-
1
-
-
0027190489
-
Circadian rhythms in prokaryotes: Luciferase as a reporter of circadian gene expression in cyanobacteria
-
Kondo T, Strayer CA, Kulkarni RD, Taylor W, Ishiura M, Golden SS, Johnson CH: Circadian rhythms in prokaryotes: luciferase as a reporter of circadian gene expression in cyanobacteria. Proc Natl Acad Sci USA 1993, 90:5672-5676.
-
(1993)
Proc Natl Acad Sci USA
, vol.90
, pp. 5672-5676
-
-
Kondo, T.1
Strayer, C.A.2
Kulkarni, R.D.3
Taylor, W.4
Ishiura, M.5
Golden, S.S.6
Johnson, C.H.7
-
2
-
-
0347936336
-
Cyanobacterial circadian rhythms
-
Golden SS, Ishiura M, Johnson CH, Kondo T: Cyanobacterial circadian rhythms. Annu Rev Plant Physiol Plant Mol Biol 1997, 48:327-354.
-
(1997)
Annu Rev Plant Physiol Plant Mol Biol
, vol.48
, pp. 327-354
-
-
Golden, S.S.1
Ishiura, M.2
Johnson, C.H.3
Kondo, T.4
-
4
-
-
0035458732
-
Time zones: A comparative genetics of circadian clocks
-
Young MW, Kay SA: Time zones: a comparative genetics of circadian clocks. Nat Rev Genet 2001, 2:702-715.
-
(2001)
Nat Rev Genet
, vol.2
, pp. 702-715
-
-
Young, M.W.1
Kay, S.A.2
-
5
-
-
0036713612
-
Central and peripheral circadian oscillator mechanisms in flies and mammals
-
Glossop NR, Hardin PE: Central and peripheral circadian oscillator mechanisms in flies and mammals. J Cell Sci 2002, 115:3369-3377.
-
(2002)
J Cell Sci
, vol.115
, pp. 3369-3377
-
-
Glossop, N.R.1
Hardin, P.E.2
-
6
-
-
0033104504
-
Physical interactions among circadian clock proteins KaiA, KaiB and KaiC in cyanobacteria
-
Iwasaki H, Taniguchi Y, Ishiura M, Kondo T: Physical interactions among circadian clock proteins KaiA, KaiB and KaiC in cyanobacteria. EMBO J 1999, 18:1137-1145.
-
(1999)
EMBO J
, vol.18
, pp. 1137-1145
-
-
Iwasaki, H.1
Taniguchi, Y.2
Ishiura, M.3
Kondo, T.4
-
7
-
-
0037462789
-
Circadian formation of clock protein complexes by KaiA, KaiB, KaiC and SasA in cyanobacteria
-
Kageyama H, Kondo T, Iwasaki H: Circadian formation of clock protein complexes by KaiA, KaiB, KaiC and SasA in cyanobacteria. J Biol Chem 2003, 278:2388-2395. The authors prepared soluble cyanobacterial extracts from samples throughout the circadian cycle and used filtration chromatography and immunoblotting to conclude that KaiA, KaiB, KaiC and SasA form high molecular weight complexes during the night (or subjective night). The dynamics of this complex formation likely underpin the timing mechanism.
-
(2003)
J Biol Chem
, vol.278
, pp. 2388-2395
-
-
Kageyama, H.1
Kondo, T.2
Iwasaki, H.3
-
8
-
-
0037168601
-
Circadian clock protein KaiC forms ATP-dependent hexameric rings and binds DNA
-
Mori T, Saveliev SV, Xu Y, Stafford WF, Cox MM, Inman RB, Johnson CH: Circadian clock protein KaiC forms ATP-dependent hexameric rings and binds DNA. Proc Natl Acad Sci USA 2002, 99:17203-17208. The authors showed that KaiC from Synechococcus lividus P-2 forms hexameric rings in an ATP-dependent manner and binds to forked DNA structures in vitro.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 17203-17208
-
-
Mori, T.1
Saveliev, S.V.2
Xu, Y.3
Stafford, W.F.4
Cox, M.M.5
Inman, R.B.6
Johnson, C.H.7
-
9
-
-
0348026753
-
ATP-induced hexameric ring structure of the cyanobacterial circadian clock protein KaiC
-
Hayashi F, Suzuki H, Iwase R, Uzumaki T, Miyake A, Shen JR, Imada K, Furukawa Y, Yonekura K, Namba K et al.: ATP-induced hexameric ring structure of the cyanobacterial circadian clock protein KaiC. Genes Cells 2003, 8:287-296. This paper shows ATP-dependent hexamer formation by KaiC from Thermosynechococcus elongatus BP-1, and suggests that dynamic interactions occur in the central cavity of a pot-shaped KaiC hexamer.
-
(2003)
Genes Cells
, vol.8
, pp. 287-296
-
-
Hayashi, F.1
Suzuki, H.2
Iwase, R.3
Uzumaki, T.4
Miyake, A.5
Shen, J.R.6
Imada, K.7
Furukawa, Y.8
Yonekura, K.9
Namba, K.10
-
10
-
-
0037180437
-
Structure and function from the circadian clock protein KaiA of Synechococcus elongatus: A potential clock input mechanism
-
Williams SB, Vakonakis I, Golden SS, LiWang AC: Structure and function from the circadian clock protein KaiA of Synechococcus elongatus: a potential clock input mechanism. Proc Natl Acad Sci USA 2002, 99:15357-15362. NMR structural analysis revealed that the amino terminal domain of KaiA is a pseudo-receiver. The carboxy terminal domain stimulates autophosphorylation of KaiC, suggesting a mechanism for input into the central oscillator.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 15357-15362
-
-
Williams, S.B.1
Vakonakis, I.2
Golden, S.S.3
LiWang, A.C.4
-
11
-
-
0033945328
-
Application of bioluminescence to the study of circadian rhythms in cyanobacteria
-
Andersson CR, Tsinoremas NF, Shelton J, Lebedeva NV, Yarrow J, Min H, Golden SS: Application of bioluminescence to the study of circadian rhythms in cyanobacteria. Methods Enzymol 2000, 305:527-542.
-
(2000)
Methods Enzymol
, vol.305
, pp. 527-542
-
-
Andersson, C.R.1
Tsinoremas, N.F.2
Shelton, J.3
Lebedeva, N.V.4
Yarrow, J.5
Min, H.6
Golden, S.S.7
-
12
-
-
0027994843
-
Circadian clock mutants of cyanobacteria
-
Kondo T, Tsinoremas NF, Golden SS, Johnson CH, Kutsuna S, Ishiura M: Circadian clock mutants of cyanobacteria. Science 1994, 266:1233-1236.
-
(1994)
Science
, vol.266
, pp. 1233-1236
-
-
Kondo, T.1
Tsinoremas, N.F.2
Golden, S.S.3
Johnson, C.H.4
Kutsuna, S.5
Ishiura, M.6
-
13
-
-
0032483510
-
Expression of a gene cluster kaiABC as a circadian feedback process in cyanobacteria
-
Ishiura M, Kutsuna S, Aoki S, Iwasaki H, Andersson CR, Tanabe A, Golden SS, Johnson CH, Kondo T: Expression of a gene cluster kaiABC as a circadian feedback process in cyanobacteria. Science 1998, 281:1519-1523.
-
(1998)
Science
, vol.281
, pp. 1519-1523
-
-
Ishiura, M.1
Kutsuna, S.2
Aoki, S.3
Iwasaki, H.4
Andersson, C.R.5
Tanabe, A.6
Golden, S.S.7
Johnson, C.H.8
Kondo, T.9
-
14
-
-
0034646509
-
A KaiC-interacting sensory histidine kinase, SasA, necessary to sustain robust circadian oscillation in cyanobacteria
-
Iwasaki H, Williams SB, Kitayama Y, Ishiura M, Golden SS, Kondo T: A KaiC-interacting sensory histidine kinase, SasA, necessary to sustain robust circadian oscillation in cyanobacteria. Cell 2000, 101:223-233.
-
(2000)
Cell
, vol.101
, pp. 223-233
-
-
Iwasaki, H.1
Williams, S.B.2
Kitayama, Y.3
Ishiura, M.4
Golden, S.S.5
Kondo, T.6
-
15
-
-
0034604449
-
CikA, a bacteriophytochrome that resets the cyanobacterial circadian clock
-
Schmitz O, Katayama M, Williams SB, Kondo T, Golden SS: CikA, a bacteriophytochrome that resets the cyanobacterial circadian clock. Science 2000, 289:765-768.
-
(2000)
Science
, vol.289
, pp. 765-768
-
-
Schmitz, O.1
Katayama, M.2
Williams, S.B.3
Kondo, T.4
Golden, S.S.5
-
16
-
-
0031900732
-
A period-extender gene, pex, that extends the period of the circadian clock in the cyanobacterium Synechococcus sp. strain PCC 7942
-
Kutsuna S, Kondo T, Aoki S, Ishiura M: A period-extender gene, pex, that extends the period of the circadian clock in the cyanobacterium Synechococcus sp. strain PCC 7942. J Bacteriol 1998, 180:2167-2174.
-
(1998)
J Bacteriol
, vol.180
, pp. 2167-2174
-
-
Kutsuna, S.1
Kondo, T.2
Aoki, S.3
Ishiura, M.4
-
17
-
-
0037315039
-
IdpA encodes an iron-sulfur protein involved in light-dependent modulation of the circadian period in the cyanobacterium Synechococcus elongatus PCC 7942
-
Katayama M, Kondo T, Xiong J, Golden SS: IdpA encodes an iron-sulfur protein involved in light-dependent modulation of the circadian period in the cyanobacterium Synechococcus elongatus PCC 7942. J Bacteriol 2003, 185:1415-1422.
-
(2003)
J Bacteriol
, vol.185
, pp. 1415-1422
-
-
Katayama, M.1
Kondo, T.2
Xiong, J.3
Golden, S.S.4
-
18
-
-
0033000930
-
cpmA, a gene involved in an output pathway of the cyanobacterial circadian system
-
Katayama M, Tsinoremas NF, Kondo T, Golden SS: cpmA, a gene involved in an output pathway of the cyanobacterial circadian system. J Bacteriol 1999, 181:3516-3524.
-
(1999)
J Bacteriol
, vol.181
, pp. 3516-3524
-
-
Katayama, M.1
Tsinoremas, N.F.2
Kondo, T.3
Golden, S.S.4
-
19
-
-
0036285605
-
Roles for sigma factors in global circadian regulation of the cyanobacterial genome
-
Nair U, Ditty JL, Min H, Golden SS: Roles for sigma factors in global circadian regulation of the cyanobacterial genome. J Bacteriol 2002, 184:3530-3538.
-
(2002)
J Bacteriol
, vol.184
, pp. 3530-3538
-
-
Nair, U.1
Ditty, J.L.2
Min, H.3
Golden, S.S.4
-
20
-
-
0036739815
-
Mutations in KaiA, a clock protein, extend the period of circadian rhythm in the cyanobacterium Synechococcus elongatus PCC 7942
-
Nishimura H, Nakahira Y, Imai K, Tsuruhara A, Kondo H, Hayashi H, Hirai M, Saito H, Kondo T: Mutations in KaiA, a clock protein, extend the period of circadian rhythm in the cyanobacterium Synechococcus elongatus PCC 7942. Microbiology 2002, 148:2903-2909.
-
(2002)
Microbiology
, vol.148
, pp. 2903-2909
-
-
Nishimura, H.1
Nakahira, Y.2
Imai, K.3
Tsuruhara, A.4
Kondo, H.5
Hayashi, H.6
Hirai, M.7
Saito, H.8
Kondo, T.9
-
21
-
-
0030606608
-
Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions (supplement)
-
Kaneko T, Sato S, Kotani H, Tanaka A, Asamizu E, Nakamura Y, Miyajima N, Hirosawa M, Sugiura M, Sasamoto S et al.: Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions (supplement). DNA Res 1996, 3:185-209.
-
(1996)
DNA Res
, vol.3
, pp. 185-209
-
-
Kaneko, T.1
Sato, S.2
Kotani, H.3
Tanaka, A.4
Asamizu, E.5
Nakamura, Y.6
Miyajima, N.7
Hirosawa, M.8
Sugiura, M.9
Sasamoto, S.10
-
22
-
-
0030606607
-
Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions
-
Kaneko T, Sato S, Kotani H, Tanaka A, Asamizu E, Nakamura Y, Miyajima N, Hirosawa M, Sugiura M, Sasamoto S et al.: Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions. DNA Res 1996, 3:109-136.
-
(1996)
DNA Res
, vol.3
, pp. 109-136
-
-
Kaneko, T.1
Sato, S.2
Kotani, H.3
Tanaka, A.4
Asamizu, E.5
Nakamura, Y.6
Miyajima, N.7
Hirosawa, M.8
Sugiura, M.9
Sasamoto, S.10
-
23
-
-
0037133331
-
Long-term microclimatic stress causes rapid adaptive radiation of kaiABC clock gene family in a cyanobacterium, Nostoc linckia, from 'Evolution Canyons' I and II, Israel
-
Dvornyk V, Vinogradova O, Nevo E: Long-term microclimatic stress causes rapid adaptive radiation of kaiABC clock gene family in a cyanobacterium, Nostoc linckia, from 'Evolution Canyons' I and II, Israel. Proc Natl Acad Sci USA 2002, 99:2082-2087.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 2082-2087
-
-
Dvornyk, V.1
Vinogradova, O.2
Nevo, E.3
-
24
-
-
0034663770
-
Genes controlling circadian rhythm are widely distributed in cyanobacteria
-
Lorne J, Scheffer J, Lee A, Painter M, Miao VP: Genes controlling circadian rhythm are widely distributed in cyanobacteria. FEMS Microbiol Lett 2000, 189:129-133.
-
(2000)
FEMS Microbiol Lett
, vol.189
, pp. 129-133
-
-
Lorne, J.1
Scheffer, J.2
Lee, A.3
Painter, M.4
Miao, V.P.5
-
25
-
-
0035783051
-
Circadian programming in cyanobacteria
-
Mori T, Johnson CH: Circadian programming in cyanobacteria. Semin Cell Dev Biol 2001, 12:271-278.
-
(2001)
Semin Cell Dev Biol
, vol.12
, pp. 271-278
-
-
Mori, T.1
Johnson, C.H.2
-
26
-
-
0034602708
-
Nucleotide binding and autophosphorylation of the clock protein KaiC as a circadian timing process of cyanobacteria
-
Nishiwaki T, Iwasaki H, Ishiura M, Kondo T: Nucleotide binding and autophosphorylation of the clock protein KaiC as a circadian timing process of cyanobacteria. Proc Natl Acad Sci USA 2000, 97:495-499.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 495-499
-
-
Nishiwaki, T.1
Iwasaki, H.2
Ishiura, M.3
Kondo, T.4
-
27
-
-
0036400593
-
Histidine protein kinases: Key signal transducers outside the animal kingdom
-
REVIEWS3013
-
Wolanin PM, Thomason PA, Stock JB: Histidine protein kinases: key signal transducers outside the animal kingdom. Genome Biol 2002, 3:REVIEWS3013.
-
(2002)
Genome Biol
, vol.3
-
-
Wolanin, P.M.1
Thomason, P.A.2
Stock, J.B.3
-
29
-
-
0033214785
-
Crystal structure and induction mechanism of AmiC-AmiR: A ligand-regulated transcription antitermination complex
-
O'Hara BP, Norman RA, Wan PT, Roe SM, Barrett TE, Drew RE, Pearl LH: Crystal structure and induction mechanism of AmiC-AmiR: a ligand-regulated transcription antitermination complex. EMBO J 1999, 18:5175-5186.
-
(1999)
EMBO J
, vol.18
, pp. 5175-5186
-
-
O'Hara, B.P.1
Norman, R.A.2
Wan, P.T.3
Roe, S.M.4
Barrett, T.E.5
Drew, R.E.6
Pearl, L.H.7
-
30
-
-
0034604423
-
Cloning of the Arabidopsis clock gene TOC1, an autoregulatory response regulator homolog
-
Strayer C, Oyama T, Schultz TF, Raman R, Somers DE, Mas P, Panda S, Kreps JA, Kay SA: Cloning of the Arabidopsis clock gene TOC1, an autoregulatory response regulator homolog. Science 2000, 289:768-771.
-
(2000)
Science
, vol.289
, pp. 768-771
-
-
Strayer, C.1
Oyama, T.2
Schultz, T.F.3
Raman, R.4
Somers, D.E.5
Mas, P.6
Panda, S.7
Kreps, J.A.8
Kay, S.A.9
-
31
-
-
0033924103
-
Genes encoding pseudo-response regulators: Insight into His-to-Asp phosphorelay and circadian rhythm in Arabidopsis thaliana
-
Makino S, Kiba T, Imamura A, Hanaki N, Nakamura A, Suzuki T, Taniguchi M, Ueguchi C, Sugiyama T, Mizuno T: Genes encoding pseudo-response regulators: insight into His-to-Asp phosphorelay and circadian rhythm in Arabidopsis thaliana. Plant Cell Physiol 2000, 41:791-803.
-
(2000)
Plant Cell Physiol
, vol.41
, pp. 791-803
-
-
Makino, S.1
Kiba, T.2
Imamura, A.3
Hanaki, N.4
Nakamura, A.5
Suzuki, T.6
Taniguchi, M.7
Ueguchi, C.8
Sugiyama, T.9
Mizuno, T.10
-
32
-
-
0036756344
-
Sequence-specific resonance assignments of the N-terminal, 105-residue KaiC-interacting domain of SasA, a protein necessary for a robust circadian rhythm in Synechococcus elongatus
-
Klewer DA, Williams SB, Golden SS, LiWang AC: Sequence-specific resonance assignments of the N-terminal, 105-residue KaiC-interacting domain of SasA, a protein necessary for a robust circadian rhythm in Synechococcus elongatus. J Biomol NMR 2002, 24:77-78.
-
(2002)
J Biomol NMR
, vol.24
, pp. 77-78
-
-
Klewer, D.A.1
Williams, S.B.2
Golden, S.S.3
LiWang, A.C.4
-
33
-
-
0035843996
-
Two KaiA-binding domains of cyanobacterial circadian clock protein KaiC
-
Taniguchi Y, Yamaguchi A, Hijikata A, Iwasaki H, Kamagata K, Ishiura M, Go M, Kondo T: Two KaiA-binding domains of cyanobacterial circadian clock protein KaiC. FEBS Lett 2001, 496:86-90.
-
(2001)
FEBS Lett
, vol.496
, pp. 86-90
-
-
Taniguchi, Y.1
Yamaguchi, A.2
Hijikata, A.3
Iwasaki, H.4
Kamagata, K.5
Ishiura, M.6
Go, M.7
Kondo, T.8
-
34
-
-
0037881861
-
KaiB functions as an attenuator of KaiC phosphorylation in the cyanobacteria circadian clock system
-
Kitayama Y, Iwasaki H, Nishiwaki T, Kondo T: KaiB functions as an attenuator of KaiC phosphorylation in the cyanobacteria circadian clock system. EMBO J 2003, 22:1-8. The authors report that KaiB partitions in a particulate fraction during part of the circadian cycle, and when released to the cytosol associates with KaiA-KaiC and decreases the phosphorylation of KaiC. The work links cellular localization, protein-protein interaction and protein modification state as components of the timekeeping mechanism.
-
(2003)
EMBO J
, vol.22
, pp. 1-8
-
-
Kitayama, Y.1
Iwasaki, H.2
Nishiwaki, T.3
Kondo, T.4
-
35
-
-
0038219594
-
Cyanobacterial circadian clockwork: Roles of KaiA, KaiB and the kaiBC promoter in regulating KaiC
-
Xu Y, Mori T, Johnson CH: Cyanobacterial circadian clockwork: roles of KaiA, KaiB and the kaiBC promoter in regulating KaiC. EMBO J 2003, 22:2117-2126. The authors show that specific kai promoter information is not necessary for the timing mechanism, unlike the transcriptional feedback loops of eukaryotic circadian clock models.
-
(2003)
EMBO J
, vol.22
, pp. 2117-2126
-
-
Xu, Y.1
Mori, T.2
Johnson, C.H.3
-
36
-
-
0001792698
-
Two-component signal transduction systems: Structure-function relationships and mechanisms of catalysis
-
Edited by Hoch JA, Silhavy TJ. Washington DC: ASM Press
-
Stock JB, Surette MG, Levit M, Park P: Two-component signal transduction systems: structure-function relationships and mechanisms of catalysis. In Two-Component Signal Transduction. Edited by Hoch JA, Silhavy TJ. Washington DC: ASM Press; 1995:25-51.
-
(1995)
Two-Component Signal Transduction
, pp. 25-51
-
-
Stock, J.B.1
Surette, M.G.2
Levit, M.3
Park, P.4
-
37
-
-
0037805675
-
Biochemical properties of CikA, an unusual phytochrome-like histidine protein kinase that resets the circadian clock in Synechococcus elongatus PCC 7942
-
Mutsuda M, Michel KP, Zhang X, Montgomery BL, Golden SS: Biochemical properties of CikA, an unusual phytochrome-like histidine protein kinase that resets the circadian clock in Synechococcus elongatus PCC 7942. J Biol Chem 2003, 278:19102-19110. This work assigns regulatory roles to the GAF and pseudo-receiver domains of CikA in modulating kinase activity.
-
(2003)
J Biol Chem
, vol.278
, pp. 19102-19110
-
-
Mutsuda, M.1
Michel, K.P.2
Zhang, X.3
Montgomery, B.L.4
Golden, S.S.5
-
38
-
-
0027305566
-
Cloning of a sensory-kinase-encoding gene that belongs to the two-component regulatory family from the cyanobacterium Synechococcus sp. PCC 7942
-
Nagaya M, Aiba H, Mizuno T: Cloning of a sensory-kinase-encoding gene that belongs to the two-component regulatory family from the cyanobacterium Synechococcus sp. PCC 7942. Gene 1993, 131:119-124.
-
(1993)
Gene
, vol.131
, pp. 119-124
-
-
Nagaya, M.1
Aiba, H.2
Mizuno, T.3
-
39
-
-
0031032072
-
Circadian rhythms in rapidly dividing cyanobacteria
-
Kondo T, Mori T, Lebedeva NV, Aoki S, Ishiura M, Golden SS: Circadian rhythms in rapidly dividing cyanobacteria. Science 1997, 275:224-227.
-
(1997)
Science
, vol.275
, pp. 224-227
-
-
Kondo, T.1
Mori, T.2
Lebedeva, N.V.3
Aoki, S.4
Ishiura, M.5
Golden, S.S.6
-
40
-
-
0029042379
-
Circadian orchestration of gene expression in cyanobacteria
-
Liu Y, Tsinoremas NF, Johnson CH, Lebedeva NV, Golden SS, Ishiura M, Kondo T: Circadian orchestration of gene expression in cyanobacteria. Genes Dev 1995, 9:1469-1478.
-
(1995)
Genes Dev
, vol.9
, pp. 1469-1478
-
-
Liu, Y.1
Tsinoremas, N.F.2
Johnson, C.H.3
Lebedeva, N.V.4
Golden, S.S.5
Ishiura, M.6
Kondo, T.7
|