Defining functional areas in individual human brains using resting functional connectivity MRI

NeuroImage

Volumn 41, Issue 1, 2008, Pages 45-57

  Cohen, Alexander L ^a   Fair, Damien A ^a   Dosenbach, Nico U F ^a   Miezin, Francis M ^a   Dierker, Donna ^a   Van Essen, David C ^a   Schlaggar, Bradley L ^a   Petersen, Steven E ^a  

^a WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; AUTOMATION; BRAIN CORTEX; BRAIN MAPPING; BRAIN REGION; FUNCTIONAL MAGNETIC RESONANCE IMAGING; IMAGE ANALYSIS; IMAGE PROCESSING; PRIORITY JOURNAL;

ALGORITHMS; BRAIN; BRAIN MAPPING; CEREBRAL CORTEX; DATA INTERPRETATION, STATISTICAL; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; MAGNETIC RESONANCE IMAGING; NEURAL PATHWAYS; OXYGEN; REPRODUCIBILITY OF RESULTS;

EID: 42649084678     PISSN: 10538119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.neuroimage.2008.01.066     Document Type: Article

References (74)

1. Achard S., Salvador R., Whitcher B., Suckling J., and Bullmore E. A resilient, low-frequency, small-world human brain functional network with highly connected association cortical hubs. J. Neurosci. 26 (2006) 63-72
2. Amunts K., Schleicher A., Burgel U., Mohlberg H., Uylings H.B., and Zilles K. Broca's region revisited: cytoarchitecture and intersubject variability. J. Comp. Neurol. 412 (1999) 319-341
3. Amunts K., Malikovic A., Mohlberg H., Schormann T., and Zilles K. Brodmann's areas 17 and 18 brought into stereotaxic space-where and how variable?. Neuroimage 11 (2000) 66-84
4. Andrews T.J., Halpern S.D., and Purves D. Correlated size variations in human visual cortex, lateral geniculate nucleus, and optic tract. J. Neurosci. 17 (1997) 2859-2868
5. Beckmann C.F., DeLuca M., Devlin J.T., and Smith S.M. Investigations into resting-state connectivity using independent component analysis. Philos. Trans. R. Soc. Lond., B Biol. Sci. 360 (2005) 1001-1013
6. Behrens T.E., Jenkinson M., Robson M.D., Smith S.M., and Johansen-Berg H. A consistent relationship between local white matter architecture and functional specialisation in medial frontal cortex. Neuroimage 30 (2006) 220-227
7. Biswal B., Yetkin F.Z., Haughton V.M., and Hyde J.S. Functional connectivity in the motor cortex of resting human brain using echo-planar MRI. Magn. Reson. Med. 34 (1995) 537-541
8. Bokde A.L., Lopez-Bayo P., Meindl T., Pechler S., Born C., Faltraco F., Teipel S.J., Moller H.J., and Hampel H. Functional connectivity of the fusiform gyrus during a face-matching task in subjects with mild cognitive impairment. Brain 129 (2006) 1113-1124
9. Brodmann K. Vergleichende lokalisationslehre der grosshirnrinde in ihren prinzipien dargestellt auf grund des zellenbaues (1909), J. A. Barth, Leipzig
10. Buckner R.L., Head D., Parker J., Fotenos A.F., Marcus D., Morris J.C., and Snyder A.Z. A unified approach for morphometric and functional data analysis in young, old, and demented adults using automated atlas-based head size normalization: reliability and validation against manual measurement of total intracranial volume. Neuroimage 23 (2004) 724-738
11. Buckner R.L., and Vincent J.L. Unrest at rest: default activity and spontaneous network correlations. Neuroimage 37 (2007) 1091-1096
12. Canny J. A computational approach to edge detection. IEEE. Trans. Pattern Anal. Mach. Intell. PAMI-8 (1986) 679-698
13. Carmichael S.T., and Price J.L. Architectonic subdivision of the orbital and medial prefrontal cortex in the macaque monkey. J. Comp. Neurol. 346 (1994) 366-402
14. Castellanos F.X., Margulies D.S., Kelly A.M.C., Uddin L.Q., Ghaffari M., Kirsch A., Shaw D., Shehzad Z., Di Martino A., Biswal B., Sonuga-Barke E.J.S., Rotrosen J., Adler L.A., and Milham M.P. Cingulate-precuneus interactions: a new locus of dysfunction in adult attention-deficit/hyperactivity disorder. Biol. Psychiatry 63 (2008) 332-337
15. Church J.A., Coalson R.S., Lugar H.M., Petersen S.E., and Schlaggar B.L. A Developmental fMRI study of reading and repetition reveals changes in phonological and visual mechanisms over age. Cereb. Cortex. (2008) (Electronic publication ahead of print)
16. Churchland P.S., and Sejnowski T.J. Perspectives on cognitive neuroscience. In: Lister, R.G., Weingartner, H.J. (Eds.), Perspectives on Cognitive Neuroscience (1991), Oxford University Press, Oxford
17. Clark S.A., Allard T., Jenkins W.M., and Merzenich M.M. Receptive fields in the body-surface map in adult cortex defined by temporally correlated inputs. Nature 332 (1988) 444-445
18. Cordes D., Haughton V., Carew J.D., Arfanakis K., and Maravilla K. Hierarchical clustering to measure connectivity in fMRI resting-state data. Magn. Reson. Imaging. 20 (2002) 305-317
19. Croxson P.L., Johansen-Berg H., Behrens T.E., Robson M.D., Pinsk M.A., Gross C.G., Richter W., Richter M.C., Kastner S., and Rushworth M.F. Quantitative investigation of connections of the prefrontal cortex in the human and macaque using probabilistic diffusion tractography. J. Neurosci. 25 (2005) 8854-8866
20. Damoiseaux J.S., Rombouts S.A., Barkhof F., Scheltens P., Stam C.J., Smith S.M., and Beckmann C.F. Consistent resting-state networks across healthy subjects. Proc. Natl. Acad. Sci. U. S. A. 103 (2006) 13848-13853
21. Dosenbach N.U., Visscher K.M., Palmer E.D., Miezin F.M., Wenger K.K., Kang H.C., Burgund E.D., Grimes A.L., Schlaggar B.L., and Petersen S.E. A core system for the implementation of task sets. Neuron 50 (2006) 799-812
22. Dosenbach N.U., Fair D.A., Miezin F.M., Cohen A.L., Wenger K.K., Dosenbach R.A.T., Fox M.D., Snyder A.Z., Vincent J.L., Raichle M.E., Schlaggar B.L., and Petersen S.E. Distinct brain networks for adaptive and stable task control in humans. Proc. Natl. Acad. Sci. U. S. A. 104 (2007) 11073-11078
23. Eisen M.B., Spellman P.T., Brown P.O., and Botstein D. Cluster analysis and display of genome-wide expression patterns. Proc. Natl. Acad. Sci. U. S. A. 95 (1998) 14863-14868
24. Fair D.A., Dosenbach N.U.F., Church J.A., Cohen A.L., Brahmbhatt S., Miezin F.M., Barch D.M., Raichle M.E., Petersen S.E., and Schlaggar B.L. Development of distinct control networks through segregation and integration. Proc. Natl. Acad. Sci. U. S. A. 104 (2007) 13507-13512
25. Fair D.A., Schlaggar B.L., Cohen A.L., Miezin F.M., Dosenbach N.U., Wenger K.K., Fox M.D., Snyder A.Z., Raichle M.E., and Petersen S.E. A method for using blocked and event-related fMRI data to study "resting state" functional connectivity. Neuroimage 35 (2007) 396-405
26. Felleman D.J., and Van Essen D.C. Distributed hierarchical processing in the primate cerebral cortex. Cereb. Cortex 1 (1991) 1-47
27. Fox M.D., Snyder A.Z., Vincent J.L., Corbetta M., Van Essen D.C., and Raichle M.E. The human brain is intrinsically organized into dynamic, anticorrelated functional networks. Proc. Natl. Acad. Sci. U. S. A. 102 (2005) 9673-9678
28. Fox M.D., Snyder A.Z., Zacks J.M., and Raichle M.E. Coherent spontaneous activity accounts for trial-to-trial variability in human evoked brain responses. Nat. Neurosci. 9 (2006) 23-25
29. Greicius M.D., Krasnow B., Reiss A.L., and Menon V. Functional connectivity in the resting brain: a network analysis of the default mode hypothesis. Proc. Natl. Acad. Sci. U. S. A. 100 (2003) 253-258
30. Greicius M.D., Srivastava G., Reiss A.L., and Menon V. Default-mode network activity distinguishes Alzheimer's disease from healthy aging: evidence from functional MRI. Proc. Natl. Acad. Sci. U. S. A. 101 (2004) 4637-4642
31. Greicius M.D., Flores B.H., Menon V., Glover G.H., Solvason H.B., Kenna H., Reiss A.L., and Schatzberg A.F. Resting-state functional connectivity in major depression: abnormally increased contributions from subgenual cingulate cortex and thalamus. Biol. Psychiatry 62 (2007) 429-437
32. Handl J., Knowles J., and Kell D.B. Computational cluster validation in post-genomic data analysis. Bioinformatics 21 (2005) 3201-3212
33. Johansen-Berg H., Behrens T.E., Robson M.D., Drobnjak I., Rushworth M.F., Brady J.M., Smith S.M., Higham D.J., and Matthews P.M. Changes in connectivity profiles define functionally distinct regions in human medial frontal cortex. Proc. Natl. Acad. Sci. U. S. A. 101 (2004) 13335-13340
34. Johansen-Berg H., Behrens T.E., Sillery E., Ciccarelli O., Thompson A.J., Smith S.M., and Matthews P.M. Functional-anatomical validation and individual variation of diffusion tractography-based segmentation of the human thalamus. Cereb. Cortex. 15 (2005) 31-39
35. Kerns J.G. Anterior cingulate and prefrontal cortex activity in an FMRI study of trial-to-trial adjustments on the Simon task. Neuroimage 33 (2006) 399-405
36. Klein J.C., Behrens T.E., Robson M.D., Mackay C.E., Higham D.J., and Johansen-Berg H. Connectivity-based parcellation of human cortex using diffusion MRI: establishing reproducibility, validity and observer independence in BA 44/45 and SMA/pre-SMA. Neuroimage 34 (2007) 204-211
37. Lancaster J.L., Glass T.G., Lankipalli B.R., Downs H., Mayberg H., and Fox P.T. A modality-independent approach to spatial normalization of tomographic images of the human brain. Hum. Brain Mapp. 3 (1995) 209-223
38. Langers D.R., Backes W.H., and van Dijk P. Representation of lateralization and tonotopy in primary versus secondary human auditory cortex. Neuroimage 34 (2007) 264-273
39. Leopold D.A., Murayama Y., and Logothetis N.K. Very slow activity fluctuations in monkey visual cortex: implications for functional brain imaging. Cereb. Cortex 13 (2003) 422-433
40. Levitt P. Structural and functional maturation of the developing primate brain. J. Pediatr. 143 (2003) S35-S45
41. Lim J.S. Two-Dimension Signal and Image Processing (1990), Prentice Hall, Englewood Cliffs, NJ
42. Lowe M.J., Mock B.J., and Sorenson J.A. Functional connectivity in single and multislice echoplanar imaging using resting-state fluctuations. Neuroimage 7 (1998) 119-132
43. Luks T.L., Simpson G.V., Dale C.L., and Hough M.G. Preparatory allocation of attention and adjustments in conflict processing. Neuroimage 35 (2007) 949-958
44. Lyttelton O., Boucher M., Robbins S., and Evans A. An unbiased iterative group registration template for cortical surface analysis. Neuroimage 34 (2007) 1535-1544
45. Margulies D.S., Kelly A.M., Uddin L.Q., Biswal B.B., Castellanos F.X., and Milham M.P. Mapping the functional connectivity of anterior cingulate cortex. Neuroimage 37 (2007) 579-588
46. Maunsell J.H.R., and Van Essen D.C. The connections of the middle temporal visual area (MT) and their relationship to a cortical hierarchy in the macaque monkey. J. Neurosci. 3 (1983) 2563-2586
47. Miezin F., Maccotta L., Ollinger J., Petersen S., and Buckner R. Characterizing the hemodynamic response: effects of presentation rate, sampling procedure, and the possibility of ordering brain activity based on relative timing. NeuroImage 11 (2000) 735-759
48. Nir Y., Hasson U., Levy I., Yeshurun Y., and Malach R. Widespread functional connectivity and fMRI fluctuations in human visual cortex in the absence of visual stimulation. Neuroimage 30 (2006) 1313-1324
49. Ojemann J.G., Akbudak E., Snyder A.Z., McKinstry R.C., Raichle M.E., and Conturo T.E. Anatomic localization and quantitative analysis of gradient refocused echo-planar fMRI susceptibility artifacts. NeuroImage 6 (1997) 156-167
50. Parker J.R. Algorithms for Image Processing and Computer Vision (1997), John Wiley & Sons, Inc., New York
51. Passingham R.E., Stephan K.E., and Kotter R. The anatomical basis of functional localization in the cortex. Nat. Rev. Neurosci. 3 (2002) 606-616
52. Posner M.I., Petersen S.E., Fox P.T., and Raichle M.E. Localization of cognitive operations in the human brain. Science 240 (1988) 1627-1631
53. Rombouts S., and Scheltens P. Functional connectivity in elderly controls and AD patients using resting state fMRI: a pilot study. Curr. Alzheimer Res. 2 (2005) 115-116
54. Rushworth M.F., Behrens T.E., and Johansen-Berg H. Connection patterns distinguish 3 regions of human parietal cortex. Cereb. Cortex 16 (2006) 1418-1430
55. Salvador R., Suckling J., Schwarzbauer C., and Bullmore E. Undirected graphs of frequency-dependent functional connectivity in whole brain networks. Philos. Trans. R. Soc. Lond., B. Biol. Sci. 360 (2005) 937-946
56. Scheperjans F., Hermann K., Eickhoff S.B., Amunts K., Schleicher A., and Zilles K. Observer-independent cytoarchitectonic mapping of the human superior parietal cortex. Cereb. Cortex. (2007) (Electronic publication ahead of print)
57. Snyder A.Z. Difference image vs. ratio image error function forms in PET-PET realignment. In: Myer R., Cunningham V.J., Bailey D.L., and Jones T. (Eds). Quantification of Brain Function Using PET (1996), Academic Press, San Diego, CA 131-137
58. Strick P.L. Anatomical organization of multiple motor areas in the frontal lobe: Implications for recovery of function. In: Waxman S.G. (Ed). Advances in Neurology (1988), Raven Press, New York 293-312
59. Swallow K.M., Braver T.S., Snyder A.Z., Speer N.K., and Zacks J.M. Reliability of functional localization using fMRI. Neuroimage 20 (2003) 1561-1577
60. Talairach J., and Tournoux P. Co-Planar Stereotaxic Atlas of the Human Brain (1988), Thieme Medical Publishers, Inc., New York
61. Tian L., Jiang T., Wang Y., Zang Y., He Y., Liang M., Sui M., Cao Q., Hu S., Peng M., and Zhuo Y. Altered resting-state functional connectivity patterns of anterior cingulate cortex in adolescents with attention deficit hyperactivity disorder. Neurosci. Lett. 400 (2006) 39-43
62. Uylings H.B., Rajkowska G., Sanz-Arigita E., Amunts K., and Zilles K. Consequences of large interindividual variability for human brain atlases: converging macroscopical imaging and microscopical neuroanatomy. Anat. Embryol. (Berl) 210 (2005) 423-431
63. Van Essen D.C. Functional organization of primate visual cortex. In: Peters A., and Jones E.G. (Eds). Cerebral Cortex (1985), Plenum Press, New York 259-329
64. Van Essen D.C. Origin of visual areas in macaque and human cerebral cortex. In: Chalupa L.M., and Werner J.S. (Eds). Visual Neuroscience (2004), MIT Press, Cambridge, MA 507-521
65. Van Essen D.C. Surface-based approaches to spatial localization and registration in primate cerebral cortex. Neuroimage 23 Suppl. 1 (2004) S97-S107
66. Van Essen D.C. A population-average, landmark- and surface-based (PALS) atlas of human cerebral cortex. Neuroimage 28 (2005) 635-662
67. Van Essen D.C., and Drury H.A. Structural and functional analyses of human cerebral cortex using a surface-based atlas. J. Neurosci. 17 (1997) 7079-7102
68. Van Essen D.C., and Dierker D. On navigating the human cerebral cortex: response to 'in praise of tedious anatomy'. Neuroimage 37 (2007) 1050-1054
69. Van Essen D.C., Newsome W.T., and Maunsell J.H. The visual field representation in striate cortex of the macaque monkey: asymmetries, anisotropies, and individual variability. Vision. Res. 24 (1984) 429-448
70. Van Essen D.C., Dickson J., Harwell J., Hanlon D., Anderson C.H., and Drury H.A. An integrated software suite for surface-based analyses of cerebral cortex. J. Am. Med. Inform. Assoc. 41 (2001) 1359-1378. http://brainmap.wustl.edu/caret See also http://brainmap.wustl.edu/caret
71. Vincent L., and Soille P. Watersheds in digital spaces: an efficient algorithm based on immersion simulations. IEEE. Trans. Pattern Anal. Mach. Intell. 13 (1991) 583-598
72. Vincent J.L., Patel G.H., Fox M.D., Snyder A.Z., Baker J.T., Van Essen D.C., Zempel J.M., Snyder L.H., Corbetta M., and Raichle M.E. Intrinsic functional architecture in the anesthetized monkey brain. Nature 447 (2007) 46-47
73. Whalley H.C., Simonotto E., Marshall I., Owens D.G., Goddard N.H., Johnstone E.C., and Lawrie S.M. Functional disconnectivity in subjects at high genetic risk of schizophrenia. Brain 128 (2005) 2097-2108
74. Zilles K., Schleicher A., Palomero-Gallagher N., and Amunts K. Quantitative analysis of cyto- and receptor architecture of the human brain. In: Mazziotta J.C., and Toga A. (Eds). Brain Mapping: The Methods (2002), Academic Press 573-602