Shivajiella indica gen. nov., sp. nov., a marine bacterium of the family " Cyclobacteriaceae" with nitrate reducing activity

Systematic and Applied Microbiology

Volumn 35, Issue 5, 2012, Pages 320-325

  Anil Kumar, P ^b   Aravind, R ^a   Francis, K ^a   Bhumika, V ^b   Ritika, C ^b   Priyashanth, P ^a   Srinivas, T N R ^a  

^a NATIONAL INSTITUTE OF OCEANOGRAPHY   (India)

^b INSTITUTE OF MICROBIAL TECHNOLOGY   (India)

Author keywords

16S rRNA gene sequence based phylogeny; Chemotaxonomic analysis; Shivajiella indica

Indexed keywords

AMOXICILLIN; AMPICILLIN; AZITHROMYCIN; BACITRACIN; CARDIOLIPIN; CEFALOTIN; CHLORAMPHENICOL; CIPROFLOXACIN; ERYTHROMYCIN; GENTAMICIN; KANAMYCIN; METICILLIN; NALIDIXIC ACID; NEOMYCIN; NITRATE; NITROFURANTOIN; NORFLOXACIN; PENICILLIN G; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLGLYCEROL; RIFAMPICIN; RNA 16S; STREPTOMYCIN; TETRACYCLINE; TOBRAMYCIN; TRIMETHOPRIM; VANCOMYCIN;

ANTIBIOTIC SENSITIVITY; ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; DNA DNA HYBRIDIZATION; GENE SEQUENCE; MARINE BACTERIUM; NITRATE REDUCING BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SHIVAJIELLA INDICA;

BACTEROIDETES; GENES, BACTERIAL; INDIA; NITRATES; OXIDATION-REDUCTION; PHYLOGENY; PONDS; RNA, RIBOSOMAL, 16S;

ALGAE; AQUIFLEXUM; BACTERIA (MICROORGANISMS); NEGIBACTERIA;

EID: 84864291531     PISSN: 07232020     EISSN: 16180984     Source Type: Journal    
DOI: 10.1016/j.syapm.2012.04.004     Document Type: Article

References (31)

1. Altschul S.F., Gish W., Miller W., Myers E.W., Lipman D.J. Basic local alignment search tool. Mol. Biol. 1990, 215:403-410.
2. Anil Kumar P., Srinivas T.N.R., Madhu S., Ruth Manorama R., Shivaji S. Indibacter alkaliphilus gen. nov., sp. nov., a novel alkaliphilic bacterium isolated from haloalkaline Lonar Lake, India. Int. J. Syst. Evol. Microbiol. 2010, 60:721-726.
3. Anil Kumar P., Srinivas T.N.R., Pavan Kumar P., Madhu S., Shivaji S. Nitritalea halalkaliphila gen. nov., sp. nov., a novel alkaliphilic bacterium of the family 'Cyclobacteriaceae', phylum 'Bacteroidetes'. Int. J. Syst. Evol. Microbiol. 2010, 60:2320-2325.
4. Anil Kumar P., Srinivas T.N.R., Madhu S., Sravan Kumar S., Singh S., Naqvi S.W.A., Mayilraj S., Shivaji S. Cecembia lonarensis gen. nov., sp. nov., a novel haloalkalitolerant bacterium of the family 'Cyclobacteriaceae', isolated from a haloalkaline lake and emended descriptions of the genera Indibacter Nitritalea, Belliella and Aquiflexum. Int. J. Syst. Evol. Microbiol. 2011, 10.1099/ijs.0.038604-0.
5. Arun A.B., Chen W.M., Lai W.A., Chao J.H., Rekha P.D., Shen F.T., Singh S., Young C.C. Muricauda lutaonensis sp. nov., a moderate thermophile isolated from a coastal hot spring. Int. J. Syst. Evol. Microbiol. 2009, 59:2738-2742.
6. Asker D., Beppu T., Ueda K. Unique diversity of carotenoid-producing bacteria isolated from Misasa, a radioactive site in Japan. Appl. Microbiol. Biotechnol. 2007, 77:383-392.
7. Bowman J.P., Nichols C.M., Gibson J.A. Algoriphagus ratkowskyi gen. nov., sp. nov., Brumimicrobium glaciale gen. nov., sp. nov., Cryomorpha ignava gen. nov., sp. nov. and Crocinitomix catalasitica gen. nov., sp. nov., novel flavobacteria isolated from various polar habitats. Int. J. Syst. Evol. Microbiol. 2003, 53:1343-1355.
8. Brettar I., Christen R., Höfle M.G. Aquiflexum balticum gen. nov., sp. nov., a novel marine bacterium of the Cytophaga-Flavobacterium-Bacteroides group isolated from surface water of the central Baltic Sea. Int. J. Syst. Evol. Microbiol. 2004, 54:2335-2341.
9. Copa-Patiño J.L., Arenas M., Soliveri J., Sánchez-Porro C., Ventosa A. Algoriphagus hitonicola sp. nov., isolated from an athalassohaline lagoon. Int. J. Syst. Evol. Microbiol. 2008, 58:424-428.
10. Guindon S., Lethiec F., Duroux P., Gascuel O. PHYML Online - a web server for fast maximum likelihood-based phylogenetic inference. Nucleic Acids Res. 2005, 33:W557-W559.
11. Kämpfer P., Young C.C., Chen W.M., Rekha P.D., Fallschissel K., Lodders N., Chou J.H., Shen F.T., Frischmann A., Busse H.J., Arun A.B. Fontibacter flavus gen. nov., sp. nov., a member of the family 'Cyclobacteriaceae', isolated from a hot spring. Int. J. Syst. Evol. Microbiol. 2010, 60:2066-2070.
12. Lane D.J. 16S/23S rRNA sequencing. Nucleic Acid Techniques in Bacterial Systematics 1991, 115-175. Wiley, Chichester. E. Stackebrandt, M. Goodfellow (Eds.).
13. Liu Y., Li H., Jiang J.T., Liu Y.H., Song X.F., Xu C.J., Liu Z.P. Algoriphagus aquatilis sp. nov., isolated from a freshwater lake. Int. J. Syst. Evol. Microbiol. 2009, 59:1759-1763.
14. Ludwig W., Strunk O., Westram R., Richter L., Meier H., Yadhukumar, Buchner A., Lai T., Steppi S., Jobb G., Förster W., Brettske I., Gerber S., Ginhart A.W., Gross O., Grumann S., Hermann S., Jost R., König A., Liss T., Lüssmann R., May M., Nonhoff B., Reichel B., Strehlow R., Stamatakis A., Stuckmann N., Vilbig A., Lenke M., Ludwig T., Bode A., Schleifer K.H. ARB: a software environment for sequence data. Nucleic Acids Res. 2004, 32:1363-1371.
15. Nedashkovskaya O.I., Ludwig W. Family II. Cyclobacteriaceae fam. nov. Bergey's Manual of Systematic Bacteriology 2011, vol. 4:423. Springer, New York. 2nd ed.
16. Nedashkovskaya O.I., Kim S.B., Kwon K.K., Shin D.S., Luo X., Kim S.J., Mikhailov V.V. Proposal of Algoriphagus vanfongensis sp. nov., transfer of members of the genera Hongiella Yi and Chun 2004 emend. Nedashkovskaya et al. 2004 and Chimaereicella Tiago et al. 2006 to the genus Algoriphagus, and emended description of the genus Algoriphagus Bowman et al. 2003 emend. Nedashkovskaya et al. 2004. Int. J. Syst. Evol. Microbiol. 2007, 57:1988-1994.
17. Nedashkovskaya O.I., Kim S.B., Vancanneyt M., Lysenko A.M., Shin D.S., Park M.S., Lee K.H., Jung W.J., Kalinovskaya N.I., Mikhailov V.V., Bae K.S., Swings J. Echinicola pacifica gen. nov., sp. nov., a novel flexibacterium isolated from the sea urchin Strongylocentrotus intermedius. Int. J. Syst. Evol. Microbiol. 2006, 56:953-958.
18. Nedashkovskaya O.I., Vancanneyt M., Van Trappen S., Vandemeulebroecke K., Lysenko A.M., Rohde M., Falsen E., Frolova G.M., Mikhailov V.V., Swings J. Description of Algoriphagus aquimarinus sp. nov., Algoriphagus chordae sp. nov. and Algoriphagus winogradskyi sp. nov., from sea water and algae, transfer of Hongiella halophila Yi and Chun 2004 to the genus Algoriphagus as Algoriphagus halophilus comb. nov. and emended descriptions of the genera Algoriphagus Bowman et al. 2003 and Hongiella Yi and Chun 2004. Int. J. Syst. Evol. Microbiol. 2004, 54:1757-1764.
19. Ryu S.H., Nguyen T.T., Park W., Kim C.J., Jeon C.O. Runella limosa sp. nov., isolated from activated sludge. Int. J. Syst. Evol. Microbiol. 2006, 56:2757-2760.
20. Sheu S.Y., Yang C.S., Chen M.H., Arun A.B., Young C.C., Chen W.M. Arcicella aurantiaca sp. nov., isolated from stream water. Int. J. Syst. Evol. Microbiol. 2010, 60:2979-2983.
21. Srinivas T.N.R., Reddy P.V., Begum Z., Manasa P., Shivaji S. Oceanisphaera arctica sp. nov., isolated from a marine sediment of Kongsfjorden, Svalbard, Arctic. Int. J. Syst. Evol. Microbiol. 2011, 10.1099/ijs.0.036475-0.
22. Tamura K., Dudley J., Nei M., Kumar S. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
23. Thompson J.D., Higgins D.G., Gibson T.J., Plewniak F., Jeanmougin F., Higgins D.G. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 1997, 25:4876-4882.
24. Van Trappen S., Vandecandelaere I., Mergaert J., Swings J. Algoriphagus antarcticus sp. nov., a novel psychrophile from microbial mats in Antarctic lakes. Int. J. Syst. Evol. Microbiol. 2004, 54:1969-1973.
25. Vandamme P., Pot B., Gillis M., de Vos P., Kersters K., Swings J. Polyphasic taxonomy, a consensus approach to bacterial systematics. Microbiol. Rev. 1996, 60:407-438.
26. Versalovic J., Koeuth T., Lupski J.R. Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes. Nucleic Acids Res. 1991, 19:6823-6831.
27. Wayne L.G., Brenner D.J., Colwell R.R., Grimont P.A.D., Kandler O., Krichevsky M.I., Moore L.H., Moore W.E.C., Murray R.G.E., Stackebrandt E., Starr M.P., Truper H.G. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int. J. Syst. Bacteriol. 1987, 37:463-464.
28. Xu M., Wang Y., Dai J., Jiang F., Rahman E., Peng F., Fang C. Pontibacter populi sp. nov., isolated from the soil of a Euphrates poplar (Populus euphratica) forest. Int. J. Syst. Evol. Microbiol. 2012, 62:665-670.
29. Ying J.Y., Wang B.J., Yang S.S., Liu S.J. Cyclobacterium lianum sp. nov., a marine bacterium isolated from sediment of an oilfield in the South China Sea, and emended description of the genus Cyclobacterium. Int. J. Syst. Evol. Microbiol. 2006, 56:2927-2930.
30. Yoon J.H., Kang S.J., Oh T.K. Algoriphagus locisalis sp. nov., isolated from a marine solar saltern. Int. J. Syst. Evol. Microbiol. 2005, 55:1635-1639.
31. Yoon J.H., Lee M.H., Kang S.J., Oh T.K. Algoriphagus terrigena sp. nov., isolated from soil. Int. J. Syst. Evol. Microbiol. 2006, 56:777-780.