Comparison of bootstrap approaches for estimation of uncertainties of DTI parameters

NeuroImage

Volumn 33, Issue 2, 2006, Pages 531-541

  Chung, SungWon ^a,b   Lu, Ying ^a,b   Henry, Roland G ^a,b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Bootstrap; Diffusion tensor; Fiber tracking; Monte Carlo simulation; MRI

Indexed keywords

ARTICLE; MATHEMATICAL COMPUTING; MATHEMATICAL MODEL; MONTE CARLO METHOD; NEUROIMAGING; NUCLEAR MAGNETIC RESONANCE IMAGING; PRIORITY JOURNAL; REGRESSION ANALYSIS;

BRAIN; BRAIN MAPPING; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; MAGNETIC RESONANCE IMAGING; REPRODUCIBILITY OF RESULTS;

EID: 33749243100     PISSN: 10538119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.neuroimage.2006.07.001     Document Type: Article

References (30)

1. Alexander A.L., Hasan K.M., Lazar M., Tsuruda J.S., and Parker D.L. Analysis of partial volume effects in diffusion-tensor MRI. Magn. Reson. Med. 45 (2001) 770-780
2. Basser P.J., and Jones D.K. Diffusion-tensor MRI: theory, experimental design and data analysis-A technical review. NMR Biomed. 15 (2002) 456-467
3. Basser P.J., Mattiello J., and LeBihan D. Estimation of the effective self-diffusion tensor from the NMR spin echo. J. Magn. Reson., B 103 (1994) 247-254
4. Basser P.J., Mattiello J., and LeBihan D. MR diffusion tensor spectroscopy and imaging. Biophys. J. 66 (1994) 259-267
5. Behrens T.E., Woolrich M.W., Jenkinson M., Johansen-Berg H., Nunes R.G., Clare S., et al. Characterization and propagation of uncertainty in diffusion-weighted MR imaging. Magn. Reson. Med. 50 (2003) 1077-1088
6. Chang L.C., Jones D.K., and Pierpaoli C. RESTORE: robust estimation of tensors by outlier rejection. Magn. Reson. Med. 53 (2005) 1088-1095
7. Davidson, R., Flachaire, E., 2001. The Wild Bootstrap, Tamed at Last. Queen's University, Department of Economics, Working Papers.
8. Davison A.C., and Hinkley D.V. Bootstrap Methods and their Application (2003), Cambridge Univ. Press, Cambridge, UK
9. Efron B. 1977 Rietz lecture-Bootstrap methods-Another look at the jackknife. Ann. Stat. 7 (1979) 1-26
10. Efron B., and Tibshirani R. An Introduction to the Bootstrap (1993), Chapman and Hall, New York
11. Hasan K.M., Alexander A.L., and Narayana P.A. Does fractional anisotropy have better noise immunity characteristics than relative anisotropy in diffusion tensor MRI? An analytical approach. Magn. Reson. Med. 51 (2004) 413-417
12. Heim S., Hahn K., Samann P.G., Fahrmeir L., and Auer D.P. Assessing DTI data quality using bootstrap analysis. Magn. Reson. Med. 52 (2004) 582-589
13. Hesterberg T.C. Unbiasing the bootstrap-bootknife sampling vs. smoothing. section on statistics and the environment. Am. Stat. Assoc. (2004) 2924-2930
14. Jones D.K. Determining and visualizing uncertainty in estimates of fiber orientation from diffusion tensor MRI. Magn. Reson. Med. 49 (2003) 7-12
15. Jones D.K. The effect of gradient sampling schemes on measures derived from diffusion tensor MRI: a Monte Carlo study. Magn. Reson. Med. 51 (2004) 807-815
16. Jones D.K., and Basser P.J. "Squashing peanuts and smashing pumpkins": how noise distorts diffusion-weighted MR data. Magn. Reson. Med. 52 (2004) 979-993
17. Jones D.K., and Pierpaoli C. Confidence mapping in diffusion tensor magnetic resonance imaging tractography using a bootstrap approach. Magn. Reson. Med. 53 (2005) 1143-1149
18. Koay C.G., Carew J.D., Alexander A.L., Basser P.J., and Meyerand M.E. Investigation of anomalous estimates of tensor-derived quantities in diffusion tensor imaging. Magn. Reson. Med. 55 (2006) 930-936
19. Lazar M., and Alexander A.L. Bootstrap white matter tractography (BOOT-TRAC). NeuroImage 24 (2005) 524-532
20. Liu R.Y. Bootstrap procedures under some non-iid models. Ann. Stat. 16 (1988) 1696-1708
21. Mangin J.F., Poupon C., Clark C., Le Bihan D., and Bloch I. Distortion correction and robust tensor estimation for MR diffusion imaging. Med. Image Anal. 6 (2002) 191-198
22. O'Gorman R.L., and Jones D.K. How many bootstraps make a buckle?. 13th Annual Meeting of ISMRM (2005), ISMRM, Miami Beach 225
23. Pajevic S., and Basser P.J. Parametric and non-parametric statistical analysis of DT-MRI data. J. Magn. Reson. 161 (2003) 1-14
24. Pierpaoli C., and Basser P.J. Toward a quantitative assessment of diffusion anisotropy. Magn. Reson. Med. 36 (1996) 893-906
25. Rao J.N.K., and Wu C.F.J. Resampling inference with complex survey data. J. Am. Stat. Assoc. 83 (1988) 231-241
26. Schwartzman A., Dougherty R.F., and Taylor J.E. Cross-subject comparison of principal diffusion direction maps. Magn. Reson. Med. 53 (2005) 1423-1431
27. Shao J. Resampling methods in sample surveys. Statistics 27 (1996) 203-254
28. Shao J. Impact of the bootstrap on sample surveys. Stat. Sci. 18 (2003) 191-198
29. Tuch D.S. Q-ball imaging. Magn. Reson. Med. 52 (2004) 1358-1372
30. Whitcher B., Tuch D.S., and Wang L. The wild bootstrap to quantify variability in diffusion tensor MRI. 13th Annual Meeting of ISMRM (2005), ISMRM, Miami Beach 1333