-
1
-
-
0037162885
-
Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes
-
DOI 10.1126/science.1072104
-
Aparicio, S. et al. 2002 Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes. Science 297, 1301-1310. (doi:10.1126/science. 1072104). (Pubitemid 34913162)
-
(2002)
Science
, vol.297
, Issue.5585
, pp. 1301-1310
-
-
Aparicio, S.1
Chapman, J.2
Stupka, E.3
Putnam, N.4
Chia, J.-M.5
Dehal, P.6
Christoffels, A.7
Rash, S.8
Hoon, S.9
Smit, A.10
Sollewijn Gelpke, M.D.11
Roach, J.12
Oh, T.13
Ho, I.Y.14
Wong, M.15
Detter, C.16
Verhoef, F.17
Predki, P.18
Tay, A.19
Lucas, S.20
Richardson, P.21
Smith, S.F.22
Clark, M.S.23
Edwards, Y.J.K.24
Doggett, N.25
Zharkikh, A.26
Tavtigian, S.V.27
Pruss, D.28
Barnstead, M.29
Evans, C.30
Baden, H.31
Powell, J.32
Glusman, G.33
Rowen, L.34
Hood, L.35
Tan, Y.H.36
Elgar, G.37
Hawkins, T.38
Venkatesh, B.39
Rokhsar, D.40
Brenner, S.41
more..
-
2
-
-
49249122999
-
Mitogenomic evaluation of the historical biogeography of cichlids toward reliable dating of teleostean divergences
-
doi:10.1186/1471-2148-8-215
-
Azuma, Y., Kumazawa, Y., Miya, M., Mabuchi, K. & Nishida, M. 2008 Mitogenomic evaluation of the historical biogeography of cichlids toward reliable dating of teleostean divergences. BMC Evol. Biol. 8, 215. (doi:10. 1186/1471-2148-8-215).
-
(2008)
BMC Evol. Biol.
, vol.8
, pp. 215
-
-
Azuma, Y.1
Kumazawa, Y.2
Miya, M.3
Mabuchi, K.4
Nishida, M.5
-
3
-
-
0037176026
-
Phylogenetic relationships of four species of floating gobies (Gymnogobius) as inferred from partial mitochondrial cytochrome b gene sequences
-
doi:10.1007/s102280200048
-
Harada, S., Jeon, S.-R., Kinoshita, I., Tanaka, M. & Nishida, M. 2002 Phylogenetic relationships of four species of floating gobies (Gymnogobius) as inferred from partial mitochondrial cytochrome b gene sequences. Ichthyol. Res. 49, 324-332. (doi:10.1007/s102280200048).
-
(2002)
Ichthyol. Res.
, vol.49
, pp. 324-332
-
-
Harada, S.1
Jeon, S.-R.2
Kinoshita, I.3
Tanaka, M.4
Nishida, M.5
-
4
-
-
0034020820
-
Medaka fish as a model system for vertebrate developmental genetics
-
doi:10.1002/(SICI)1521-1878(200005)22: 5,487::AID-BIES11.3.0.CO;2-8
-
Ishikawa, Y. 2000 Medaka fish as a model system for vertebrate developmental genetics. BioEssays 22, 487-495. (doi:10.1002/(SICI)1521- 1878(200005)22: 5, 487::AID-BIES11.3.0.CO;2-8).
-
(2000)
BioEssays
, vol.22
, pp. 487-495
-
-
Ishikawa, Y.1
-
5
-
-
7244259101
-
Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype
-
DOI 10.1038/nature03025
-
Jaillon, O. et al. 2004 Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate protokaryotype. Nature 431, 946-957. (doi:10.1038/nature03025). (Pubitemid 39434410)
-
(2004)
Nature
, vol.431
, Issue.7011
, pp. 946-957
-
-
Jatllon, O.1
Aury, J.-M.2
Brunet, F.3
Petit, J.-L.4
Stange-Thomann, N.5
Maucell, E.6
Bouneau, L.7
Fischer, C.8
Ozouf-Costaz, C.9
Bernot, A.10
Nicaud, S.11
Jaffe, D.12
Fisher, S.13
Lutfalla, G.14
Dossat, C.15
Segurens, B.16
Dasilva, C.17
Salanoubat, M.18
Levy, M.19
Houdet, N.20
Castellano, S.21
Anthouard, V.22
Jubin, C.23
Castelli, V.24
Katinka, M.25
Vacherie, B.26
Blemont, C.27
Skalli, Z.28
Cattolico, L.29
Poulain, J.30
De Berardinis, V.31
Cruaud, C.32
Dupart, S.33
Brottler, P.34
Coutanceau, J.-P.35
Gouzy, J.36
Parra, G.37
Lardier, G.38
Chapple, C.39
McKernan, K.J.40
McEwan, P.41
Bosak, S.42
Kellis, M.43
Volff, J.-N.44
Gulgo, R.45
Zody, M.C.46
Mesirov, J.47
Lindblad-Toh, K.48
Birren, B.49
Nusbaum, C.50
Kahn, D.51
Robinson-Rechavi, M.52
Laudet, V.53
Schachter, V.54
Quetler, F.55
Saurin, W.56
Scarpeill, C.57
Wincker, P.58
Lander, E.S.59
Weissenbach, J.60
Roest Crollius, H.61
more..
-
6
-
-
34249994907
-
The medaka draft genome and insights into vertebrate genome evolution
-
DOI 10.1038/nature05846, PII NATURE05846
-
Kasahara, M. et al. 2007 The medaka draft genome and insights into vertebrate genome evolution. Nature 447, 714-719. (doi:10.1038/nature05846). (Pubitemid 46889726)
-
(2007)
Nature
, vol.447
, Issue.7145
, pp. 714-719
-
-
Kasahara, M.1
Naruse, K.2
Sasaki, S.3
Nakatani, Y.4
Qu, W.5
Ahsan, B.6
Yamada, T.7
Nagayasu, Y.8
Doi, K.9
Kasai, Y.10
Jindo, T.11
Kobayashi, D.12
Shimada, A.13
Toyoda, A.14
Kuroki, Y.15
Fujiyama, A.16
Sasaki, T.17
Shimizu, A.18
Asakawa, S.19
Shimizu, N.20
Hashimoto, S.-I.21
Yang, J.22
Lee, Y.23
Matsushima, K.24
Sugano, S.25
Sakaizumi, M.26
Narita, T.27
Ohishi, K.28
Haga, S.29
Ohta, F.30
Nomoto, H.31
Nogata, K.32
Morishita, T.33
Endo, T.34
Shin-I, T.35
Takeda, H.36
Morishita, S.37
Kohara, Y.38
more..
-
7
-
-
45949107473
-
Recent developments in the MAFFT multiple sequence alignment program
-
DOI 10.1093/bib/bbn013, Special Issue: Critical Technologies for Bioinformatics
-
Katoh, K. & Toh, H. 2008 Recent developments in the MAFFT multiple sequence alignment program. Brief. Bioinformatics 9, 286-298. (doi:10.1093/bib/bbn013). (Pubitemid 351890825)
-
(2008)
Briefings in Bioinformatics
, vol.9
, Issue.4
, pp. 286-298
-
-
Katoh, K.1
Toh, H.2
-
8
-
-
0033191527
-
Organization of the mitochondrial genome of a deep-sea fish Gonostoma gracile (Teleostei: Stomiiformes): First example of transfer RNA gene rearrangements in bony fishes
-
doi:10.1007/PL00011798
-
Miya, M. & Nishida, M. 1999 Organization of the mitochondrial genome of a deep-sea fish Gonostoma gracile (Teleostei: Stomiiformes): first example of transfer RNA gene rearrangements in bony fishes. Mar. Biotechnol. 1, 416-426. (doi:10.1007/PL00011798).
-
(1999)
Mar. Biotechnol.
, vol.1
, pp. 416-426
-
-
Miya, M.1
Nishida, M.2
-
9
-
-
3042616012
-
Medaka genomics: A bridge between mutant phenotype and gene function
-
DOI 10.1016/j.mod.2004.04.014, PII S0925477304000954
-
Naruse, K., Hori, H., Shimizu, N., Kohara, Y. & Takeda, H. 2004 Medaka genomics: a bridge between mutant phenotype and gene function. Mech. Dev. 121, 619-628. (doi:10.1016/j.mod.2004.04.014). (Pubitemid 38813122)
-
(2004)
Mechanisms of Development
, vol.121
, Issue.7-8
, pp. 619-628
-
-
Naruse, K.1
Hori, H.2
Shimizu, N.3
Kohara, Y.4
Takeda, H.5
-
10
-
-
0003728605
-
-
4th edn. Hoboken, NJ: John Wiley & Sons
-
Nelson, J. S. 2006 Fishes of the world, 4th edn. Hoboken, NJ: John Wiley & Sons.
-
(2006)
Fishes of the World
-
-
Nelson, J.S.1
-
11
-
-
0028254846
-
Neogene paleogeography and marine climate of the Japanese Islands based on shallow-marine molluscs
-
doi:10.1016/0031-0182(94) 90241-0
-
Ogasawara, K. 1993 Neogene paleogeography and marine climate of the Japanese Islands based on shallow-marine molluscs. Palaeogeogr. Palaeoclimatol. Palaeoecol. 108, 335-351. (doi:10.1016/0031-0182(94) 90241-0).
-
(1993)
Palaeogeogr. Palaeoclimatol. Palaeoecol.
, vol.108
, pp. 335-351
-
-
Ogasawara, K.1
-
12
-
-
55349095826
-
A phylogenetic analysis and taxonomic revision of ricefishes, Oryzias and relatives (Beloniformes: Adrianichthyidae)
-
Parenti, L. R. 2008 A phylogenetic analysis and taxonomic revision of ricefishes, Oryzias and relatives (Beloniformes: Adrianichthyidae). Zool. J. Linn. Soc. 154, 494-610.
-
(2008)
Zool. J. Linn. Soc.
, vol.154
, pp. 494-610
-
-
Parenti, L.R.1
-
13
-
-
55049098903
-
Interrelationships of Atherinomorpha (medakas, flyingfishes, killifishes, silversides, and their relatives): The first evidence based on whole mitogenome sequences
-
doi:10.1016/j.ympev. 2008.08.008
-
Setiamarga, D. H. E., Miya, M., Yamanoue, Y., Mabuchi, K., Satoh, T. P., Inoue, J. G. & Nishida, M. 2008 Interrelationships of Atherinomorpha (medakas, flyingfishes, killifishes, silversides, and their relatives): the first evidence based on whole mitogenome sequences. Mol. Phylogenet. Evol. 49, 598-605. (doi:10.1016/j.ympev. 2008.08.008).
-
(2008)
Mol. Phylogenet. Evol.
, vol.49
, pp. 598-605
-
-
Setiamarga, D.H.E.1
Miya, M.2
Yamanoue, Y.3
Mabuchi, K.4
Satoh, T.P.5
Inoue, J.G.6
Nishida, M.7
-
14
-
-
33750403801
-
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
DOI 10.1093/bioinformatics/btl446
-
Stamatakis, A. 2006 RAXML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22, 2688-2690. (doi:10.1093/bioinformatics/btl446). (Pubitemid 44642609)
-
(2006)
Bioinformatics
, vol.22
, Issue.21
, pp. 2688-2690
-
-
Stamatakis, A.1
-
15
-
-
44249107123
-
Draft genome of the medaka fish: A comprehensive resource for medaka developmental genetics and vertebrate evolutionary biology
-
doi:10.1111/j.1440-169X.2008. 00992.x
-
Takeda, H. 2008 Draft genome of the medaka fish: a comprehensive resource for medaka developmental genetics and vertebrate evolutionary biology. Dev. Growth Differ. 50, S157-S166. (doi:10.1111/j.1440-169X.2008. 00992.x).
-
(2008)
Dev. Growth Differ.
, vol.50
-
-
Takeda, H.1
-
16
-
-
0346343420
-
Geographic Variation and Diversity of the Cytochrome b Gene in Japanese Wild Populations of Medaka, Oryzias latipes
-
DOI 10.2108/zsj.20.1279
-
Takehana, Y., Naga, N., Matsuda, M., Tsuchiya, K. & Sakaizumi, M. 2003 Geographic variation and diversity of the cytochrome b gene in Japanese wild populations of medaka Oryzias latipes. Zool. Sci. 20, 1279-1291. (doi:10.2108/zsj.20.1279). (Pubitemid 37519171)
-
(2003)
Zoological Science
, vol.20
, Issue.10
, pp. 1279-1291
-
-
Takehana, Y.1
Nagai, N.2
Matsuda, M.3
Tsuchiya, K.4
Sakaizumi, M.5
-
17
-
-
20444395855
-
Molecular phylogeny of the medaka fishes genus Oryzias (Beloniformes: Adrianichthyidae) based on nuclear and mitochondrial DNA sequences
-
DOI 10.1016/j.ympev.2005.01.016, PII S1055790305000345
-
Takehana, M., Naruse, K. & Sakaizumi, M. 2005 Molecular phylogeny of the medaka fishes genus Oryzias (Beloniformes: Adrianichthyidae) based on nuclear and mitochondrial DNA sequences. Mol. Phylogenet. Evol. 36, 417-428. (doi:10.1016/j.ympev.2005.01.016). (Pubitemid 40793704)
-
(2005)
Molecular Phylogenetics and Evolution
, vol.36
, Issue.2
, pp. 417-428
-
-
Takehana, Y.1
Naruse, K.2
Sakaizumi, M.3
-
18
-
-
0036803223
-
Divergence time and evolutionary rate estimation with multilocus data
-
DOI 10.1080/10635150290102456
-
Thorne, J. L. & Kishino, H. 2002 Divergence time and evolutionary rate estimation with multilocus data. Syst. Biol. 51, 689-702. (doi:10.1080/10635150290102456). (Pubitemid 35294802)
-
(2002)
Systematic Biology
, vol.51
, Issue.5
, pp. 689-702
-
-
Thorne, J.L.1
Kishino, H.2
-
19
-
-
33749049997
-
Biogeographical history of Japanese freshwater fishes: Phylogeographic approaches and perspectives
-
Watanabe, K. et al. 2006 Biogeographical history of Japanese freshwater fishes: phylogeographic approaches and perspectives. Jpn J. Ichthyol. 53, 1-38.
-
(2006)
Jpn J. Ichthyol.
, vol.53
, pp. 1-38
-
-
Watanabe, K.1
-
20
-
-
0036245348
-
Medaka - A model organism from the Far East
-
DOI 10.1038/nrg704
-
Wittbrodt, J., Shima, A. & Schartl, M. 2002 Medaka: a model organism from the Far East. Nat. Genet. 3, 53-64. (doi:10.1038/nrg704). (Pubitemid 34506604)
-
(2002)
Nature Reviews Genetics
, vol.3
, Issue.1
, pp. 53-64
-
-
Wittbrodt, J.1
Shima, A.2
Schartl, M.3
|