Hagmann, P. (2009). Predicting human resting-state functional connectivity from structural connectivity. Proc NatlAcadSci USA 106, 2035-2040.
104. Honey, C. J., Thivierge, J.-P., and Sporns, O. (2010). Can structure predict function in the human brain? Neuroimage 52, 766-776.
105. Horng, S. H., and Sur, M. (2006). Visual activity and cortical rewiring: Activity-dependent plasticity of cortical networks. Prog Brain Res 157, 3-11.
106. Jacobson, S., and Marcus, E. M. (2008). Neuroanatomy for the Neuroscientist. New York: Springer.
107. Jakab, A., Molnar, P. P., Bogner, P., Beres, M., and Berenyi, E. L. (2012). Connectivity-based parcellation reveal interhemispheric differences in the insula. Brain Topogr 25, 264-271.
108. Jbabdi, S., and Johansen-Berg, H. (2011). Tractography: Where do we go from here? Brain Connect 1, 169-183.
109. Jbabdi, S., Woolrich, M. W., and Behrens, T. E. J. (2009). Multiple-subjects connectivity-based parcellation using hierarchical Dirichlet process mixture models. Neuroimage 44, 373-384.
110. Jian, B., and Vemuri, B. C. (2007). A unified computational framework for deconvolution to reconstruct multiple fibers from diffusion weighted MRI. IEEE Trans MedImaging 26, 1464-1471.
111. Johansen-Berg, H., and Behrens, T. E. J. (2009). Diffusion MRI: From Quantitative Measurement to In-Vivo Neuroanatomy. Amsterdam: Elsevier.
112. Johansen-Berg, H., and Matthews, P. M. (2002). Attention to movement modulates activity in sensori-motor areas, including primary motor cortex. Exp Brain Res 142, 13-24.
113. Johansen-Berg, H., and Rushworth, M. F. S. (2009). Using diffusion imaging to study human connectional anatomy. Ann Rev Neurosci 32, 75-94.
114. Johansen-Berg, H., Behrens, T. E. J., Robson, M. D., Drobnjak, I., Rushworth, M. F. S., Brady, J. M., Smith, S. M., Higham, D. J., and Matthews, P. M. (2004). Changes in connectivity profiles define functionally distinct regions in human medial frontal cortex. Proc Natl Acad Sci USA 101, 13335-13340.
115. Johansen-Berg, H., Behrens, T. E. J., Sillery, E., Ciccarelli, O., Thompson, A. J., Smith, S. M., and Matthews, P. M. (2005). Functional-anatomical validation and individual variation of diffusion tractography-based segmentation of the human thalamus. Cereb Cortex 15, 31-39.
116. Johnson, S. C. (1967). Hierarchical clustering schemes. Psychometrika 32, 241-254.
117. Jones, D. K. (2008). Studying connections in the living brain with diffusion MRI. Cortex 44, 936-952.
118. Jones, D. K. (2008). Tractography gone wild: Probabilistic fiber tracking using the wild bootstrap with diffusion tensor MRI. IEEE Trans Med Imaging 27, 1268-1274.
119. Jones, D. K. (2010). Challenges and limitations of quantifying brain connectivity in vivo with diffusion MRI. ImagingMedl, 341-355.
120. Jones, D. K., and Pierpaoli, C. (2005). Confidence mapping in diffusion tensor magnetic resonance imaging tractography using a bootstrap approach. Magn ResonMed 53, 1143-1149.
121. Jones, D. K., Simmons, A., Williams, S. C. R., and Horsfield, M. A. (1999). Non-invasive assessment of axonal fiber connectivity in the human brain via diffusion tensor MRI. Magn Reson Med 42, 37-41.
122. Jones, E. G., and Burton, H. (1976). Areal differences in the laminar distribution of thalamic afferents in cortical fields of the insular, parietal and temporal regions of primates. J Comp Neurol 168, 197-248.
123. Kahnt, T., Chang, L. J., Park, S. Q., Heinzle, J., andHaynes, J.-D. (2012). Connectivity-based parcellation of the human orbitofrontal cortex. JNeurosci 32, 6240-6250.
124. Karkar, S., Faisan, S., Thoraval, L., and Foucher, J. R. (2009). A multi-level parcellation approach for brain functional connectivity analysis. Conf Proc IEEE EngMedBiol Soc 2009, 3497-3500.
125. Keidel, J. L., Welbourne, S. R., and Lambon Ralph, M. A. (2010). Solving the paradox of the equipotential and modular brain: A nuerocomputational model of stroke vs. slow-growing glioma. Neuropsychologia 48, 1716-1724.
126. Kelly, C, Biswal, B. B., Craddock, R. C, Castellanos, F. X., and Milham, M. P. (2012). Characterising variation in the functional connectome: Promise and pitfalls. Trends CognSci 16, 181-188.
127. Kelly, C, Toro, R., De Martino, A., Lox, C. L., Bellec, P., Castellanos, F. X., and Milham, M. P. (2012). A convergent functional architecture of the insula emerges across imaging modalities. Neuroimage 61, 1129-1142.
128. Kelly, C, Uddin, L. Q., Shehzad, Z., Margulies, D. S., Castellanos, F. X., Milham, M. P., and Petrides, M. (2010). Broca's region: Linking human brain functional connectivity data and non-human primate tracing anatomy studies. Eur J Neurosci 32, 383-398.
129. Kim, J.-H., Lee, J.-M., Jo, H. J., Kim, S. H., Lee, J. H., Kim, S. T., Seo, S. W., Cox, R. W., Na, D. L., Kim, S. I., and Saad, Z. S. (2010). Defining functional SMA and pre-SMA subregions in human MFC using resting state fMRI: Functional connectivity-based parcellation method. Neuroimage 49, 2375-2386.
130. Kiviniemi, V., Kantola, J. H., Jauhiainen, J., Hyvarinen, A., and Tervonen, O. (2003). Independent component analysis of nondeterministic fMRI signal sources. Neuroimage 19, 253-260.
131. Klein, J. C, Behrens, T. E. J., Robson, M. D., Mackay, C. E., Higham, D. J., and Johansen-berg, H. (2007). Connectivity-based parcellation of human cortex using diffusion MRI: Establishing reproducibility, validity and observer independence in BA 44/45 and SMA/pre-SMA. Neuroimage 34, 204-211.
132. Knosche, T. R., and Tittgemeyer, M. (2011). The role of long-range connectivity for the characterization of the functional-anatomical organization of the cortex. Front Syst Neurosci 5, 58.
133. Koch, M. A., Norris, D. G., and Hund-Georgiadis, M. (2002). An investigation of functional and anatomical connectivity using magnetic resonance imaging. Neuroimage 16, 241-250.
134. Kotter, R., Hilgetag, C. C, and Stephan, K. E. (2001a). Connectional characteristics of areas in Walker's map of primate prefrontal cortex. Neurocomput 38-40, 741-746.
135. Kotter, R., Stephan, K. E., Palomero-Gallagher, N., Geyer, S., Schleicher, A., and Zilles, K. (2001b). Multimodal characterization of cortical areas by multivariate analyses of receptor binding and connectivity data. Anat Embryol 204, 333-350.
136. Lambert, C, Zrinzo, L., Nagy, Z., Lutti, A., Hariz, M., Fołtynie, T., Draganski, B., Ashburner, J., and Frackowiak, R. (2012). Confirmation of functional zones within the human subthalamic nucleus: Patterns of connectivity and sub-parcellation using diffusion weighted imaging. Neuroimage 60, 83-94.
137. Lawes, I. N. C, Barrick, T. R., Murugam, V., Spierings, N., Evans, D. R., Song, M., and Clark, C. A. (2008). Atlas-based segmentation of white matter tracts of the human brain using diffusion tensor tractography and comparison with classical dissection. Neuroimage 39, 62-79.
138. Lazar, M., and Alexander, A. L. (2005). Bootstrap white matter tractography (BOOT-TRAC). Neuroimage 24, 524-532.
139. Le Bihan, D. (2007). The 'wet mind': Water and functional neuroimaging. Phys Med Biol 52, R57-R90.
140. Leh, S. E., Ptito, A., Chakravarty, M. M., and Strafella, A. P. (2007). Fronto-striatal connections in the human brain: A probabilistic diffusion tractography study. Neurosci Lett 419, 113-118.
141. Lehericy, S., Ducros, M., Van de Moortele, P.-F., Francois, C, Thivard, L., Poupon, C, Swindale, N., Ugurbil, K., and Kim, D.-K. (2004). Diffusion tensor fiber tracking shows distinct corticostriatal circuits in humans. Ann Neurol 55, 522-529.
142. Lloyd, S. P. (1982). Least squares quantization in PCM. IEEE Trans Inf Theory 28, 129-137.
143. Macey, P. M., Macey, K. E., Kumar, R., and Harper, R. M. (2004). A method for removal of global effects from fMRI time series. Neuroimage 22, 360-366.
144. Majewska, A. K., and Sur, M. (2006). Plasticity and specificity of cortical processing networks. Trends Neurosci 29, 323-329.
145. Makris, N., and Pandya, D. N. (2009). The extreme capsule in humans and rethinking of the language circuitry. Brain Struct Fund 213, 343-358.
146. Makris, N., Kennedy, D. N., Mclnerney, S., Sorensen, A. G., Wang, R., Caviness, V. S., and Pandya, D. N. (2005). Segmentation of subcomponents within the superior longitudinal fascicle in humans: A quantitative, in vivo, DT-MRI study. Cereb Cortex 15, 854-869.
147. Margulies, D. S., Bottger, J., Long, X., Lv, Y., Kelly, C, Schafer, A., Goldhahn, D., Abbushi, A., Milham, M. P., Lohmann, G., and Villringer, A. (2010). Resting developments: A review of fMRI post-processing methodologies for spontaneous brain activity. Magn ResonMater Phy, 23, 289-307.
148. Margulies, D. S., Kelly, A. M. C, Uddin, L. Q., Biswal, B. B., Castellanos, F. X., and Milham, M. P. (2007). Mapping the functional connectivity of anterior cingulated cortex. Neuroimage 37, 579-588.
149. Margulies, D. S., Vincent, J. L., Kelly, C, Lohmann, G., Uddin, L. Q., Biswal, B. B., Villringer, A., Castellanos, F. X., Milham, M. P., and Petrides, M. (2009). Precuneus shares intrinsic functional architecture in humans and monkeys. Proc Natl Acad Sci USA 106, 20069-20074.
150. Mars, R. B., Jbabdi, S., Sallet, J., O'Reilly, J. X., Croxson, P. L., Olivier, E., Noonan, M. P., Bergmann, C, Mitchell, A. S., Baxter, M. G., Behrens, T. E. J., Johansen-Berg, H., Tomassini, V., Miller, K. L., and Rushworth, M. F. S. (2011a). Diffusion-weighted imaging tractography-based parcellation of the human parietal cortex and comparison with human and macaque resting-state functional connectivity. J Neurosci 31, 4087-4100.
151. Mars, R. B., Sallet, J., Schuffelgen, U., Jbabdi, S., Toni, I., and Rushworth, M. F. S. (2011b). Connectivity-based subdivisions of the human right temporoparietal junction area: Evidence for different areas participating in different cortical networks. Cereb Cortex [epub ahead of print].
152. McKeown, M. J., Makeig, S., Brown, G. G., Jung, T.-P., Kindermann, S. S., Bell, A. J., and Sejnowski, T. J. (1998). Analysis of fMRI data by blind separation into independent spatial components. Hum BrainMapp 6, 160-188.
153. Medalla, M., and Barbas, H. (2006). Diversity of laminar connections linking periarcuate and lateral intraparietal areas depends on cortical structure. Eur J Neurosci 23, 161-179.
154. Meindl, T., Teipel, S., Elmouden, R., Mueller, S., Koch, W., Dietrich, O., Coates, U., Reiser, M. and Glaser, C. (2010). Test-retest reproducibility of the default-mode network in healthy individuals. Hum Brain Mapp 31, 237-246.
155. Menke, R. A., Jbabdi, S., Miller, K. L., Matthews, P. M., and Zarei, M. (2010). Connectivity-based segmentation of the substantia nigra in human and its implications in Parkinson's disease. Neuroimage 52, 1175-1180.
156. Mennes, M., Kelly, C, Colcombe, S., Castellanos, F. X., and Milham, M. P. (2012). The extrinsic and intrinsic functional architectures of the human brain are not equivalent. Cereb Cortex [epub ahead of print].
157. Mesulam, M. M. (2006). Foreword, in Fiber Pathways of the Brain, eds. J. D. Schmahmann and D. N. Pandya (New York: Oxford University Press), 9-10.
158. Mesulam, M. M., and Mufson, E. J. (1982). Insula of the old world monkey. I: Architectonics in the insulo-orbito-temporal component of the paralimbic brain. JComp Neurol 212, 1-22.
159. Mori, S., Crain, B. J., Chacko, V. P., and Van Zijl, P. C. (1999). Three-dimensional tracking of axonal projections in the brain by magnetic resonance imaging. Ann Neurol 45, 265-269.
160. Mori S. (2007). Introduction to Diffusion Tensor Imaging. Amsterdam: Elsevier.
161. Morosan, P., Rademacher, J., Schleicher, A., Amunts, K., Schormann, T., and Zilles, K. (2001). Human primary auditory cortex: Cytoar chi tectonic subdivisions and mapping into a spatial reference system. Neuroimage 13, 684-701.
162. Morosan, P., Schleicher, A., Amunts, K., and Zilles, K. (2005). Multimodal architectonic mapping of human superior temporal gyrus. Anat Embryol 210, 401-406.
163. Mukherjee, P., Berman, J. I., Chung, S. W., Hess, C. P., and Henry, R. G. (2008a). Diffusion tensor MR imaging and fiber tractography: Theoretical underpinnings. Am J Neuroradiol 29, 632-641.
164. Mukherjee, P., Chung, S. W., Berman, J. I., Hess, C. P., and Henry, R. G. (2008b). Diffusion tensor MR imaging and fiber tractography: Technical considerations. Am J Neuroradiol 29, 843-852.
165. Murphy, K., Birn, R. M., Handwerker, D. A., Jones, T. B., and Bandettini, P. A. (2009). The impact of global signal regression on resting state correlations: Are anti-correlated networks introduced? Neuroimage 44, 893-905.
166. Nanetti, L., Cerliani, L., Gazzola, V., Renken, R., and Keysers, C. (2009). Group analyses of connectivity-based cortical parcellation using repeated &-means clustering. Neuroimage 47, 1666-1677.
167. Nelson, S. M., Cohen, A. L., Power, J. D., Wig, G S., Mienin, F. M., Wheeler, M. E., Velanova, K., Donaldson, D. I., Phillips, J. S., Schlaggar, B. L., and Petersen, S. E. (2010). A parcellation scheme for human left lateral parietal cortex. Neuron, 67, 156-170.
168. O'Muircheartaigh, J., Vollmar, C, Traynor, C, Barker, G. J., Kumari, V., Symms, M. R., Thompson, P., Duncan, J. S., Koepp, M. J., and Richardson, M. P. (2011). Clustering probabilistic tractograms using independent component analysis applied to the thalamus. Neuroimage 54, 2020-2032.
169. Ongur, D., Ferry, A. T., and Price, J. L. (2003). Architectonic subdivision of the human orbital and medial prefrontal cortex. J Comp Neurol 460, 425-449.
170. Osechinskiy, S., and Kruggel, F. (2009). Quantitative comparison of high-resolution MRI and myelin-stained histology of the human cerebral cortex. Conf Proc IEEE EngMedBiol Soc 2009, 85-89.
171. Padberg, J., Seltzer, B., and Cusick, C. G. (2003). Architectonics and cortical connections of the upper bank of the superior temporal sulcus in the rhesus monkey: An analysis in the tangential plane. JComp Neurol 467, 418-434.
172. Pallas, S. L. (2001). Intrinsic and extrinsic factors that shape neocortical specification. Trends Neurosci 24, 417-423.
173. Parker, G. J. M., and Alexander, D. C. (2003). Probabilistic Monte Carlo based mapping of cerebral connections utilizing whole-brain crossing fiber information. Inf Process Medlmaging 18, 684-695.
174. Parker, G. J. M., and Alexander, D. C. (2005). Probabilistic anatomical connectivity derived from the microscopic persistence angular structure of cerebral tissue. Philos Trans R SocLondB 360, 893-902.
175. Parker, G. J. M., Haroon, H. A., and Wheeler-Kingshott, C. A. M. (2003). A framework for a streamline-based probabilistic index of connectivity PICo using a structural interpretation of MRI diffusion measurements. J Magn Re son Imaging 18, 242-254.
176. Parker, G. J. M., Luzzi, S., Alexander, D. C, Wheeler-Kingshott, C. A. M., Ciccarelli, O., and Lambon Ralph, M. A. (2005). Lateralization of ventral and dorsal auditory-language pathways in the human brain. Neuroimage 24, 656-666.
177. Parker, G. J. M., Stephan, K. E., Barker, G. J., Rowe, J. B., MacManus, D. G., Wheeler-Kingshott, C. A. M., Ciccarelli, O., Passingham, R. E., Spinks, R. L., Lemon, R. N., and Turner, R. (2002). Initial demonstration of in vivo tracing of axonal projections in the macaque brain and comparison with the human brain using diffusion tensor imaging and fast marching tractography. Neuroimage 15, 797-809.
178. Passingham, R. E., Stephan, K. E., and Kotter, R. (2002). The anatomical basis of functional localization in the cortex. Nat Rev Neurosci 3, 606-616.
179. Perrin, M., Cointepas, Y., Cachia, A., Poupon, C, Thirion, B., Riviere, D., Cathier, P., El Kouby, V., Constantinesco, A., Le Bihan, D., and Mangin, J.-F. (2008). Connectivity-based parcellation of the cortical mantle using q-ball diffusion imaging. Int JBiomed Imaging 208, 368406.
180. Petrides, M., and Pandya, D. N. (2009). Distinct parietal and temporal pathways to the homologues of Broca's area in the monkey. PLoS Biol 7, el000170.
181. rd Ed.). Sunderland, MA: Sinauer Associates.
182. Ragsdale, C. W., and Grove, E. A. (2001). Patterning the mammalian cerebral cortex. Curr Opin Neurobiol 11, 50-58.
183. Raichle, M. E. (2011). The restless brain. Brain Connect 1, 3-12.
184. Rakic, P., Suner, I., and Williams, R. W. (1991). A novel cytoar chi tectonic area induced experimentally within the primate visual cortex. Proc Natl AcadSci USA 88, 2083-2087.
185. Rao, S. M., Binder, J. R., Bandettini, P. A., Hammeke, T. A., Yetkin, F. Z., Jesmanowicz, A., Lisk, L. M., Morris, G. L., Mueller, W. M., Estkowski, L. D., Wong, E. C, Haughton, V. M., and Hyde, J. S. (1993). Functional magnetic resonance imaging of complex human movements. Neurology 43, 2311-2318.
186. Rempel-Clower, N. L., and Barbas, H. (2000). The laminar pattern of connections between prefrontal and anterior temporal cortices in the rhesus monkey is related to cortical structure and function. Cereb Cortex 10, 851-865.
187. Rivier, F., and Clarke, S. (1997). Cytochrome oxidase, acetylcholinesterase, and NADPH-diaphorase staining in human supratemporal and insular cortex: Evidence for multiple auditory areas. Neuroimage 6, 288-304.
188. Roca, P., Riviere, D., Guevara, P., Poupon, C, and Mangin, J.-F. (2009). Tractography-based parcellation of the cortex using a spatially-informed dimension reduction of the connectivity matrix. MedImage Comput Comput Assist Interv 12, 935-942.
189. Roca, P., Tucholka, A., Riviere, D., Guevara, P., Poupon, C, and Mangin, J.-F. (2010). Inter-subject connectivity based parcellation of a patch of cerebral cortex. Med Image Comput Comput Assist Interv 13, 347-354.
190. Rockland, K. S., and Pandya, D. N. (1979). Laminar origins and terminations of cortical connections of the occipital lobe in the rhesus monkey. Brain Res 179, 3-20.
191. Roe, A. W., Pallas, S. L., Kwon, Y. H., and Sur, M. (1992). Visual projections routed to the auditory pathway in ferrets: Receptive fields of visual neurons in primary auditory cortex. JNeurosci 12, 3651-3664.
192. Roy, A. K., Shehzad, Z., Margulies, D. S., Kelly, A. M. C, Uddin, L. Q., Gotimer, K., Biswal, B. B., Castellanos, F. X., and Milham, M. P. (2009). Functional connectivity of the human amygdala using resting state fJVIRI. Neuroimage 45, 614-626.
193. Rozzi, S., Calzavara, R., Belmalih, A., Borra, E., Gregoriou, G. G., Matelli, M., and Luppino, G. (2006). Cortical connections of the inferior parietal cortical convexity of the macaque monkey. Cereb Cortex 16, 1389-1417.
194. Rubinov, M., and Sporns, O. (2010). Complex network measures of brain connectivity: Uses and interpretations. Neuroimage 52, 1059-1069.
195. Rubinov, M., and Sporns, O. (2010). Complex network measures of brain connectivity: Uses and interpretations. Neuroimage 52, 1059-1069.
196. Rykhlevskaia, E., Gratton, G., and Fabiani, M. (2008). Combining structural and functional neuroimaging data for studying brain connectivity: A review. Psychophysiology 45, 173-187.
197. Saur, D., Kreher, B. W., Schnell, S., Kummerer, D., Kellmeyer, P., Vry, M.-S., Umarova, R., Musso, M., Glauche, V., Abel, S., Huber, W., Rijntjes, M., Hennig, J., and Weiller, C. (2008). Ventral and dorsal pathways for language. Proc Natl AcadSci USA 105, 18035-18040.
198. Saur, D., Schelter, B., Schness, S., Kratochvil, D., Kupper, H., Kellmeyer, P., Kummerer, D., Kloppel, S., Glauche, V., Lange, R., Mader, W., Feess, D., Timmer, J., and Weiller, C. (2010). Combining functional and anatomical connectivity reveals brain networks for auditory language comprehension. Neuroimage 49, 3187-3197.
199. Scheperjans, F., Grefkes, C, Palomero-Gallagher, N., Schleicher, A., and Zilles, K. (2005). Subdivisions of human parietal area 5 revealed by quantitative receptor autoradiography: A parietal region between motor, somatosensory, and cingulated cortical areas. Neuroimage 25, 975-992.
200. Scheperjans, F., Hermann, K., Eickhoff, S. B., Amunts, K., Schleicher, A., and Zilles, K. (2008). Observer-independent cytoarchitectonic mapping of the human superior parietal cortex. Cereb Cortex 18, 846-867.
201. Scheperjans, F., Palomero-Gallagher, N., Grefkes, C, Schleicher, A., and Zilles, K. (2005). Transmitter receptors reveal segregation of cortical areas in the human superior parietal cortex: Relations to visual and somatosensory regions. Neuroimage 28, 362-379.
202. Schleicher, A., Amunts, K., Geyer, S., Morosan, P., and Zilles, K. (1999). Observer-independent method for microstructural parcellation of cerebral cortex: A quantitative approach to cytoarchitectonics. Neuroimage 9, 165-177.
203. Schleicher, A., Palomero-Gallagher, N., Morosan, P., Eickhoff, S. B., Kowalski, T., de Vos, K., Amunts, K., and Zilles, K. (2005). Quantitative architectural analysis: A new approach to cortical mapping. AnatEmbryol 210, 373-386.
204. Schubotz, R. I., Anwander, A., Knosche, T. R., von Cramon, D. Y., and Tittgemeyer, M. (2010). Anatomical and functional parcellation of the human lateral premotor cortex. Neuroimage 50, 396-408.
205. Sharma, J., Angelucci, A., and Sur, M. (2000). Induction of visual orientation modules in auditory cortex. Nature 404, 841-847.
206. Shehzad, Z., Kelly, A. M. C, Reiss, P., Gee, D. G, Gotimer, K., Uddin, L. Q., Lee, S. H., Margulies, D. S., Roy, A. K., Biswal, B. B., Petkova, E., Castellanos, F. X., and Milham, M. P. (2009). The resting brain: Unconstrained yet reliable. Cereb Cortex 19, 2209-2229.
207. Sims, K. S., and Williams, R. S. (1990). The human amygdaloid complex: A cytologie and histochemical atlas using nissl, myelin, acetylcholinesterase and nicotinamide adenine{ogonek} dinucleotide phosphate diaphorase staining. Neurosci 36, 449-472.
208. Skudlarski, P., Jagannathan, K., Calhoun, V. D., Hampson, M., Skudlarska, B. A., and Pearlson, G. (2008). Measuring brain connectivity: Diffusion tensor imaging validates resting state temporal correlations. Neuroimage 43, 554-561.
209. Solano-Castiella, E., Anwander, A., Lohmann, G., Weiss, M., Docherty, C, Geyer, S., Reimer, E., Friederici, A. D., and Turner, R. (2010). Diffusion tensor imaging segments the human amygdala in vivo. Neuroimage 49, 2958-2965.
210. Sporns, O. (2011). The human connectome: A complex network. Ann NYAcad Sci 1224, 109-125.
211. Sporns, O., Tononi, G., and Kotter, R. (2005). The human connectome: A structural description of the human brain. PLoS Comput Biol 1, e42.
212. Stam, C. J. (2010). Characterization of anatomical and functional connectivity in the brain: A complex networks perspective. Int J Psychophysio l11, 186-194.
213. Stejskal, E. O., and Tanner, J. E. (1965). Spin diffusion measurements: Spin echoes in the presence of a time dependent field gradient. JChem Phys 42, 288-292.
214. Sur, M., Garraghty, P. E., and Roe, A. W. (1988). Experimentally induced visual projections into auditory thalamus and cortex. Science 242, 1437-1441.
215. Toga, A. W., Thompson, P. M., Mori, S., Amunts, K., and Zilles, K. (2006). Towards multimodal atlases of the human brain. Nat Rev Neurosci 7, 952-966.
216. Tomassini, V., Jbabdi, S., Klein, J. C, Behrens, T. E. J., Pozzilli, C, Matthews, P. M., Rushworth, M. F. S., and Johansen-Berg, H. (2007). Diffusion-weighted imaging tractography-based parcellation of the human lateral premotor cortex identifies dorsal and ventral subregions with anatomical and functional specializations. J Neurosci 27, 10259-10269.
217. Tournier, J.-D., Yeh, C.-H., Calamante, F., Cho, K.-H., Connelly, A., and Lin, C.-P. (2008). Resolving crossing fibers using constrained spherical deconvolution: Validation using diffusion-weighted imaging phantom data. Neuroimage 42, 617-625.
218. Traynor, C, Heckemann, R. A., Hammers, A., O'Muircheartaigh, J., Crum, W. R., Barker, G. J., and Richardson, M. P. (2010). Reproducibility of thalamic segmentation based on probabilistic tractography. Neuroimage 52, 69-85.
219. Turken, A. U., and Dronkers, N. F. (2011). The neural architecture of the language comprehension network: Converging evidence from lesion and connectivity analyses. Front Syst Neurosci 5, 1.
220. Tyszka, J. M., Kennedy, D. P., Adolphs, R., and Paul, L. K. (2011). Intact bilateral resting-state networks in the absence of the corpus callosum. J Neurosci 31, 15154-15162.
221. Uddin, L.Q., Mooshagian, E., Zaidel, E., Scheres, A., Margulies, D. S., Kelly, A. M. C, Shehzad, Z., Adelstein, J. S., Castellanos, F. X., Biswal, B. B., and Milham, M. P. (2008). Residual functional connectivity in the split-brain revealed with resting-state functional MRI. Neuroreport 19, 703-709.
222. Van Buuren, M., Gladwin, T. E., Zandbelt, B. B., van den Heuvel, M., Ramsey, N. F., Kahn, R. S., and Vink, M. (2009). Cardiorespiratory effects on default-mode network activity as measured with fMRI. Hum Brain Mapp 30, 3031-3042.
223. van den Heuvel, M. P., and Hulshoff Pol, H. E. (2010). Exploring the brain network: A review on resting-state fMRI functional connectivity. Eur Neuropsychopharmacology, 20, 519-534.
224. Van Essen, D. C, and Maunsell, J. H. R. (1983). Hierarchical organization and functional streams in the visual cortex. Trends Neurosci 6, 370-375.
225. van Dijk, K. R. A., Hedden, T., Venkataraman, A., Evans, K. C, Lazar, S. W., and Buckner, R. L. (2010). Intrinsic functional connectivity as a tool for human connectomics: Theory, properties, and optimization. JNeurophysiol 103, 297-321.
226. Wallace, M. N., Johnston, P. W., and Palmer, A. R. (2002). Histochemical identification of cortical areas in the auditory region of the human brain. Exp Brain Res 143, 499-508.
227. Walters, N. B., Egan, G. F., Kril, J. J., Kean, M., Waley, P., Jenkinson, M., and Watson, J. D. G. (2003). In vivo identification of human cortical areas using high-resolution MRI: An approach to cerebral structure-function correlation. Proc Natl Acad Sci USA 100, 2981-2986.
228. Wedeen, V. J., Wang, R. P., Schmahmann, J. D., Benner, T., Tseng, W. Y. I., Dai, G., Pandya, D. N., Hagmann, P., D'Arceuil, H., and de Crespigny, A. J. (2008). Diffusion spectrum magnetic resonance imaging (DSI) tractography of crossing fibers. Neuroimage 41, 1267-1277.
229. Wise, R., Ide, K., Poulin, M. J., and Tracey, I. (2004). Resting fluctuations in arterial carbon dioxide induce significant low frequency variations in BOLD signal. Neuroimage 21, 1652-1664.
230. Yeo, B. T. T., Krienen, F. M., Sepulcre, J., Sabuncu, M. R., Lashkari, D., Hollinshead, M., Roffman, J. L., Smoller, J. W., Zollei, L., Polimeni, J. R., Fischl, B., Liu, H., and Buckner, R. L. (2011). The organization of the human cerebral cortex estimated by intrinsic functional connectivity. J Neurophysiol 106, 1125-1165.
231. Yu, C, Zhou, Y., Liu, Y., Jiang, T., Dong, H., Zhang, Y., and Walter, M. (2011). Functional segregation of the human cingulate cortex is confirmed by functional connectivity based neuroanatomical parcellation. Neuroimage 54, 2571-2581.
232. Zarahn, E., Aguirre, G. K., and D'Esposito, M. (1997). Empirical analyses of BOLD fMRI statistics. I. Spatially unsmoothed data collected under null-hypothesis conditions. Neuroimage 5, 179-197.
233. Zhang, D., Snyder, A. Z., Fox, M. D., Sansbury, M. W., Shimony, J. S., and Raichle, M. E. (2008). Intrinsic functional relations between human cerebral cortex and thalamus. J Neurophysiol 100, 1740-1748.
234. Zhang, D., Snyder, A. Z., Shimony, J. S., Fox, M. D., and Raichle, M. E. (2010). Noninvasive functional and structural connectivity mapping of the human thalamocortical system. Cereb Cortex 20, 1187-1194.
235. Zilles, K., and Amunts, K. (2010). Centenary of Brodmann's map - conception and fate. Nat Rev Neurosci 11, 139-145.
236. Zilles, K., and Palomero-Gallagher, N. (2001). Cyto-, myelo-, and receptor architectonics of the human parietal cortex. Neuroimage 14, S8-S20.
237. Zilles, K., Palomero-Gallagher, N., and Schleicher, A. (2004). Transmitter receptors and functional anatomy of the cerebral cortex. JAnat 205, 417-432.
238. Zilles, K., Palomero-Gallagher, N., Grefkes, C, Scheperjans, F., Boy, C, Amunts, K., and Schleicher, A. (2002a). Architectonics of the human cerebral cortex and transmitter receptor fingerprints: Reconciling functional neuroanatomy and neurochemistry. Eur Neuropsychopharmacology, 12, 587-599.
239. Zilles, K., Schlaug, G., Matelli, M., Luppino, G., Schleicher, A., Qu, M., Dabringhaus, A., Seitz, R., and Roland, P. E. (1995). Mapping of human and macaque sensorimotor areas by integrating architectonic, transmitter receptor, MRI and PET data. JAnat 187,515-537.
240. n Ed), eds. A. Toga and J. Mazziotta (San Diego: Academic Press), pp. 573-602.
241. Zuo, X. N., Di Martino, A., Kelly, C, Shehzad, Z. E., Gee, D. G, Klein, D. F., Castellanos, F. X., Biswal, B. B., & Milham, M. P. (2010). The oscillating brain: Complex and reliable. Neuroimage 49, 1432-1445.
242. Zuo, X. N., Kelly, C, Adelstein, J. S., Klein, D. F., Castellanos, F. X., & Milham, M. P. (2010). Reliable intrinsic connectivity networks: Test-retest evaluation using ICA and dual regression approach. Neuroimage 49, 2163-2177.