Probing the photoreaction mechanism of phytochrome through analysis of resonance Raman vibrational spectra of recombinant analogues

Biochemistry

Volumn 39, Issue 10, 2000, Pages 2667-2676

  Andel III, Frank ^a,d   Murphy, John T ^b,e   Haas, Jeff A ^b,f   McDowell, Michael T ^b   Van Der Hoef, Ineke ^c   Lugtenburg, Johan ^c   Lagarias, J Clark ^b   Mathies, Richard A ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c LEIDEN UNIVERSITY   (Netherlands)

^d LAWRENCE BERKELEY NATIONAL LABORATORY   (United States)

^e SCRIPPS RESEARCH INSTITUTE   (United States)

^f UNIVERSITY OF WISCONSIN MADISON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

PHYTOCHROME; RECOMBINANT PROTEIN;

ARTICLE; CALCULATION; CHEMICAL STRUCTURE; MOLECULAR DYNAMICS; MOLECULAR INTERACTION; NONHUMAN; OAT; PHOTOCHEMISTRY; PHOTOREACTIVITY; PRIORITY JOURNAL; RAMAN SPECTROMETRY;

AVENA SATIVA; BILIVERDINE; DEUTERIUM; ETHYLENES; HYDROGEN; LIGHT; PHOTOCHEMISTRY; PHYCOBILINS; PHYCOCYANIN; PHYTOCHROME; PLANT GROWTH REGULATORS; PYRROLES; RECOMBINANT PROTEINS; SPECTRUM ANALYSIS, RAMAN; TETRAPYRROLES;

EID: 0034646178     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi991688z     Document Type: Article

References (60)

1. Kendrick, R. E., and Kronenberg, G. H. M. (1994) Photomorphogenesis in Plants, Martinus Nijhoff, Dordrecht.
2. Pratt, L. H. (1995) Photochem. Photobiol. 61, 10-21.
3. Vierstra, R. D., and Quail, P. H. (1986) in Photomorphogenesis in Plants (Kendrick, R. E., and Kronenberg, G. H. M., Eds.) pp 35-60, Martinus Nijhoff, Dordrecht.
4. Lagarias, J. C., and Rapoport, H. (1980) J. Am. Chem. Soc. 102, 4821-4828.
5. Bowler, C., Frohnmeyer, H., Schafer, E., Neuhaus, G., and Chua, N. (1997) Acta Physiol. Plant. 19, 475-483.
6. Elich, T., and Chory, J. (1997) Cell 91, 713-716.
7. Quail, P. (1997) Bioessays 19, 571-579.
8. Fodor, S. P. A., Lagarias, J. C., and Mathies, R. A. (1988) Photochem. Photobiol. 48, 129-136.
9. Fodor, S. P. A., Lagarias, J. C., and Mathies, R. A. (1990) Biochemistry 29, 11141-11146.
10. Andel, F., III, Lagarias, J. C., and Mathies, R. A. (1996) Biochemistry 35, 15997-16008.
11. Hildebrandt, P., Hoffmann, A., Lindemann, P., Heibel, G., Braslavsky, S. E., Schaffner, K., and Schrader, B. (1992) Biochemistry 31, 7957-7962.
12. Farrens, D. L., Holt, R. E., Rospendowski, B. N., Song, P.-S., and Cotton, T. M. (1989) J. Am. Chem. Soc. 111, 9162-9169.
13. Holt, R. E., Farrens, D. L., Song, P.-S., and Cotton, T. M. (1989) J. Am. Chem. Soc. 111, 9156-9162.
14. Mizutani, Y., Tokutomi, S., Aoyagi, K., Horitsu, K., and Kitagawa, T. (1991) Biochemistry 30, 10693-10700.
15. Mizutani, Y., Tokutomi, S., and Kitagawa, T. (1994) Biochemistry 33, 153-158.
16. Tokutomi, S., Mizutani, Y., Anni, H., and Kilagawa, T. (1990) FEBS Lett. 269, 341-344.
17. Kneip, C., Mozley, D., Hildebrandt, P., Gartner, W., Braslavsky, S. E., and Schaffner, K. (1997) FEBS Lett. 414, 23-26.
18. Knipp, B., Kneip, K., Matysik, J., Gartner, W., Hildebrandt, P., Braslavsky, S. E., and Schaffner, K. (1997) Chem. Eur. J. 3, 363-367.
19. Margulies, L., and Stockburger, M. (1979) J. Am. Chem. Soc. 101, 743-744.
20. Matysik, J., Hildebrandt, P., Smit, K., Mark, F., Gartner, W., Braslavsky, S. E., Schaffner, K., and Schrader, B. (1997) J. Pharm. Biomed. Anal 15, 1319-1324.
21. Siebert, F., Grimm, R., Rudiger, W., Schmidt, G., and Scheer, H. (1990) Eur. J. Biochem. 194, 921-928.
22. Lin, S. W., Groesbeek, M., van der Hoef, I., Verdegem, P., Lugtenburg, J., and Mathies, R. A. (1998) J. Phys. Chem. B 102, 2787-2806.
23. Palings, I., van den Berg, E. M. M., Lugtenburg, J., and Mathies, R. A. (1989) Biochemistry 28, 1498-1507.
24. Li, L., Murphy, J. T., and Lagarias, J. C. (1995) Biochemistry 34, 7923-7930.
25. Andel, F., III (1998) Ph.D. Thesis, p 263, University of California, Berkeley.
26. Kochendoerfer, G. G., Verdegem, P. J. E., van der Hoef, I., Lugtenburg, J., and Mathies, R. A. (1996) Biochemistry 35, 16230-16240.
27. Murphy, J. T., and Lagarias, J. C. (1997) Photochem. Photobiol. 65, 750-758.
28. Andel, F., III, Hasson, K. C., Gai, F., Anfinrud, P. A., and Mathies, R. A. (1997) Biospectroscopy 3, 421-433.
29. Terry, M. J., Maines, M. D., and Lagarias, J. C. (1993) J. Biol. Chem. 268, 26099-26106.
30. Cornejo, J., Beale, S. I., Terry, M. J., and Lagarias, J. C. (1992) J. Biol. Chem. 167, 14790-14798.
31. Kim, M., Mathies, R. A., Hoff, W. D., and Hellingwerf, K. J. (1995) Biochemistry 34, 12669-12672.
32. Mathies, R. A., Oseroff, A. R., and Stryer, L. (1976) Proc. Natl. Acad. Sci. U.S.A. 73, 1-5.
33. Lagarias, J. L., Kelly, J. M., Cyr, K. L., and Smith. W. O. (1987) Photochem. Photobiol. 46, 5-13.
34. Shreve, A. P., Cherepy, N. J., and Mathies, R. A. (1992) Appl. Spectrosc. 46, 707-711.
35. Warshel, A., and Karplus, M. (1974) J. Am. Chem. Soc. 96, 5677-5689.
36. Matysik, J., Hildebrandt, P., Schlamann, W., Braslavsky, S., and Schaffner, K. (1995) Biochemistry 34, 10497-10507.
37. Myers, A. B., and Mathies, R. A. (1987) in Resonance Roman Spectra of Polyenes and Aromatics (Spiro, T. G., Ed.) pp 1-58, John Wiley & Sons, Inc., New York.
38. Abe, M., Kitagawa, T., and Kyogoku, Y. (1978) J. Chem. Phys. 69, 4526-4534.
39. Kitagawa, T., Kyogoku, Y., Iizuka, T., and Saito, M. I. (1976) J. Am. Chem. Soc. 98, 5169-5173.
40. Curry, B., Palings, I., Broek, A. D., Pardoen, J. A., Lugtenburg, J., and Mathies, R. (1985) in Advances in Infrared and Raman Spectroscopy 12 (Clark, J. H., and Hester, R. E., Eds.) pp 115-178, Wiley, Heyden.
41. Li, L., and Lagarias, J. C. (1992) J. Biol. Chem. 267, 19204-19210.
42. Murphy, J. T., and Lagarias, J. C. (1997) Curr. Biol. 7, 870-876.
43. Mathies, R. A., and Li, X.-Y. (1995) Biophys. Chem. 56, 47-55.
44. Kitagawa, T. (1986) in Spectroscope of Biological Systems (Clark, J. H., and Hester, R. E., Eds.) pp 443-481, John Wiley and Sons Ltd., New York.
45. Kitagawa, T., Iizuka, T., Ikeda-Saito, M., and Kyogoku, Y. (1975) Chem. Lett., 849-852.
46. Spiro, T. G., and Strekas, T. C. (1974) J. Am. Chem. Soc. 96, 338-345.
47. Schirmer, T., Bode, W., and Huber, R. (1987) J. Mol. Biol. 196, 677-695.
48. Kikuchi, H., Sugimoto, T., and Mimuro, M. (1997) Chem. Phys. Lett. 274, 460-465.
49. Eyring, G., Curry, B., Broek, A., Lugtenburg, J., and Mathies, R. (1982) Biochemistry 21, 384-393.
50. Rudiger, W., Thummler, F., Cmiel, E., and Schneider, S. (1983) Proc. Natl. Acad. Sci. U.S.A. 80, 6244-6248.
51. Thummler, F., and Rudiger, W. (1983) Tetrahedron 39, 1943-1951.
52. Mathies, R. A., Lin, S. W., Ames, J. B., and Pollard, W. T. (1991) Annu. Rev. Biophys. Biophys. Chem. 20, 491-518.
53. Genick, U., Soltis, S., Kuhn, P., Canestrelli, I., and Getzoff, E. (1998) Nature (London) 392, 206-209.
54. Schulten, K., and Tavan, P. (1978) Nature (London) 272, 85-86.
55. Wang, Q., Kochendoerfer, G. G., Schoenlein, R. W., Verdegem, P. J. E., Lugtenburg, J., Mathies, R. A., and Shank, C. V. (1996) J. Phys. Chem. 100, 17388-17394.
56. Holzwarth, A. R., Wendler, J., Ruzsicska, B. P., Braslavsky, S. E., and Schaffner, K. (1984) Biochim. Biophys. Acta 791, 265-273.
57. Kandori, H., Yoshihara, K., and Tokutomi, S. (1992) J. Am. Chem. Soc. 114, 10958-10959.
58. Sineshchekov, V. A., Lapko, V. N., Sineshchekov, A. V., Kozhukh, G. V., and Udal'tsov, A. V. (1990) J. Photochem. Photobiol. B: Biol. 5, 219-229.
59. Gensch, T., Churio, M. S., Braslavsky, S. E., and Schaffner, K. (1996) Photochem. Photobiol. 63, 719-725.
60. Bischoff, M., Hermann, G., Rentsch, S., and Strehlow, D. (1998) J. Phys. Chem. 102, 4399-4404.