RpaB, another response regulator operating circadian clock-dependent transcriptional regulation in Synechococcus elongatus PCC 7942

Journal of Biological Chemistry

Volumn 287, Issue 31, 2012, Pages 26321-26327

  Hanaoka, Mitsumasa ^a,b,c   Takai, Naoki ^c,d,g   Hosokawa, Norimune ^e   Fujiwara, Masayuki ^a   Akimoto, Yuki ^a,b   Kobori, Nami ^a   Iwasaki, Hideo ^c,e   Kondo, Takao ^c,d   Tanaka, Kan ^a,b,c,f  

^a CHIBA UNIVERSITY   (Japan)

^b UNIVERSITY OF TOKYO   (Japan)

^c JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

^d NAGOYA UNIVERSITY   (Japan)

^e WASEDA UNIVERSITY   (Japan)

^f TOKYO INSTITUTE OF TECHNOLOGY   (Japan)

^g YOKOHAMA CITY UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CIRCADIAN CLOCK; GENE TRANSCRIPTIONS; IN-VITRO ANALYSIS; IN-VIVO; PARALOGS; RESPONSE REGULATORS; RNA POLYMERASE; SYNECHOCOCCUS ELONGATUS; TRANSCRIPTIONAL REGULATION; TWO COMPONENT SYSTEMS;

CLOCKS; GENES; PLANTS (BOTANY); RNA;

TRANSCRIPTION;

RNA POLYMERASE;

ARTICLE; BACTERIAL GENE; CIRCADIAN RHYTHM; CONTROLLED STUDY; FEEDBACK SYSTEM; GEL MOBILITY SHIFT ASSAY; GENE; GENE IDENTIFICATION; GENE INTERACTION; GENETIC ASSOCIATION; GENETIC VARIABILITY; KAIBC GENE; MOLECULAR DYNAMICS; NONHUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROMOTER REGION; QUANTITATIVE ANALYSIS; RPAA GENE; RPAB GENE; RPOD6 GENE; SIGF2 GENE; SYNECHOCOCCUS ELONGATUS; TRANSCRIPTION REGULATION;

BACTERIAL PROTEINS; CHROMATIN IMMUNOPRECIPITATION; CIRCADIAN CLOCKS; CIRCADIAN RHYTHM SIGNALING PEPTIDES AND PROTEINS; ELECTROPHORETIC MOBILITY SHIFT ASSAY; GENE EXPRESSION REGULATION, BACTERIAL; GENOME, BACTERIAL; PROMOTER REGIONS, GENETIC; PROTEIN BINDING; REAL-TIME POLYMERASE CHAIN REACTION; SYNECHOCOCCUS; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC;

CYANOBACTERIA; KAIA; SASA; SYNECHOCOCCUS ELONGATUS PCC 7942;

EID: 84864392477     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M111.338251     Document Type: Article

References (30)

1. Young, M. W., and Kay, S. A. (2001) Time zones: a comparative genetics of circadian clocks. Nat. Rev. Genet. 2, 702-715 (Pubitemid 33674792)
2. Ishiura, M., Kutsuna, S., Aoki, S., Iwasaki, H., Andersson, C. R., Tanabe, A., Golden, S. S., Johnson, C. H., and Kondo, T. (1998) Expression of a gene cluster kaiABC as a circadian feedback process in cyanobacteria. Science 281, 1519-1523 (Pubitemid 28425578)
3. Iwasaki, H., Nishiwaki, T., Kitayama, Y., Nakajima, M., and Kondo, T. (2002) KaiA-stimulated KaiC phosphorylation in circadian timing loops in cyanobacteria. Proc. Natl. Acad. Sci. U.S.A. 99, 15788-15793 (Pubitemid 35404008)
4. Williams, S. B., Vakonakis, I., Golden, S. S., and LiWang, A. C. (2002) Structure and function from the circadian clock protein KaiA of Synechococcus elongatus: a potential clock input mechanism. Proc. Natl. Acad. Sci. U.S.A. 99, 15357-15362 (Pubitemid 35403939)
5. Kageyama, H., Kondo, T., and Iwasaki, H. (2003) Circadian formation of clock protein complexes by KaiA, KaiB, KaiC, and SasA in cyanobacteria. J. Biol. Chem. 278, 2388-2395 (Pubitemid 36801312)
6. Nishiwaki, T., Satomi, Y., Nakajima, M., Lee, C., Kiyohara, R., Kageyama, H., Kitayama, Y., Temamoto, M., Yamaguchi, A., Hijikata, A., Go, M., Iwasaki, H., Takao, T., and Kondo, T. (2004) Role of KaiC phosphorylation in the circadian clock system of Synechococcus elongatus PCC 7942. Proc. Natl. Acad. Sci. U.S.A. 101, 13927-13932 (Pubitemid 39298509)
7. Nakajima, M., Imai, K., Ito, H., Nishiwaki, T., Murayama, Y., Iwasaki, H., Oyama, T., and Kondo, T. (2005) Reconstitution of circadian oscillation of cyanobacterial KaiC phosphorylation in vitro. Science 308, 414-415 (Pubitemid 40530079)
8. Liu, Y., Tsinoremas, N. F., Johnson, C. H., Lebedeva, N. V., Golden, S. S., Ishiura, M., and Kondo, T. (1995) Circadian orchestration of gene expression in cyanobacteria. Genes Dev. 9, 1469-1478
9. Ito, H., Mutsuda, M., Murayama, Y., Tomita, J., Hosokawa, N., Terauchi, K., Sugita, C., Sugita, M., Kondo, T., and Iwasaki, H. (2009) Cyanobacterial daily life with Kai-based circadian and diurnal genome-wide transcriptional control in Synechococcus elongatus. Proc. Natl. Acad. Sci. U.S.A.106, 14168-14173
10. Vijayan, V., Zuzow, R., and O'Shea, E. K. (2009) Oscillations in supercoiling drive circadian gene expression in cyanobacteria. Proc. Natl. Acad. Sci. U.S.A. 106, 22564-22568
11. Tomita, J., Nakajima, M., Kondo, T., and Iwasaki, H. (2005) No transcription- translation feedback in circadian rhythm of KaiC phosphorylation. Science 307, 251-254 (Pubitemid 40116239)
12. Hosokawa, N., Hatakeyama, T. S., Kojima, T., Kikuchi, Y., Ito, H., and Iwasaki, H. (2011) Circadian transcriptional regulation by the posttranslational oscillator without de novo clock gene expression in Synechococcus. Proc. Natl. Acad. Sci. U.S.A. 108, 15396-15401
13. Smith, R. M., and Williams, S. B. (2006) Circadian rhythms in gene transcription imparted by chromosome compaction in the cyanobacterium Synechococcus elongatus. Proc. Natl. Acad. Sci. U.S.A. 103, 8564-8569 (Pubitemid 43838495)
14. Woelfle, M. A., Xu, Y., Qin, X., and Johnson, C. H. (2007) Circadian rhythms of superhelical status of DNA in cyanobacteria. Proc. Natl. Acad. Sci. U.S.A. 104, 18819-18824 (Pubitemid 350210780)
15. Iwasaki, H., Williams, S. B., Kitayama, Y., Ishiura, M., Golden, S. S., and Kondo, T. (2000) A kaiC-interacting sensory histidine kinase, SasA, necessary to sustain robust circadian oscillation in cyanobacteria. Cell 101, 223-233 (Pubitemid 32004749)
16. Takai, N., Nakajima, M., Oyama, T., Kito, R., Sugita, C., Sugita, M., Kondo, T., and Iwasaki, H. (2006) A KaiC-associating SasA-RpaA two-component regulatory system as a major circadian timing mediator in cyanobacteria. Proc. Natl. Acad. Sci. U.S.A. 103, 12109-12114 (Pubitemid 44215819)
17. Nishimura, H., Nakahira, Y., Imai, K., Tsuruhara, A., Kondo, H., Hayashi, H., Hirai, M., Saito, H., and Kondo, T. (2002) Mutations in KaiA, a clock protein, extend the period of circadian rhythm in the cyanobacterium Synechococcus elongatus PCC 7942. Microbiology 148, 2903-2909
18. Seki, A., Hanaoka, M., Akimoto, Y., Masuda, S., Iwasaki, H., and Tanaka, K. (2007) Induction of a group 2 σ factor, RPOD3, by high light and the underlying mechanism in Synechococcus elongatus PCC 7942. J. Biol. Chem. 282, 36887-36894
19. Hanaoka, M., and Tanaka, K. (2008) Dynamics of RpaB-promoter interaction during high light stress, revealed by chromatin immunoprecipitation (ChIP) analysis in Synechococcus elongatus PCC 7942. Plant J. 56, 327-335
20. Rippka, R. (1988) Isolation and purification of cyanobacteria. Methods Enzymol. 167, 3-27
21. McCleary, W. R., and Stock, J. B. (1994) Acetyl phosphate and the activation of two-component response regulators. J. Biol. Chem. 269, 31567-31572 (Pubitemid 24379516)
22. Shin, S., and Park, C. (1995) Modulation of flagellar expression in Escherichia coli by acetyl phosphate and the osmoregulator OmpR. J. Bacteriol. 177, 4696-4702
23. Ashby, M. K., and Mullineaux, C. W. (1999) Cyanobacterial ycf27 gene products regulate energy transfer from phycobilisomes to photosystems I and II. FEMS Microbiol. Lett. 181, 253-260
24. Kappell, A. D., and van Waasbergen, L. G. (2007) The response regulator RpaB binds the high light regulatory 1 sequence upstream of the highlight-inducible hliB gene from the cyanobacterium Synechocystis PCC 6803. Arch. Microbiol. 187, 337-342 (Pubitemid 46452217)
25. O'Neill, J. S., and Reddy, A. B. (2011) Circadian clocks in human red blood cells. Nature 469, 498-503
26. O'Neill, J. S., van Ooijen, G., Dixon, L. E., Troein, C., Corellou, F., Bouget, F. Y., Reddy, A. B., and Millar, A. J. (2011) Circadian rhythms persist without transcription in a eukaryote. Nature 469, 554-558
27. Golden, S. S. (2003) Timekeeping in bacteria: the cyanobacterial circadian clock. Curr. Opin. Microbiol. 6, 535-540
28. Kutsuna, S., Nakahira, Y., Katayama, M., Ishiura, M., and Kondo, T. (2005) Transcriptional regulation of the circadian clock operon kaiBC by upstream regions in cyanobacteria. Mol. Microbiol. 57, 1474-1484 (Pubitemid 41176537)
29. Taniguchi, Y., Katayama, M., Ito, R., Takai, N., Kondo, T., and Oyama, T. (2007) labA: a novel gene required for negative feedback regulation of the cyanobacterial circadian clock protein KaiC. Genes Dev. 21, 60-70 (Pubitemid 46089708)
30. Taniguchi, Y., Takai, N., Katayama, M., Kondo, T., and Oyama, T. (2010) Three major output pathways from the KaiABC-based oscillator cooperate to generate robust circadian kaiBC expression in cyanobacteria. Proc. Natl. Acad. Sci. U.S.A. 107, 3263-3268