메뉴 건너뛰기




Volumn 22, Issue 8, 2012, Pages 1419-1425

Genome-wide genetic variations are highly correlated with proximal DNA methylation patterns

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL EXPERIMENT; ARTICLE; CPG ISLAND; DEAMINATION; DNA METHYLATION; GENETIC CONSERVATION; GENETIC VARIABILITY; GENOME; LIVER CELL; NONHUMAN; ORYZIAS; PRIORITY JOURNAL; SINGLE NUCLEOTIDE POLYMORPHISM; SOMATIC CELL;

EID: 84864634108     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.140236.112     Document Type: Article
Times cited : (39)

References (40)
  • 2
    • 0026502711 scopus 로고
    • Over-representation and underrepresentation of short oligonucleotides in DNA-sequences
    • Burge C, Campbell AM, Karlin S. 1992. Over-representation and underrepresentation of short oligonucleotides in DNA-sequences. Proc Natl Acad Sci 89: 1358-1362.
    • (1992) Proc Natl Acad Sci , vol.89 , pp. 1358-1362
    • Burge, C.1    Campbell, A.M.2    Karlin, S.3
  • 4
    • 79957577720 scopus 로고    scopus 로고
    • Primate CpG islands are maintained by heterogeneous evolutionary regimes involving minimal selection
    • Cohen NM, Kenigsberg E, Tanay A. 2011. Primate CpG islands are maintained by heterogeneous evolutionary regimes involving minimal selection. Cell 145: 773-786.
    • (2011) Cell , vol.145 , pp. 773-786
    • Cohen, N.M.1    Kenigsberg, E.2    Tanay, A.3
  • 6
    • 0024342297 scopus 로고
    • Cytosine methylation and the fate of CpG dinucleotides in vertebrate genomes
    • Cooper DN, Krawczak M. 1989. Cytosine methylation and the fate of CpG dinucleotides in vertebrate genomes. Hum Genet 83: 181-188.
    • (1989) Hum Genet , vol.83 , pp. 181-188
    • Cooper, D.N.1    Krawczak, M.2
  • 7
    • 0018185292 scopus 로고
    • Molecular basis of base substitution hotspots in Escherichia coli
    • Coulondre C, Miller JH, Farabaugh PJ, Gilbert W. 1978. Molecular basis of base substitution hotspots in Escherichia coli. Nature 274: 775-780.
    • (1978) Nature , vol.274 , pp. 775-780
    • Coulondre, C.1    Miller, J.H.2    Farabaugh, P.J.3    Gilbert, W.4
  • 9
    • 15744401773 scopus 로고    scopus 로고
    • Eukaryotic cytosine methyltransferases
    • Goll MG, Bestor TH. 2005. Eukaryotic cytosine methyltransferases. Annu Rev Biochem 74: 481-514.
    • (2005) Annu Rev Biochem , vol.74 , pp. 481-514
    • Goll, M.G.1    Bestor, T.H.2
  • 10
    • 34047142805 scopus 로고    scopus 로고
    • Heritable rather than age-related environmental and stochastic factors dominate variation in DNA methylation of the human IGF2/H19 locus
    • Heijmans BT, Kremer D, Tobi EW, Boomsma DI, Slagboom PE. 2007. Heritable rather than age-related environmental and stochastic factors dominate variation in DNA methylation of the human IGF2/H19 locus. Hum Mol Genet 16: 547-554.
    • (2007) Hum Mol Genet , vol.16 , pp. 547-554
    • Heijmans, B.T.1    Kremer, D.2    Tobi, E.W.3    Boomsma, D.I.4    Slagboom, P.E.5
  • 11
    • 77954189998 scopus 로고    scopus 로고
    • Extensive sequence-influenced DNA methylation polymorphism in the human genome
    • doi: 10.1186/1756-8935-3-11
    • Hellman A, Chess A. 2010. Extensive sequence-influenced DNA methylation polymorphism in the human genome. Epigenetics Chromatin 3: 11. doi: 10.1186/1756-8935-3-11.
    • (2010) Epigenetics Chromatin , vol.3 , pp. 11
    • Hellman, A.1    Chess, A.2
  • 12
    • 0032584234 scopus 로고    scopus 로고
    • Production of medakafish chimeras from a stable embryonic stem cell line
    • Hong Y, Winkler C, Schartl M. 1998. Production of medakafish chimeras from a stable embryonic stem cell line. Proc Natl Acad Sci 95: 3679-3684.
    • (1998) Proc Natl Acad Sci , vol.95 , pp. 3679-3684
    • Hong, Y.1    Winkler, C.2    Schartl, M.3
  • 13
    • 79959503826 scopus 로고    scopus 로고
    • The International HapMap Project
    • The International HapMap Consortium
    • The International HapMap Consortium. 2003. The International HapMap Project. Nature 426: 789-796.
    • (2003) Nature , vol.426 , pp. 789-796
  • 15
    • 46249117780 scopus 로고    scopus 로고
    • Genomic surveys by methylation-sensitive SNP analysis identify sequence-dependent allele-specific DNA methylation
    • Kerkel K, Spadola A, Yuan E, Kosek J, Jiang L, Hod E, Li K, Murty VV, Schupf N, Vilain E, et al. 2008. Genomic surveys by methylation-sensitive SNP analysis identify sequence-dependent allele-specific DNA methylation. Nat Genet 40: 904-908.
    • (2008) Nat Genet , vol.40 , pp. 904-908
    • Kerkel, K.1    Spadola, A.2    Yuan, E.3    Kosek, J.4    Jiang, L.5    Hod, E.6    Li, K.7    Murty, V.V.8    Schupf, N.9    Vilain, E.10
  • 18
    • 0015504248 scopus 로고
    • Rate of depurination of native deoxyribonucleic acid
    • Lindahl T, Nyberg B. 1972. Rate of depurination of native deoxyribonucleic acid. Biochemistry 11: 3610-3618.
    • (1972) Biochemistry , vol.11 , pp. 3610-3618
    • Lindahl, T.1    Nyberg, B.2
  • 21
    • 47649100711 scopus 로고    scopus 로고
    • DNA polymerases and human disease
    • Loeb LA, Monnat RJ Jr. 2008. DNA polymerases and human disease. Nat Rev Genet 9: 594-604.
    • (2008) Nat Rev Genet , vol.9 , pp. 594-604
    • Loeb, L.A.1    Monnat Jr., R.J.2
  • 22
    • 77957911410 scopus 로고    scopus 로고
    • Allele-specific methylation in the human genome: Implications for genetic studies of complex disease
    • Meaburn EL, Schalkwyk LC, Mill J. 2010. Allele-specific methylation in the human genome: Implications for genetic studies of complex disease. Epigenetics 5: 578-582.
    • (2010) Epigenetics , vol.5 , pp. 578-582
    • Meaburn, E.L.1    Schalkwyk, L.C.2    Mill, J.3
  • 23
    • 80052937538 scopus 로고    scopus 로고
    • Sperm methylation profiles reveal features of epigenetic inheritance and evolution in primates
    • Molaro A, Hodges E, Fang F, Song Q, McCombie WR, Hannon GJ, Smith AD. 2011. Sperm methylation profiles reveal features of epigenetic inheritance and evolution in primates. Cell 146: 1029-1041.
    • (2011) Cell , vol.146 , pp. 1029-1041
    • Molaro, A.1    Hodges, E.2    Fang, F.3    Song, Q.4    McCombie, W.R.5    Hannon, G.J.6    Smith, A.D.7
  • 25
    • 0024229852 scopus 로고
    • Universal rule for coding sequence construction: TA/CG deficiency-TG/CT excess
    • Ohno S. 1988. Universal rule for coding sequence construction: TA/CG deficiency-TG/CT excess. Proc Natl Acad Sci 85: 9630-9634.
    • (1988) Proc Natl Acad Sci , vol.85 , pp. 9630-9634
    • Ohno, S.1
  • 28
    • 31944432339 scopus 로고    scopus 로고
    • A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters
    • Saxonov S, Berg P, Brutlag DL. 2006. A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters. Proc Natl Acad Sci 103: 1412-1417.
    • (2006) Proc Natl Acad Sci , vol.103 , pp. 1412-1417
    • Saxonov, S.1    Berg, P.2    Brutlag, D.L.3
  • 30
    • 70350716441 scopus 로고    scopus 로고
    • Allele-specific DNA methylation in mouse strains is mainly determined by cis-acting sequences
    • Schilling E, El Chartouni C, Rehli M. 2009. Allele-specific DNA methylation in mouse strains is mainly determined by cis-acting sequences. Genome Res 19: 2028-2035.
    • (2009) Genome Res , vol.19 , pp. 2028-2035
    • Schilling, E.1    El Chartouni, C.2    Rehli, M.3
  • 32
    • 74549205222 scopus 로고    scopus 로고
    • Divergence time of the two regional medaka populations in Japan as a new time scale for comparative genomics of vertebrates
    • Setiamarga DH, Miya M, Yamanoue Y, Azuma Y, Inoue JG, Ishiguro NB, Mabuchi K, Nishida M. 2009. Divergence time of the two regional medaka populations in Japan as a new time scale for comparative genomics of vertebrates. Biol Lett 5: 812-816.
    • (2009) Biol Lett , vol.5 , pp. 812-816
    • Setiamarga, D.H.1    Miya, M.2    Yamanoue, Y.3    Azuma, Y.4    Inoue, J.G.5    Ishiguro, N.B.6    Mabuchi, K.7    Nishida, M.8
  • 33
    • 77954238686 scopus 로고    scopus 로고
    • Allele-specific methylation is prevalent and is contributed by CpG-SNPs in the human genome
    • Shoemaker R, Deng J,WangW, Zhang K. 2010. Allele-specific methylation is prevalent and is contributed by CpG-SNPs in the human genome. Genome Res 20: 883-889.
    • (2010) Genome Res , vol.20 , pp. 883-889
    • Shoemaker, R.1    Deng, J.2    Wang, W.3    Zhang, K.4
  • 34
    • 0025299347 scopus 로고
    • The expected equilibrium of the CpG dinucleotide in vertebrate genomes under a mutation model
    • Sved J, Bird A. 1990. The expected equilibrium of the CpG dinucleotide in vertebrate genomes under a mutation model. Proc Natl Acad Sci 87: 4692-4696.
    • (1990) Proc Natl Acad Sci , vol.87 , pp. 4692-4696
    • Sved, J.1    Bird, A.2
  • 37
    • 34047116826 scopus 로고    scopus 로고
    • Distribution, silencing potential and evolutionary impact of promoter DNAmethylation in the human genome
    • Weber M, Hellmann I, StadlerMB, Ramos L, Paabo S, RebhanM, SchubelerD. 2007. Distribution, silencing potential and evolutionary impact of promoter DNAmethylation in the human genome. Nat Genet 39: 457-466.
    • (2007) Nat Genet , vol.39 , pp. 457-466
    • Weber, M.1    Hellmann, I.2    Stadler, M.B.3    Ramos, L.4    Paabo, S.5    Rebhan, M.6    Schubeler, D.7
  • 39
    • 0344875199 scopus 로고    scopus 로고
    • Human thymine DNA glycosylase (TDG) and methyl-CpG-binding protein 4 (MBD4) excise thymine glycol (Tg) from a Tg:G mispair
    • Yoon JH, Iwai S, O'Connor TR, Pfeifer GP. 2003. Human thymine DNA glycosylase (TDG) and methyl-CpG-binding protein 4 (MBD4) excise thymine glycol (Tg) from a Tg:G mispair. Nucleic Acids Res 31: 5399-5404.
    • (2003) Nucleic Acids Res , vol.31 , pp. 5399-5404
    • Yoon, J.H.1    Iwai, S.2    O'Connor, T.R.3    Pfeifer, G.P.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.