-
1
-
-
0035865397
-
Our genome unveiled
-
Baltimore D. Our genome unveiled. Nature. 2001;409:814-816.
-
(2001)
Nature
, vol.409
, pp. 814-816
-
-
Baltimore, D.1
-
2
-
-
79951481957
-
Initial impact of the sequencing of the human genome
-
Lander ES. Initial impact of the sequencing of the human genome. Nature. 2011;470:187-197.
-
(2011)
Nature
, vol.470
, pp. 187-197
-
-
Lander, E.S.1
-
3
-
-
77954407332
-
Genomewide association studies and assessment of the risk of disease
-
Feero WG, Guttmacher AE, Manolio TA. Genomewide association studies and assessment of the risk of disease. N Engl J Med. 2010;363: 166-176.
-
(2010)
N Engl J Med
, vol.363
, pp. 166-176
-
-
Feero, W.G.1
Guttmacher, A.E.2
Manolio, T.A.3
-
4
-
-
84856405512
-
The mystery of missing heritability: Genetic interactions create phantom heritability
-
Zuk O, Hechter E, Sunyaev SR, Lander ES. The mystery of missing heritability: Genetic interactions create phantom heritability. Proc Natl Acad Sci USA. 2012;109:1193-1198.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 1193-1198
-
-
Zuk, O.1
Hechter, E.2
Sunyaev, S.R.3
Lander, E.S.4
-
5
-
-
33745712893
-
Variability, compensation and homeostasis in neuron and network function
-
Marder E, Goaillard JM. Variability, compensation and homeostasis in neuron and network function. Nat Rev Neurosci. 2006;7: 563-574.
-
(2006)
Nat Rev Neurosci
, vol.7
, pp. 563-574
-
-
Marder, E.1
Goaillard, J.M.2
-
6
-
-
56749145936
-
Darwin 200: Beneath the surface
-
Chouard T. Darwin 200: beneath the surface. Nature. 2008;456: 300-303.
-
(2008)
Nature
, vol.456
, pp. 300-303
-
-
Chouard, T.1
-
7
-
-
1642580788
-
A meeting with Enrico Fermi
-
Dyson F. A meeting with Enrico Fermi. Nature. 2004;427:297.
-
(2004)
Nature
, vol.427
, pp. 297
-
-
Dyson, F.1
-
8
-
-
52149111149
-
Repolarization reserve: A moving target
-
Roden DM. Repolarization reserve: a moving target. Circulation. 2008; 118:981-982.
-
(2008)
Circulation
, vol.118
, pp. 981-982
-
-
Roden, D.M.1
-
9
-
-
78049436203
-
Regression analysis for constraining free parameters in electrophysiological models of cardiac cells
-
Sarkar AX, Sobie EA. Regression analysis for constraining free parameters in electrophysiological models of cardiac cells. PLoS Comput Biol. 2010;6:e1000914.
-
(2010)
PLoS Comput Biol
, vol.6
-
-
Sarkar, A.X.1
Sobie, E.A.2
-
11
-
-
0034721164
-
Error and attack tolerance of complex networks
-
Albert R, Jeong H, Barabasi AL. Error and attack tolerance of complex networks. Nature. 2000;406:378-382.
-
(2000)
Nature
, vol.406
, pp. 378-382
-
-
Albert, R.1
Jeong, H.2
Barabasi, A.L.3
-
12
-
-
0034609791
-
The large-scale organization of metabolic networks
-
Jeong H, Tombor B, Albert R, Oltvai ZN, Barabasi AL. The large-scale organization of metabolic networks. Nature. 2000;407:651-654.
-
(2000)
Nature
, vol.407
, pp. 651-654
-
-
Jeong, H.1
Tombor, B.2
Albert, R.3
Oltvai, Z.N.4
Barabasi, A.L.5
-
14
-
-
45149108420
-
Mapping the genetic architecture of gene expression in human liver
-
Schadt EE, Molony C, Chudin E, et al. Mapping the genetic architecture of gene expression in human liver. PLoS Biol. 2008;6:e107.
-
(2008)
PLoS Biol
, vol.6
-
-
Schadt, E.E.1
Molony, C.2
Chudin, E.3
-
15
-
-
67349154804
-
Advances in systems biology are enhancing our understanding of disease and moving us closer to novel disease treatments
-
Schadt EE, Zhang B, Zhu J. Advances in systems biology are enhancing our understanding of disease and moving us closer to novel disease treatments. Genetica. 2009;136:259-269.
-
(2009)
Genetica
, vol.136
, pp. 259-269
-
-
Schadt, E.E.1
Zhang, B.2
Zhu, J.3
-
16
-
-
45149106353
-
Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks
-
Zhu J, Zhang B, Smith EN, Drees B, Brem RB, Kruglyak L, Bumgarner RE, Schadt EE. Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks. Nat Genet. 2008;40: 854-861.
-
(2008)
Nat Genet
, vol.40
, pp. 854-861
-
-
Zhu, J.1
Zhang, B.2
Smith, E.N.3
Drees, B.4
Brem, R.B.5
Kruglyak, L.6
Bumgarner, R.E.7
Schadt, E.E.8
-
18
-
-
16844376909
-
Reverse engineering of regulatory networks in human b cells
-
Basso K, Margolin AA, Stolovitzky G, Klein U, Dalla-Favera R, Califano A. Reverse engineering of regulatory networks in human b cells. Nat Genet. 2005;37:382-390.
-
(2005)
Nat Genet
, vol.37
, pp. 382-390
-
-
Basso, K.1
Margolin, A.A.2
Stolovitzky, G.3
Klein, U.4
Dalla-Favera, R.5
Califano, A.6
-
19
-
-
33749037129
-
Identifying regulatory mechanisms using individual variation reveals key role for chromatin modification
-
Lee SI, Pe'er D, Dudley AM, Church GM, Koller D. Identifying regulatory mechanisms using individual variation reveals key role for chromatin modification. Proc Natl Acad Sci USA. 2006;103: 14062-14067.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 14062-14067
-
-
Lee, S.I.1
Pe'Er, D.2
Dudley, A.M.3
Church, G.M.4
Koller, D.5
-
20
-
-
80555139622
-
Genome-wide dissection of posttranscriptional and posttranslational interactions
-
Bansal M, Califano A. Genome-wide dissection of posttranscriptional and posttranslational interactions. Methods Mol Biol. 2012;786:131-149.
-
(2012)
Methods Mol Biol
, vol.786
, pp. 131-149
-
-
Bansal, M.1
Califano, A.2
-
21
-
-
23944458138
-
A general framework for weighted gene co-expression network analysis
-
Article17
-
Zhang B, Horvath S. A general framework for weighted gene co-expression network analysis. Stat Appl Genet Mol Biol. 2005;4: Article17.
-
(2005)
Stat Appl Genet Mol Biol
, vol.4
-
-
Zhang, B.1
Horvath, S.2
-
22
-
-
33748040439
-
Integrating genetic and network analysis to characterize genes related to mouse weight
-
Ghazalpour A, Doss S, Zhang B, Wang S, Plaisier C, Castellanos R, Brozell A, Schadt EE, Drake TA, Lusis AJ, Horvath S. Integrating genetic and network analysis to characterize genes related to mouse weight. PLoS Genet. 2006;2:1182-1192.
-
(2006)
PLoS Genet
, vol.2
, pp. 1182-1192
-
-
Ghazalpour, A.1
Doss, S.2
Zhang, B.3
Wang, S.4
Plaisier, C.5
Castellanos, R.6
Brozell, A.7
Schadt, E.E.8
Drake, T.A.9
Lusis, A.J.10
Horvath, S.11
-
23
-
-
60549111634
-
WGCNA: An R package for weighted correlation network analysis
-
Langfelder P, Horvath S. WGCNA: an R package for weighted correlation network analysis. BMC Bioinformatics. 2008;9:559.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 559
-
-
Langfelder, P.1
Horvath, S.2
-
24
-
-
50949084896
-
Geometric interpretation of gene coexpression network analysis
-
Horvath S, Dong J. Geometric interpretation of gene coexpression network analysis. PLoS Comput Biol. 2008;4:e1000117.
-
(2008)
PLoS Comput Biol
, vol.4
-
-
Horvath, S.1
Dong, J.2
-
25
-
-
0037199968
-
Hierarchical organization of modularity in metabolic networks
-
Ravasz E, Somera AL, Mongru DA, Oltvai ZN, Barabasi AL. Hierarchical organization of modularity in metabolic networks. Science. 2002; 297:1551-1555.
-
(2002)
Science
, vol.297
, pp. 1551-1555
-
-
Ravasz, E.1
Somera, A.L.2
Mongru, D.A.3
Oltvai, Z.N.4
Barabasi, A.L.5
-
26
-
-
40049099114
-
Defining clusters from a hierarchical cluster tree: The dynamic tree cut package for r
-
Langfelder P, Zhang B, Horvath S. Defining clusters from a hierarchical cluster tree: the dynamic tree cut package for r. Bioinformatics. 2008;24: 719-720.
-
(2008)
Bioinformatics
, vol.24
, pp. 719-720
-
-
Langfelder, P.1
Zhang, B.2
Horvath, S.3
-
27
-
-
54949113578
-
Functional organization of the transcriptome in human brain
-
Oldham MC, Konopka G, Iwamoto K, Langfelder P, Kato T, Horvath S, Geschwind DH. Functional organization of the transcriptome in human brain. Nat Neurosci. 2008;11:1271-1282.
-
(2008)
Nat Neurosci
, vol.11
, pp. 1271-1282
-
-
Oldham, M.C.1
Konopka, G.2
Iwamoto, K.3
Langfelder, P.4
Kato, T.5
Horvath, S.6
Geschwind, D.H.7
-
29
-
-
79959262465
-
Transcriptomic analysis of autistic brain reveals convergent molecular pathology
-
Voineagu I, Wang X, Johnston P, Lowe JK, Tian Y, Horvath S, Mill J, Cantor RM, Blencowe BJ, Geschwind DH. Transcriptomic analysis of autistic brain reveals convergent molecular pathology. Nature. 2011;474: 380-384.
-
(2011)
Nature
, vol.474
, pp. 380-384
-
-
Voineagu, I.1
Wang, X.2
Johnston, P.3
Lowe, J.K.4
Tian, Y.5
Horvath, S.6
Mill, J.7
Cantor, R.M.8
Blencowe, B.J.9
Geschwind, D.H.10
-
30
-
-
38949175007
-
A systems level analysis of transcriptional changes in Alzheimer's disease and normal aging
-
Miller JA, Oldham MC, Geschwind DH. A systems level analysis of transcriptional changes in Alzheimer's disease and normal aging. J Neurosci. 2008;28:1410-1420.
-
(2008)
J Neurosci
, vol.28
, pp. 1410-1420
-
-
Miller, J.A.1
Oldham, M.C.2
Geschwind, D.H.3
-
31
-
-
79952794409
-
Gene coexpression network topology of cardiac development, hypertrophy, and failure
-
Dewey FE, Perez MV, Wheeler MT, Watt C, Spin J, Langfelder P, Horvath S, Hannenhalli S, Cappola TP, Ashley EA. Gene coexpression network topology of cardiac development, hypertrophy, and failure. Circ Cardiovasc Genet. 2011;4:26-35.
-
(2011)
Circ Cardiovasc Genet
, vol.4
, pp. 26-35
-
-
Dewey, F.E.1
Perez, M.V.2
Wheeler, M.T.3
Watt, C.4
Spin, J.5
Langfelder, P.6
Horvath, S.7
Hannenhalli, S.8
Cappola, T.P.9
Ashley, E.A.10
-
32
-
-
40749105508
-
Variations in DNA elucidate molecular networks that cause disease
-
Chen Y, Zhu J, Lum PY, et al. Variations in DNA elucidate molecular networks that cause disease. Nature. 2008;452:429-435.
-
(2008)
Nature
, vol.452
, pp. 429-435
-
-
Chen, Y.1
Zhu, J.2
Lum, P.Y.3
-
33
-
-
41349095280
-
Genetics of gene expression and its effect on disease
-
Emilsson V, Thorleifsson G, Zhang B, et al. Genetics of gene expression and its effect on disease. Nature. 2008;452:423-428.
-
(2008)
Nature
, vol.452
, pp. 423-428
-
-
Emilsson, V.1
Thorleifsson, G.2
Zhang, B.3
-
34
-
-
70349656509
-
A systems genetics approach implicates usf1, fads3, and other causal candidate genes for familial combined hyperlipidemia
-
Plaisier CL, Horvath S, Huertas-Vazquez A, Cruz-Bautista I, Herrera MF, Tusie-Luna T, Aguilar-Salinas C, Pajukanta P. A systems genetics approach implicates usf1, fads3, and other causal candidate genes for familial combined hyperlipidemia. PLoS Genet. 2009;5:e1000642.
-
(2009)
PLoS Genet
, vol.5
-
-
Plaisier, C.L.1
Horvath, S.2
Huertas-Vazquez, A.3
Cruz-Bautista, I.4
Herrera, M.F.5
Tusie-Luna, T.6
Aguilar-Salinas, C.7
Pajukanta, P.8
-
35
-
-
80052174300
-
Network for activation of human endothelial cells by oxidized phospholipids: A critical role of heme oxygenase 1
-
Romanoski CE, Che N, Yin F, Mai N, Pouldar D, Civelek M, Pan C, Lee S, Vakili L, Yang WP, Kayne P, Mungrue IN, Araujo JA, Berliner JA, Lusis AJ. Network for activation of human endothelial cells by oxidized phospholipids: a critical role of heme oxygenase 1. Circ Res. 2011;109: e27-e41.
-
(2011)
Circ Res
, vol.109
-
-
Romanoski, C.E.1
Che, N.2
Yin, F.3
Mai, N.4
Pouldar, D.5
Civelek, M.6
Pan, C.7
Lee, S.8
Vakili, L.9
Yang, W.P.10
Kayne, P.11
Mungrue, I.N.12
Araujo, J.A.13
Berliner, J.A.14
Lusis, A.J.15
-
36
-
-
80053897262
-
Endonuclease G is a novel determinant of cardiac hypertrophy and mitochondrial function
-
McDermott-Roe C, Ye J, Ahmed R, et al. Endonuclease G is a novel determinant of cardiac hypertrophy and mitochondrial function. Nature. 2011;478:114-118.
-
(2011)
Nature
, vol.478
, pp. 114-118
-
-
McDermott-Roe, C.1
Ye, J.2
Ahmed, R.3
-
37
-
-
80052851950
-
Mouse genomic variation and its effect on phenotypes and gene regulation
-
Keane TM, Goodstadt L, Danecek P, et al. Mouse genomic variation and its effect on phenotypes and gene regulation. Nature. 2011;477:289-294.
-
(2011)
Nature
, vol.477
, pp. 289-294
-
-
Keane, T.M.1
Goodstadt, L.2
Danecek, P.3
-
38
-
-
75649122259
-
A high-resolution association mapping panel for the dissection of complex traits in mice
-
Bennett BJ, Farber CR, Orozco L, et al. A high-resolution association mapping panel for the dissection of complex traits in mice. Genome Res. 2010;20:281-290.
-
(2010)
Genome Res
, vol.20
, pp. 281-290
-
-
Bennett, B.J.1
Farber, C.R.2
Orozco, L.3
-
39
-
-
80051562374
-
Genetic analysis in the collaborative cross breeding population
-
Philip VM, Sokoloff G, Ackert-Bicknell CL, et al. Genetic analysis in the collaborative cross breeding population. Genome Res. 2011;21: 1223-1238.
-
(2011)
Genome Res
, vol.21
, pp. 1223-1238
-
-
Philip, V.M.1
Sokoloff, G.2
Ackert-Bicknell, C.L.3
-
40
-
-
45149105926
-
Efficient control of population structure in model organism association mapping
-
Kang HM, Zaitlen NA, Wade CM, Kirby A, Heckerman D, Daly MJ, Eskin E. Efficient control of population structure in model organism association mapping. Genetics. 2008;178:1709-1723.
-
(2008)
Genetics
, vol.178
, pp. 1709-1723
-
-
Kang, H.M.1
Zaitlen, N.A.2
Wade, C.M.3
Kirby, A.4
Heckerman, D.5
Daly, M.J.6
Eskin, E.7
-
41
-
-
79955638043
-
Mouse genome-wide association and systems genetics identify asxl2 as a regulator of bone mineral density and osteoclastogenesis
-
Farber CR, Bennett BJ, Orozco L, et al. Mouse genome-wide association and systems genetics identify asxl2 as a regulator of bone mineral density and osteoclastogenesis. PLoS Genet. 2011;7:e1002038.
-
(2011)
PLoS Genet
, vol.7
-
-
Farber, C.R.1
Bennett, B.J.2
Orozco, L.3
-
42
-
-
63449132586
-
Validation of candidate causal genes for obesity that affect shared metabolic pathways and networks
-
Yang X, Deignan JL, Qi H, et al. Validation of candidate causal genes for obesity that affect shared metabolic pathways and networks. Nat Genet. 2009;41:415-423.
-
(2009)
Nat Genet
, vol.41
, pp. 415-423
-
-
Yang, X.1
Deignan, J.L.2
Qi, H.3
-
43
-
-
1842841337
-
Regulation of ion channel expression
-
Rosati B, McKinnon D. Regulation of ion channel expression. Circ Res. 2004;94:874-883.
-
(2004)
Circ Res
, vol.94
, pp. 874-883
-
-
Rosati, B.1
McKinnon, D.2
-
44
-
-
35748977901
-
Universally sloppy parameter sensitivities in systems biology models
-
Gutenkunst RN, Waterfall JJ, Casey FP, Brown KS, Myers CR, Sethna JP. Universally sloppy parameter sensitivities in systems biology models. PLoS Comput Biol. 2007;3:1871-1878.
-
(2007)
PLoS Comput Biol
, vol.3
, pp. 1871-1878
-
-
Gutenkunst, R.N.1
Waterfall, J.J.2
Casey, F.P.3
Brown, K.S.4
Myers, C.R.5
Sethna, J.P.6
-
45
-
-
83755163018
-
Detecting novel associations in large data sets
-
Reshef DN, Reshef YA, Finucane HK, Grossman SR, McVean G, Turnbaugh PJ, Lander ES, Mitzenmacher M, Sabeti PC. Detecting novel associations in large data sets. Science. 2011;334:1518-1524.
-
(2011)
Science
, vol.334
, pp. 1518-1524
-
-
Reshef, D.N.1
Reshef, Y.A.2
Finucane, H.K.3
Grossman, S.R.4
McVean, G.5
Turnbaugh, P.J.6
Lander, E.S.7
Mitzenmacher, M.8
Sabeti, P.C.9
-
46
-
-
0034704229
-
A global geometric framework for nonlinear dimensionality reduction
-
Tenenbaum JB, Silva VD, Langford JC. A global geometric framework for nonlinear dimensionality reduction. Science. 2000;290: 2319-2323.
-
(2000)
Science
, vol.290
, pp. 2319-2323
-
-
Tenenbaum, J.B.1
Silva, V.D.2
Langford, J.C.3
-
47
-
-
77957915239
-
Expression quantitative trait loci: Replication, tissue-and sex-specificity in mice
-
van Nas A, Ingram-Drake L, Sinsheimer JS, Wang SS, Schadt EE, Drake T, Lusis AJ. Expression quantitative trait loci: replication, tissue-and sex-specificity in mice. Genetics. 2010;185:1059-1068.
-
(2010)
Genetics
, vol.185
, pp. 1059-1068
-
-
Van Nas, A.1
Ingram-Drake, L.2
Sinsheimer, J.S.3
Wang, S.S.4
Schadt, E.E.5
Drake, T.6
Lusis, A.J.7
-
48
-
-
41449085571
-
Eigengene networks for studying the relationships between co-expression modules
-
Langfelder P, Horvath S. Eigengene networks for studying the relationships between co-expression modules. BMC Syst Biol. 2007;1:54.
-
(2007)
BMC Syst Biol
, vol.1
, pp. 54
-
-
Langfelder, P.1
Horvath, S.2
-
50
-
-
0742305866
-
Network biology: Understanding the cell's functional organization
-
Barabasi AL, Oltvai ZN. Network biology: understanding the cell's functional organization. Nat Rev Genet. 2004;5:101-113.
-
(2004)
Nat Rev Genet
, vol.5
, pp. 101-113
-
-
Barabasi, A.L.1
Oltvai, Z.N.2
-
51
-
-
4143118861
-
Computer model of action potential of mouse ventricular myocytes
-
Bondarenko VE, Szigeti GP, Bett GCL, Kim S-J, Rasmusson RL. Computer model of action potential of mouse ventricular myocytes. Am J Physiol. 2004;287:H1378-H1403.
-
(2004)
Am J Physiol
, vol.287
-
-
Bondarenko, V.E.1
Szigeti, G.P.2
Gcl, B.3
Kim, S.-J.4
Rasmusson, R.L.5
-
52
-
-
38349013614
-
A rabbit ventricular action potential model replicating cardiac dynamics at rapid heart rates
-
Mahajan A, Shiferaw Y, Sato D, Baher A, Olcese R, Xie LH, Yang MJ, Chen PS, Restrepo JG, Karma A, Garfinkel A, Qu Z, Weiss JN. A rabbit ventricular action potential model replicating cardiac dynamics at rapid heart rates. Biophys J. 2008;94:392-410.
-
(2008)
Biophys J
, vol.94
, pp. 392-410
-
-
Mahajan, A.1
Shiferaw, Y.2
Sato, D.3
Baher, A.4
Olcese, R.5
Xie, L.H.6
Yang, M.J.7
Chen, P.S.8
Restrepo, J.G.9
Karma, A.10
Garfinkel, A.11
Qu, Z.12
Weiss, J.N.13
|