-
1
-
-
70349820140
-
Lin28 recruits the TUTase Zcchc11 to inhibit let-7 maturation in mouse embryonic stem cells
-
Hagan, J.P., Piskounova, E. & Gregory, R.I. Lin28 recruits the TUTase Zcchc11 to inhibit let-7 maturation in mouse embryonic stem cells. Nat. Struct. Mol. Biol. 16, 1021-1025 (2009).
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 1021-1025
-
-
Hagan, J.P.1
Piskounova, E.2
Gregory, R.I.3
-
2
-
-
68749102148
-
TUT4 in concert with Lin28 suppresses microRNA biogenesis through pre-microRNA uridylation
-
Heo, I. et al. TUT4 in concert with Lin28 suppresses microRNA biogenesis through pre-microRNA uridylation. Cell 138, 696-708 (2009).
-
(2009)
Cell
, vol.138
, pp. 696-708
-
-
Heo, I.1
-
3
-
-
69949154245
-
Zcchc11-dependent uridylation of microRNA directs cytokine expression
-
Jones, M.R. et al. Zcchc11-dependent uridylation of microRNA directs cytokine expression. Nat. Cell Biol. 11, 1157-1163 (2009).
-
(2009)
Nat. Cell Biol.
, vol.11
, pp. 1157-1163
-
-
Jones, M.R.1
-
4
-
-
70349810911
-
LIN-28 and the poly(U) polymerase PUP-2 regulate let-7 microRNA processing in Caenorhabditis elegans
-
Lehrbach, N.J. et al. LIN-28 and the poly(U) polymerase PUP-2 regulate let-7 microRNA processing in Caenorhabditis elegans. Nat. Struct. Mol. Biol. 16, 1016-1020 (2009).
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 1016-1020
-
-
Lehrbach, N.J.1
-
5
-
-
38149023239
-
Degradation of histone mRNA requires oligouridylation followed by decapping and simultaneous degradation of the mRNA both 5′ to 3′ and 3′ to 5′
-
Mullen, T.E. & Marzluff, W.F. Degradation of histone mRNA requires oligouridylation followed by decapping and simultaneous degradation of the mRNA both 5′ to 3′ and 3′ to 5′. Genes Dev. 22, 50-65 (2008).
-
(2008)
Genes Dev
, vol.22
, pp. 50-65
-
-
Mullen, T.E.1
Marzluff, W.F.2
-
6
-
-
78650446573
-
The human cytoplasmic RNA terminal U-transferase ZCCHC11 targets histone mRNAs for degradation
-
Schmidt, M.-J., West, S. & Norbury, C. The human cytoplasmic RNA terminal U-transferase ZCCHC11 targets histone mRNAs for degradation. RNA 17, 39-44 (2011).
-
(2011)
RNA
, vol.17
, pp. 39-44
-
-
Schmidt, M.-J.1
West, S.2
Norbury, C.3
-
7
-
-
19644400971
-
Uridine addition after microRNA-directed cleavage
-
Shen, B. & Goodman, H.M. Uridine addition after microRNA-directed cleavage. Science 306, 997 (2004).
-
(2004)
Science
, vol.306
, pp. 997
-
-
Shen, B.1
Goodman, H.M.2
-
8
-
-
34248225381
-
Effcient RNA polyuridylation by noncanonical poly(A) polymerases
-
Rissland, O.S., Mikulasova, A. & Norbury, C.J. Effcient RNA polyuridylation by noncanonical poly(A) polymerases. Mol. Cell. Biol. 27, 3612-3624 (2007).
-
(2007)
Mol. Cell. Biol.
, vol.27
, pp. 3612-3624
-
-
Rissland, O.S.1
Mikulasova, A.2
Norbury, C.J.3
-
9
-
-
66849122924
-
Decapping is preceded by 3′ uridylation in a novel pathway of bulk mRNA turnover
-
Rissland, O.S. & Norbury, C.J. Decapping is preceded by 3′ uridylation in a novel pathway of bulk mRNA turnover. Nat. Struct. Mol. Biol. 16, 616-623 (2009).
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 616-623
-
-
Rissland, O.S.1
Norbury, C.J.2
-
10
-
-
0034714329
-
Structure of yeast poly(A) polymerase alone and in complex with 3′-dATP
-
Bard, J. et al. Structure of yeast poly(A) polymerase alone and in complex with 3′-dATP. Science 289, 1346-1349 (2000).
-
(2000)
Science
, vol.289
, pp. 1346-1349
-
-
Bard, J.1
-
11
-
-
3843067711
-
Biochemical and structural insights into substrate binding and catalytic mechanism of mammalian poly(A) polymerase
-
Martin, G., Möglich, A., Keller, W. & Doublié, S. Biochemical and structural insights into substrate binding and catalytic mechanism of mammalian poly(A) polymerase. J. Mol. Biol. 341, 911-925 (2004).
-
(2004)
J. Mol. Biol.
, vol.341
, pp. 911-925
-
-
Martin, G.1
Möglich, A.2
Keller, W.3
Doublié, S.4
-
12
-
-
81855183636
-
Lin28A and Lin28B inhibit let-7 MicroRNA biogenesis by distinct mechanisms
-
Piskounova, E. et al. Lin28A and Lin28B inhibit let-7 MicroRNA biogenesis by distinct mechanisms. Cell 147, 1066-1079 (2011).
-
(2011)
Cell
, vol.147
, pp. 1066-1079
-
-
Piskounova, E.1
-
13
-
-
0028136070
-
Crystal structure of rat DNA polymerase β: Evidence for a common polymerase mechanism
-
Sawaya, M.R., Pelletier, H., Kumar, A., Wilson, S.H. & Kraut, J. Crystal structure of rat DNA polymerase β: evidence for a common polymerase mechanism. Science 264, 1930-1935 (1994).
-
(1994)
Science
, vol.264
, pp. 1930-1935
-
-
Sawaya, M.R.1
Pelletier, H.2
Kumar, A.3
Wilson, S.H.4
Kraut, J.5
-
14
-
-
33846634055
-
UTP-bound and Apo structures of a minimal RNA uridylyltransferase
-
Stagno, J., Aphasizheva, I., Rosengarth, A., Luecke, H. & Aphasizhev, R. UTP-bound and Apo structures of a minimal RNA uridylyltransferase. J. Mol. Biol. 366, 882-899 (2007).
-
(2007)
J. Mol. Biol.
, vol.366
, pp. 882-899
-
-
Stagno, J.1
Aphasizheva, I.2
Rosengarth, A.3
Luecke, H.4
Aphasizhev, R.5
-
15
-
-
1842859044
-
Atomic resolution structure of Moloney murine leukemia virus matrix protein and its relationship to other retroviral matrix proteins
-
Riffel, N. et al. Atomic resolution structure of Moloney murine leukemia virus matrix protein and its relationship to other retroviral matrix proteins. Structure 10, 1627-1636 (2002).
-
(2002)
Structure
, vol.10
, pp. 1627-1636
-
-
Riffel, N.1
-
16
-
-
0018792428
-
Crystal structure of cat muscle pyruvate kinase at a resolution of 2.6 A
-
Stuart, D.I., Levine, M., Muirhead, H. & Stammers, D.K. Crystal structure of cat muscle pyruvate kinase at a resolution of 2.6 A. J. Mol. Biol. 134, 109-142 (1979).
-
(1979)
J. Mol. Biol.
, vol.134
, pp. 109-142
-
-
Stuart, D.I.1
Levine, M.2
Muirhead, H.3
Stammers, D.K.4
-
17
-
-
35548937853
-
Dual role of the RNA substrate in selectivity and catalysis by terminal uridylyl transferases
-
Stagno, J., Aphasizheva, I., Aphasizhev, R. & Luecke, H. Dual role of the RNA substrate in selectivity and catalysis by terminal uridylyl transferases. Proc. Natl. Acad. Sci. USA 104, 14634-14639 (2007).
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 14634-14639
-
-
Stagno, J.1
Aphasizheva, I.2
Aphasizhev, R.3
Luecke, H.4
-
18
-
-
35548959608
-
RNA-specifc ribonucleotidyl transferases
-
Martin, G. & Keller, W. RNA-specifc ribonucleotidyl transferases. RNA 13, 1834-1849 (2007).
-
(2007)
RNA
, vol.13
, pp. 1834-1849
-
-
Martin, G.1
Keller, W.2
-
19
-
-
74549178560
-
MolProbity: All-atom structure validation for macromolecular crystallography
-
Chen, V.B. et al. MolProbity: all-atom structure validation for macromolecular crystallography. Acta Crystallogr. D Biol. Crystallogr. 66, 12-21 (2010).
-
(2010)
Acta Crystallogr. D Biol. Crystallogr.
, vol.66
, pp. 12-21
-
-
Chen, V.B.1
-
20
-
-
28644431836
-
Structural basis for UTP specifcity of RNA editing TUTases from Trypanosoma brucei
-
Deng, J., Ernst, N.L., Turley, S., Stuart, K.D. & Hol, W.G. Structural basis for UTP specifcity of RNA editing TUTases from Trypanosoma brucei. EMBO J. 24, 4007-4017 (2005).
-
(2005)
EMBO J
, vol.24
, pp. 4007-4017
-
-
Deng, J.1
Ernst, N.L.2
Turley, S.3
Stuart, K.D.4
Hol, W.G.5
-
21
-
-
77957014655
-
Structure and function of the polymerase core of TRAMP, a RNA surveillance complex
-
Hamill, S., Wolin, S.L. & Reinisch, K.M. Structure and function of the polymerase core of TRAMP, a RNA surveillance complex. Proc. Natl. Acad. Sci. USA 107, 15045-15050 (2010).
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 15045-15050
-
-
Hamill, S.1
Wolin, S.L.2
Reinisch, K.M.3
-
22
-
-
20444368818
-
RNA degradation by the exosome is promoted by a nuclear polyadenylation complex
-
LaCava, J. et al. RNA degradation by the exosome is promoted by a nuclear polyadenylation complex. Cell 121, 713-724 (2005).
-
(2005)
Cell
, vol.121
, pp. 713-724
-
-
Lacava, J.1
-
23
-
-
22744459614
-
A new yeast poly(A) polymerase complex involved in RNA quality control
-
Vanácová, S. et al. A new yeast poly(A) polymerase complex involved in RNA quality control. PLoS Biol. 3, e189 (2005).
-
(2005)
PLoS Biol.
, vol.3
-
-
Vanácová, S.1
-
24
-
-
0037125970
-
Cytoplasmic poly(A) polymerases mediate cellular responses to S phase arrest
-
Read, R.L., Martinho, R.G., Wang, S.W., Carr, A.M. & Norbury, C.J. Cytoplasmic poly(A) polymerases mediate cellular responses to S phase arrest. Proc. Natl. Acad. Sci. USA 99, 12079-12084 (2002).
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 12079-12084
-
-
Read, R.L.1
Martinho, R.G.2
Wang, S.W.3
Carr, A.M.4
Norbury, C.J.5
-
25
-
-
0033578927
-
Recognition of polyadenylate RNA by the poly(A)-binding protein
-
Deo, R.C., Bonanno, J.B., Sonenberg, N. & Burley, S.K. Recognition of polyadenylate RNA by the poly(A)-binding protein. Cell 98, 835-845 (1999).
-
(1999)
Cell
, vol.98
, pp. 835-845
-
-
Deo, R.C.1
Bonanno, J.B.2
Sonenberg, N.3
Burley, S.K.4
-
26
-
-
79251554375
-
Structural basis for dimerization and activity of human PAPD1, a noncanonical poly(A) polymerase
-
Bai, Y., Srivastava, S.K., Chang, J.H., Manley, J.L. & Tong, L. Structural basis for dimerization and activity of human PAPD1, a noncanonical poly(A) polymerase. Mol. Cell 41, 311-320 (2011).
-
(2011)
Mol. Cell
, vol.41
, pp. 311-320
-
-
Bai, Y.1
Srivastava, S.K.2
Chang, J.H.3
Manley, J.L.4
Tong, L.5
-
27
-
-
0032006209
-
Systematic analysis of domain motions in proteins from conformational change: New results on citrate synthase and T4 lysozyme
-
Hayward, S. & Berendsen, H.J. Systematic analysis of domain motions in proteins from conformational change: new results on citrate synthase and T4 lysozyme. Proteins 30, 144-154 (1998).
-
(1998)
Proteins
, vol.30
, pp. 144-154
-
-
Hayward, S.1
Berendsen, H.J.2
-
28
-
-
0027879008
-
Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants
-
Kabsch, W. Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants. J. Appl. Crystallogr. 26, 795-800 (1993).
-
(1993)
J. Appl. Crystallogr.
, vol.26
, pp. 795-800
-
-
Kabsch, W.1
-
30
-
-
75649151032
-
Xia2: An expert system for macromolecular crystallography data reduction
-
Winter, G. xia2: an expert system for macromolecular crystallography data reduction. J. Appl. Crystallogr. 43, 186-190 (2010).
-
(2010)
J. Appl. Crystallogr.
, vol.43
, pp. 186-190
-
-
Winter, G.1
-
31
-
-
71649092785
-
-
eds Read, R.J. & Sussman, J.L. Springer
-
Leslie, A.G.W. & Powell, H.R. in Evolving Methods for Macromolecular Crystallography, Nato Science Series II Vol. 245 (eds Read, R.J. & Sussman, J.L.) 41-51 (Springer, 2007).
-
(2007)
Evolving Methods for Macromolecular Crystallography, Nato Science Series II
, vol.245
, pp. 41-51
-
-
Leslie, A.G.W.1
Powell, H.R.2
-
32
-
-
34447508216
-
Phaser crystallographic software
-
McCoy, A.J. et al. Phaser crystallographic software. J. Appl. Crystallogr. 40, 658-674 (2007).
-
(2007)
J. Appl. Crystallogr.
, vol.40
, pp. 658-674
-
-
McCoy, A.J.1
-
33
-
-
43749083257
-
CHAINSAW: A program for mutating pdb fles used as templates in molecular replacement
-
Stein, N. CHAINSAW: a program for mutating pdb fles used as templates in molecular replacement. J. Appl. Crystallogr. 41, 641-643 (2008).
-
(2008)
J. Appl. Crystallogr.
, vol.41
, pp. 641-643
-
-
Stein, N.1
-
34
-
-
14844321328
-
Refnement of severely incomplete structures with maximum likelihood in BUSTER-TNT
-
Blanc, E. et al. Refnement of severely incomplete structures with maximum likelihood in BUSTER-TNT. Acta Crystallogr. D Biol. Crystallogr. 60, 2210-2221 (2004).
-
(2004)
Acta Crystallogr. D Biol. Crystallogr.
, vol.60
, pp. 2210-2221
-
-
Blanc, E.1
-
35
-
-
0030817618
-
Combining constraints for electron-density modifcation
-
Zhang, K.Y., Cowtan, K. & Main, P. Combining constraints for electron-density modifcation. Methods Enzymol. 277, 53-64 (1997).
-
(1997)
Methods Enzymol
, vol.277
, pp. 53-64
-
-
Zhang, K.Y.1
Cowtan, K.2
Main, P.3
-
36
-
-
33748337934
-
The Buccaneer software for automated model building. 1. Tracing protein chains
-
Cowtan, K. The Buccaneer software for automated model building. 1. Tracing protein chains. Acta Crystallogr. D Biol. Crystallogr. 62, 1002-1011 (2006).
-
(2006)
Acta Crystallogr. D Biol. Crystallogr.
, vol.62
, pp. 1002-1011
-
-
Cowtan, K.1
-
38
-
-
33646260450
-
Optimal description of a protein structure in terms of multiple groups undergoing TLS motion
-
Painter, J. & Merritt, E.A. Optimal description of a protein structure in terms of multiple groups undergoing TLS motion. Acta Crystallogr. D Biol. Crystallogr. 62, 439-450 (2006).
-
(2006)
Acta Crystallogr. D Biol. Crystallogr.
, vol.62
, pp. 439-450
-
-
Painter, J.1
Merritt, E.A.2
-
40
-
-
77954288774
-
Dali server: Conservation mapping in 3D
-
Holm, L. & Rosenstrom, P. Dali server: conservation mapping in 3D. Nucleic Acids Res. 38, W545-W549 (2010).
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Holm, L.1
Rosenstrom, P.2
-
41
-
-
4444221565
-
UCSF Chimera-A visualization system for exploratory research and analysis
-
Pettersen, E.F. et al. UCSF Chimera-a visualization system for exploratory research and analysis. J. Comput. Chem. 25, 1605-1612 (2004).
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
|