Validation of in vitro probabilistic tractography

NeuroImage

Volumn 37, Issue 4, 2007, Pages 1267-1277

  Dyrby, Tim B ^a,b,f   Søgaard, Lise V ^a   Parker, Geoffrey J ^c   Alexander, Daniel C ^d   Lind, Nanna M ^e   Baaré, William F C ^a   Hay Schmidt, Anders ^e   Eriksen, Nina ^a   Pakkenberg, Bente ^a   Paulson, Olaf B ^a,f   Jelsing, Jacob ^a,g  

^a Mental Health Services CPH   (Denmark)

^b TECHNICAL UNIVERSITY OF DENMARK   (Denmark)

^c UNIVERSITY OF MANCHESTER   (United Kingdom)

^d UNIVERSITY COLLEGE LONDON   (United Kingdom)

^e UNIVERSITY OF COPENHAGEN   (Denmark)

^f Rigshospitalet   (Denmark)

^g Rigshospitalet ^*  (Denmark)

Author keywords

Brain; Diffusion weighted imaging; G ttingen minipig; Manganese; Multi fiber; Neuron tracing; Post mortem

Indexed keywords

DEXTRAN; MANGANESE;

ANIMAL EXPERIMENT; ARTICLE; AUTOPSY; BIOTINYLATION; BRAIN FUNCTION; DIFFUSION WEIGHTED IMAGING; HISTOCHEMISTRY; IMAGE DISPLAY; IN VITRO STUDY; IN VIVO STUDY; MALE; MICROSCOPIC ANATOMY; NEUROIMAGING; NONHUMAN; NUCLEAR MAGNETIC RESONANCE IMAGING; PRIORITY JOURNAL; SIGNAL NOISE RATIO; TRACTOGRAPHY; VALIDATION STUDY;

ALGORITHMS; ANIMALS; BIOTIN; BRAIN; CEREBRAL CORTEX; DEXTRANS; DIFFUSION MAGNETIC RESONANCE IMAGING; FLUORESCENT DYES; MALE; MANGANESE; MODELS, STATISTICAL; NERVE FIBERS; NEURAL PATHWAYS; REPRODUCIBILITY OF RESULTS; SWINE; SWINE, MINIATURE;

EID: 34548589087     PISSN: 10538119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.neuroimage.2007.06.022     Document Type: Article

References (43)

1. Alexander D.C. Multiple-fibre reconstruction algorithms for diffusion MRI. Ann. N. Y. Acad. Sci. 1064 (2005) 113-133
2. Alexander G.E., DeLong M.R., and Strick P.L. Parallel organization of functionally segregated circuits linking basal ganglia and cortex. Annu. Rev. Neurosci. 9 (1986) 357-381
3. Alexander G.E., Crutcher M.D., and DeLong M.R. Basal ganglia-thalamocortical circuits: parallel substrates for motor, oculomotor, "prefrontal" and "limbic" functions. Prog. Brain Res. 85 (1990) 119-146
4. Alexander D.C., Barker G.J., and Arridge S.R. Detection and modeling of non-Gaussian apparent diffusion coefficient profiles in human brain data. Magn. Reson. Med. 48 (2002) 331-340
5. Anbeek P., Vincken K.L., van Osch M.J., Bisschops R.H., and van der Grond J. Probabilistic segmentation of white matter lesions in MR imaging. NeuroImage 21 (2004) 1037-1044
6. Assaf Y., Freidlin R.Z., Rohde G.K., and Basser P.J. New modeling and experimental framework to characterize hindered and restricted water diffusion in brain white matter. Magn. Reson. Med. 52 (2004) 965-978
7. Basser P.J., Mattiello J., and LeBihan D. MR diffusion tensor spectroscopy and imaging. Biophys. J. 66 (1994) 259-267
8. Basser P.J., Pajevic S., Pierpaoli C., Duda J., and Aldroubi A. In vivo fibre tractography using DT-MRI data. Magn. Reson. Med. 44 (2000) 625-632
9. Behrens T.E., Woolrich M.W., Jenkinson M., Johansen-Berg H., Nunes R.G., Clare S., Matthews P.M., Brady J.M., and Smith S.M. Characterization and propagation of uncertainty in diffusion-weighted MR imaging. Magn. Reson. Med. 50 (2003) 1077-1088
10. Behrens T.E., Berg H.J., Jbabdi S., Rushworth M.F., and Woolrich M.W. Probabilistic diffusion tractography with multiple fibre orientations: what can we gain?. NeuroImage 34 (2007) 144-155
11. Ciccarelli O., Parker G.J., Toosy A.T., Wheeler-Kingshott C.A., Barker G.J., Boulby P.A., Miller D.H., and Thompson A.J. From diffusion tractography to quantitative white matter tract measures: a reproducibility study. NeuroImage 18 (2003) 348-359
12. Cook, P.A., 2006. Modelling uncertainty in brain fibre orientation from diffusion-weighted magnetic resonance imaging. Department of Computer Science, University College London. [Ph. D. thesis].
13. Frank L.R. Characterization of anisotropy in high angular resolution diffusion-weighted MRI. Magn. Reson. Med. 47 (2002) 1083-1099
14. Groenewegen H.J., Wright C.I., and Uylings H.B. The anatomical relationships of the prefrontal cortex with limbic structures and the basal ganglia. J. Psychopharmacol. 11 (1997) 99-106
15. Heiervang E., Behrens T.E., Mackay C.E., Robson M.D., and Johansen-Berg H. Between session reproducibility and between subject variability of diffusion MR and tractography measures. NeuroImage 33 (2006) 867-877
16. Jansons K.M., and Alexander D.C. Persistent angular structure: new insights from diffusion magnetic resonance imaging data. Inverse Problems 19 (2003) 1031-1046
17. Jelsing J., Hay-Schmidt A., Dyrby T., Hemmingsen R., Uylings H.B., and Pakkenberg B. The prefrontal cortex in the Gottingen minipig brain defined by neural projection criteria and cytoarchitecture. Brain Res. Bull. 70 (2006) 322-336
18. Jiang H., van Zijl P.C., Kim J., Pearlson G.D., and Mori S. DtiStudio: resource program for diffusion tensor computation and fibre bundle tracking. Comput. Methods Programs Biomed. 81 (2006) 106-116
19. Jones D.K., Travis A.R., Eden G., Pierpaoli C., and Basser P.J. PASTA: pointwise assessment of streamline tractography attributes. Magn. Reson. Med. 53 (2005) 1462-1467
20. Kobbert C., Apps R., Bechmann I., Lanciego J.L., Mey J., and Thanos S. Current concepts in neuroanatomical tracing. Prog. Neurobiol. 62 (2000) 327-351
21. Lazar M., and Alexander A.L. An error analysis of white matter tractography methods: synthetic diffusion tensor field simulations. NeuroImage 20 (2003) 1140-1153
22. Le Bihan D., Poupon C., Amadon A., and Lethimonnier F. Artifacts and pitfalls in diffusion MRI. J. Magn. Reson. Imaging 24 (2006) 478-488
23. Leemans A., Sijbers J., Verhoye M., and Van der Linden A. Mathematical framework for simulating diffusion tensor MR neural fibre bundles. Magn. Reson. Med. 53 (2005) 944-953
24. Leergaard T.B., Bjaalie J.G., Devor A., Wald L.L., and Dale A.M. In vivo tracing of major rat brain pathways using manganese-enhanced magnetic resonance imaging and three-dimensional digital atlasing. NeuroImage 20 (2003) 1591-1600
25. Lin C.P., Tseng W.Y., Cheng H.C., and Chen J.H. Validation of diffusion tensor magnetic resonance axonal fibre imaging with registered manganese-enhanced optic tracts. NeuroImage 14 (2001) 1035-1047
26. Lind N.M., Moustgaard A., Jelsing J., Vajta G., Cumming P., and Hansen A.K. The use of pigs in neuroscience: modeling brain disorders. Neurosci. Biobehav. Rev. 31 (2007) 728-751
27. Lori N.F., Akbudak E., Shimony J.S., Cull T.S., Snyder A.Z., Guillory R.K., and Conturo T.E. Diffusion tensor fibre tracking of human brain connectivity: acquisition methods, reliability analysis and biological results. NMR Biomed. 15 (2002) 494-515
28. Mori S., Crain B.J., Chacko V.P., and van Zijl P.C. Three-dimensional tracking of axonal projections in the brain by magnetic resonance imaging. Ann. Neurol. 45 (1999) 265-269
29. Murayama Y., Weber B., Saleem K.S., Augath M., and Logothetis N.K. Tracing neural circuits in vivo with Mn-enhanced MRI. Magn. Reson. Imaging 24 (2006) 349-358
30. Oztas E. Neuronal tracing. Neuroanatomy 2 (2003) 2-5
31. Parker G.J., and Alexander D.C. Probabilistic Monte Carlo based mapping of cerebral connections utilising whole-brain crossing fibre information. Lect. Notes Comput. Sci. 2732 (2003) 684-695
32. Parker G.J., and Alexander D.C. Probabilistic anatomical connectivity derived from the microscopic persistent angular structure of cerebral tissue. Philos. Trans. R. Soc. Lond., B Biol. Sci. 360 (2005) 893-902
33. Parker G.J., Wheeler-Kingshott C.A., and Barker G.J. Estimating distributed anatomical connectivity using fast marching methods and diffusion tensor imaging. IEEE Trans. Med. Imaging 21 (2002) 505-512
34. Parker G.J., Haroon H.A., and Wheeler-Kingshott C.A. A framework for a streamline-based probabilistic index of connectivity (PICo) using a structural interpretation of MRI diffusion measurements. J. Magn. Reson. Imaging 18 (2003) 242-254
35. Pautler R.G. In vivo, trans-synaptic tract-tracing utilizing manganese-enhanced magnetic resonance imaging (MEMRI). NMR Biomed. 17 (2004) 595-601
36. Pautler R.G., Silva A.C., and Koretsky A.P. In vivo neuronal tract tracing using manganese-enhanced magnetic resonance imaging. Magn. Reson. Med. 40 (1998) 740-748
37. Saleem K.S., Pauls J.M., Augath M., Trinath T., Prause B.A., Hashikawa T., and Logothetis N.K. Magnetic resonance imaging of neuronal connections in the macaque monkey. Neuron 34 (2002) 685-700
38. Selemon L.D., and Goldman-Rakic P.S. Longitudinal topography and interdigitation of corticostriatal projections in the rhesus monkey. J. Neurosci. 5 (1985) 776-794
39. Skare S., and Andersson J.L. On the effects of gating in diffusion imaging of the brain using single shot EPI. Magn. Reson. Imaging 19 (2001) 1125-1128
40. Tournier J.D., Calamante F., Gadian D.G., and Connelly A. Direct estimation of the fibre orientation density function from diffusion-weighted MRI data using spherical deconvolution. NeuroImage 23 (2004) 1176-1185
41. Tuch D.S. Q-ball imaging. Magn. Reson. Med. 52 (2004) 1358-1372
42. Tuch D.S., Reese T.G., Wiegell M.R., Makris N., Belliveau J.W., and Wedeen V.J. High angular resolution diffusion imaging reveals intravoxel white matter fibre heterogeneity. Magn. Reson. Med. 48 (2002) 577-582
43. Zaborszky L., Wouterlood F.G., and Lanciego J.L. Neuroanatomical Tract-Tracing 3: Molecules-Neurons-Systems (2006), Springer, New York