Vibronic effects in the spectroscopy and dynamics of C-phycocyanin

Journal of Physics B: Atomic, Molecular and Optical Physics

Volumn 45, Issue 15, 2012, Pages

  Womick, Jordan M ^a   West, Brantley A ^a   Scherer, Norbert F ^b   Moran, Andrew M ^a  

^a The University of North Carolina at Chapel Hill   (United States)

^b UNIVERSITY OF CHICAGO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALLOPHYCOCYANIN; ANISOTROPY MEASUREMENTS; C-PHYCOCYANIN; CONDON APPROXIMATION; COULOMBIC INTERACTIONS; ELECTRONIC RELAXATION; ELECTRONIC STRUCTURE CALCULATIONS; ENERGY TUNING; INTERMOLECULAR COUPLING; LIGHT HARVESTING PROTEINS; NON-CONDON EFFECT; OUT-OF-PLANE; PHOTON-ECHO SPECTROSCOPY; PHOTOSYNTHETIC LIGHT; POLARIZATION CONDITIONS; TRANSIENT ABSORPTION; VIBRATIONAL MODES; VIBRATIONAL RESONANCE; VIBRONIC COUPLING; VIBRONIC EFFECT; VIBRONIC EXCITONS; VIBRONIC RELAXATION; WAVE-PACKET MOTION;

DYNAMICS; ELECTRONIC STRUCTURE; EXCITONS; LASER SPECTROSCOPY; QUANTUM CHEMISTRY;

ANISOTROPY;

EID: 84864459627     PISSN: 09534075     EISSN: 13616455     Source Type: Journal    
DOI: 10.1088/0953-4075/45/15/154016     Document Type: Article

References (74)

1. Calhoun T R, Ginsberg N S, Schlau-Cohen G S, Cheng Y C, Ballottari M, Bassi R and Fleming G R 2009 J. Phys. Chem. B 113 16291-5
2. Collini E, Wong C Y, Wilk K E, Curmi P M G, Brumer P and Scholes G D 2010 Nature 463 644-7
3. Womick J M, Miller S A and Moran A M 2009 J. Phys. Chem. A 113 6587-98
4. Panitchayangkoon G, Hayes D, Fransted K A, Caram J R, Harel E, Wen J, Blankenship R E and Engel G S 2010 Proc. Natl Acad. Sci. 107 12766-70
5. Engel G S, Calhoun T R, Read E L, Ahn T K, Mancal T, Cheng Y C, Blankenship R E and Fleming G R 2007 Nature 446 782-6 (Pubitemid 46582029)
6. Myers J A, Lewis K L M, Fuller F D, Tekavec P F, Yocum C F and Ogilvie J P 2010 J. Phys. Chem. Lett. 1 2774-80
7. Zhu J, Gdor I, Smolensky E, Friedman N, Sheves M and Ruhman S 2010 J. Phys. Chem. B 114 3038-45
8. Sperling J, Nemeth A, Hauer J, Abramavicius D, Mukamel S, Kauffmann H F and Milota F 2010 J. Phys. Chem. A 114 8179-89
9. Feng X, Neupane B, Acharya K, Zazubovich V, Picorel R, Seibert M and Jankowiak R 2011 J. Phys. Chem. B 115 13339-49
10. Abramavicius D, Nemeth A, Milota F, Sperling J, Mukamel S and Kauffmann H F 2012 Phys. Rev. Lett. 108 067401
11. Bixner O et al 2012 J. Chem. Phys. 136 204503
12. Jonas D M 2003 Annu. Rev. Phys. Chem. 54 425-63
13. Cowan M L, Ogilvie J P and Miller R J D 2004 Chem. Phys. Lett. 386 184-9
14. Tian P, Keusters D, Suzaki Y and Warren W S 2003 Science 300 1553-5 (Pubitemid 36682882)
15. Turner D B, Stone K W, Gundogdu K and Nelson K A 2011 Rev. Sci. Instrum. 82 081301
16. Turner D B, Wilk K E, Curmi P M G and Scholes G D 2011 J. Phys. Chem. Lett. 2 1904-11
17. Lott G A, Perdomo-Ortiz A, Utterback J K, Widom J R, Aspuru-Guzik A and Marcus A H 2011 Proc. Natl Acad. Sci. 108 16521-6
18. Hennebicq E, Beljonne D, Curutchet C, Scholes G D and Silbey R J 2009 J. Chem. Phys. 130 214505
19. Nazir A 2009 Phys. Rev. Lett. 103 146404
20. Fassioli F, Nazir A and Olaya-Castro A 2010 J. Phys. Chem. Lett. 1 2139-43
21. Chin A W, Datta A, Caruso F, Huelga S F and Plenio M B 2010 New J. Phys. 12 065002
22. Yuen-Zhou J, Krich J J, Mohseni M and Aspuru-Guzik A 2011 Proc. Natl Acad. Sci 108 17615-20
23. Sarovar M, Ishizaki A, Fleming G R and Whaley K B 2010 Nature Phys. 6 462-7
24. Abramavicius D, Palmieri B, Voronine D V, Sanda F and Mukamel S 2009 Chem. Rev. 109 2350-408
25. Ishizaki A and Fleming G R 2009 Proc. Natl Acad. Sci. 106 17255-60
26. Olbrich C, Strümpfer J, Schulten K and Kleinekathoefer U 2011 J. Phys. Chem. B 115 758-64
27. Plenio M B and Huelga S F 2008 New J. Phys. 10 113019
28. Arnett D C, Moser C C, Dutton P L and Scherer N F 1999 J. Phys. Chem. B 103 2014-32
29. Jonas D M, Lang M J, Nagasawa Y, Joo T and Fleming G R 1996 J. Phys. Chem 100 12660-73
30. Womick J M and Moran A M 2011 J. Phys. Chem. B 115 1347-56
31. Womick J M and Moran A M 2009 J. Phys. Chem. B 113 15747-59
32. Zhang J M et al 2001 J. Phys. Chem. A 105 8878-91 (Pubitemid 35378314)
33. Philpott M R 1967 J. Chem. Phys. 47 4437-45
34. Spano F C 2010 Acc. Chem. Res. 43 429-39
35. Lim S-H, Bjorklund T G, Spano F C and Bardeen C J 2004 Phys. Rev. Lett. 92 1-4
36. Roden J, Schulz G, Eisfeld A and Briggs J 2009 J. Chem. Phys. 131 044909
37. Sanematu T 1977 J. Phys. Soc. Japan 43 600-4
38. Debreczeny M P, Sauer K, Zhou J and Bryant D A 1995 J. Phys. Chem. 99 8412-9
39. Debreczeny M P, Sauer K, Zhou J and Bryant D A 1995 J. Phys. Chem. 99 8420-31
40. Riter R R, Edington M D and Beck W F 1996 J. Phys. Chem. 100 14198-205
41. Riter R E, Edington M D and Beck W F 1997 J. Phys. Chem. B 101 2366-71
42. Homoelle B J, Edington M D, Diffey W M and Beck W F 1998 J. Phys. Chem. B 102 3044-52
43. Womick J M and Moran A M 2009 J. Phys. Chem. B 113 15771-82
44. Zhang J M, Zhao F L, Zheng X G, Wang H Z, Yang T-S, Hayashi M and Lin S H 1999 J. Photochem. Photobiol. B 53 128-35 (Pubitemid 30047596)
45. Gillbro T, Sharkov A V, Kryukov I V, Khoroshilov E V, Kryukov P G, Fischer R and Scheer H 1993 Biochim. Biophys. Acta 1140 321-6 (Pubitemid 23015698)
46. Womick J M, Miller S A and Moran A M 2009 J. Phys. Chem. B 113 6630-9
47. Lee H, Cheng Y-C and Fleming G R 2007 Science 316 1462-5 (Pubitemid 46906609)
48. Womick J M, Miller S A and Moran A M 2010 J. Chem. Phys. 133 024507
49. Qian W and Jonas D M 2003 J. Chem. Phys. 119 1611
50. Farrow D A, Smith E R, Qian W and Jonas D M 2008 J. Chem. Phys. 129 1-20
51. Farrow D A, Qian W, Smith E R, Ferro A A and Jonas D M 2008 J. Chem. Phys. 128 144510 (Pubitemid 351551817)
52. Smith E R and Jonas D M 2011 J. Phys. Chem. A 115 4101-13
53. Lepetit L, Chériaux G and Joffre M 1995 J. Opt. Soc. Am. B 12 2467-74
54. Gallagher S M, Albrecht A W, Hybl J D, Landin B L, Rajaram B and Jonas D M 1998 J. Opt. Soc. Am. B 15 2338-45
55. Brixner T, Mancal T, Stiopkin I V and Fleming G R 2004 J. Chem. Phys. 121 4221-36
56. Cheng Y C and Fleming G R 2008 J. Phys. Chem. B 112 4254-60 (Pubitemid 351704620)
57. Palings I, van den Berg E M M, Lugtenburg J and Mathies R A 1989 Biochemistry 28 1498-507 (Pubitemid 19072017)
58. Andel F III, Murphy J T, Haas J A, McDowell M T, van der Hoef I, Lugtenburg J, Lagarias J C and Mathies R A 2000 Biochemistry 39 2667-76 (Pubitemid 30148920)
59. Fodor S P, Lagarias J C and Mathies R A 1990 Biochemistry 29 11141-6
60. Abramavicius D and Mukamel S 2004 Chem. Rev. 104 2073-98
61. Mukamel S 1995 Principles of Nonlinear Optical Spectroscopy (New York: Oxford University Press)
62. Moran A M and Mukamel S 2004 Proc. Natl Acad. Sci. 101 506-10 (Pubitemid 38084666)
63. McHale J 1999 Molecular Spectroscopy (Upper Saddle Creek River, NJ: Prentice-Hall)
64. Frisch M J et al 2009 Gaussian 09, Revision C.01
65. Dwyer J J, Gittis A G, Karp D A, Lattman E E, Spencer D S, Stites W E and Garcia-Moreno B 2000 Biophys. J. 79 1610-20
66. Ren Y, Wan J, Xu X, Zhang Z and Yang G 2006 J. Phys. Chem. B 110 18665-9 (Pubitemid 44547377)
67. Albrecht A C 1961 J. Chem. Phys. 34 1476-84
68. Waterland M R, Stockwell D and Kelley A M 2001 J. Chem. Phys. 114 6249-58 (Pubitemid 32419604)
69. Doust A B, Marai C N J, Harrop S J, Wilk K E, Curmi P M G and Scholes G D 2004 J. Mol. Biol. 344 135-53 (Pubitemid 39422379)
70. Doust A B, Wilk K E, Curmi P M G and Scholes G D 2006 J. Photochem. Photobiol. A 184 1-17
71. Doust A B, van Stokkum I H M, Larsen D S, Wilk K E, Curmi P M G, van Grondelle R and Scholes G D 2005 J. Phys. Chem. B 109 14219-26 (Pubitemid 41163132)
72. Book L D, Arnett D C, Hu H and Scherer N F 1998 J. Phys. Chem. A 102 4350-9
73. Wang X-Q, Li L-N, Chang W-R, Zhang J-P, Gui L-L, Guo B-J and Liang D-C 2001 Acta Crystallogr. D 57 784-92 (Pubitemid 32554619)
74. Edington M D, Riter R E and Beck W F 1996 J. Phys. Chem. 100 14206-17