Indibacter alkaliphilus gen. nov., sp. nov., an alkaliphilic bacterium isolated from a haloalkaline Lake

International Journal of Systematic and Evolutionary Microbiology

Volumn 60, Issue 4, 2010, Pages 721-726

  Kumar, P Anil ^a   Srinivas, T N R ^a   Madhu, S ^a   Manorama, R ^a   Shivaji, S ^a  

^a CENTRE FOR CELLULAR AND MOLECULAR BIOLOGY   (India)

Author keywords

[No Author keywords available]

Indexed keywords

CAROTENOID; CATALASE; FATTY ACID DERIVATIVE; GELATINASE; ORNITHINE DECARBOXYLASE; OXIDOREDUCTASE; PHOSPHATIDYLCHOLINE; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLGLYCEROL; QUINONE DERIVATIVE; RNA 16S; TRIACYLGLYCEROL LIPASE; UREASE;

ARTICLE; BACTERIUM ISOLATE; GENE SEQUENCE; GRAM NEGATIVE BACTERIUM; INDIA; INDIBACTER ALKALIPHILUS; LAKE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENETIC TREE; PRIORITY JOURNAL; SPECIES DIFFERENTIATION; SPHINGOBACTERIALES;

BACTERIAL TYPING TECHNIQUES; BACTEROIDETES; DNA, RIBOSOMAL; FATTY ACIDS; FRESH WATER; GENES, RRNA; HYDROGEN-ION CONCENTRATION; INDIA; MOLECULAR SEQUENCE DATA; PHENOTYPE; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SODIUM CHLORIDE; SPECIES SPECIFICITY;

ALGORIPHAGUS; ALKALIPHILUS; AQUIFLEXUM; BACTERIA (MICROORGANISMS); BELLIELLA; CYCLOBACTERIUM;

EID: 77950607868     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.014076     Document Type: Article

References (40)

1. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. (1990). Basic local alignment search tool. J Mol Biol 215, 403-410.
2. Borsodi, A. K., Micsinai, A., Kovács, G., Tóth, E., Schumann, P., Kovács, A. L., Böddi, B. & Márialigeti, K. (2003). Pannonibacter phragmitetus gen. nov., sp. nov., a novel alkalitolerant bacterium isolated from decomposing reed rhizomes in a Hungarian soda lake. Int J Syst Evol Microbiol 53, 555-561.
3. Bowman, J. P., Nichols, C. M. & Gibson, J. A. (2003). Algoriphagus ratkowskyi gen. nov., sp. nov., Brumimicrobium glaciale gen. nov., sp. nov., Cryomorpha ignava gen. nov., sp. nov. and Crocinitomix catalasitica gen. nov., sp. nov., novel flavobacteria isolated from various polar habitats. Int J Syst Evol Microbiol 53, 1343-1355.
4. Brettar, I., Christen, R. & Höfle, M. G. (2004a). Belliella baltica gen. nov., sp. nov., a novel marine bacterium of the Cytophaga-Flavobacterium-Bacteroides group isolated from surface water of the central Baltic Sea. Int J Syst Evol Microbiol 54, 65-70. (Pubitemid 38181272)
5. Brettar, I., Christen, R. & Höfle, M. G. (2004b). Aquiflexum balticum gen. nov., sp. nov., a novel marine bacterium of the Cytophaga-Flavobacterium-Bacteroides group isolated from surface water of the central Baltic Sea. Int J Syst Evol Microbiol 54, 2335-2341. (Pubitemid 39585427)
6. Carrasco, I. J., Márquez, M. C., Xue, Y., Ma, Y., Cowan, D. A., Jones, B. E., Grant, W. D. & Ventosa, A. (2007). Bacillus chagannorensis sp. nov., a moderate halophile from a soda lake in Inner Mongolia, China. Int J Syst Evol Microbiol 57, 2084-2088.
7. Chun, J., Lee, J.-H., Jung, Y., Kim, M., Kim, S., Kim, B. K. & Lim, Y. W. (2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259-2261.
8. Collins, M. D., Pirouz, T., Goodfellow, M. & Minnikin, D. E. (1977). Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100, 221-230.
9. Copa-Patiño, J. L., Arenas, M., Soliveri, J., Sánchez-Porro, C. & Ventosa, A. (2008). Algoriphagus hitonicola sp. nov., isolated from an athalassohaline lagoon. Int J Syst Evol Microbiol 58, 424-428.
10. Delgado, O., Quillaguamán, J., Bakhtiar, S., Mattiasson, B., Gessesse, A. & Hatti-Kaul, R. (2006). Nesterenkonia aethiopica sp. nov., an alkaliphilic, moderate halophile isolated from an Ethiopian soda lake. Int J Syst Evol Microbiol 56, 1229-1232.
11. Doronina, N. V., Darmaeva, T. D. & Trotsenko, Y. A. (2003). Methylophaga alcalica sp. nov., a novel alkaliphilic and moderately halophilic, obligately methylotrophic bacterium from an East Mongolian saline soda lake. Int J Syst Evol Microbiol 53, 223-229.
12. Felsenstein, J. (1993). PHYLIP (phylogeny inference package), version 3.5.1. Department of Genome Sciences, University of Washington, Seattle, USA.
13. Feng, J., Zhou, P., Zhou, Y. G., Liu, S. J. & Warren-Rhodes, K. (2005). Halorubrum alkaliphilum sp. nov., a novel haloalkaliphile isolated from a soda lake in Xinjiang, China. Int J Syst Evol Microbiol 55, 149-152.
14. Groth, I., Schumann, P., Rainey, F. A., Martin, K., Schuetze, B. & Augsten, K. (1997). Demetria terragena gen. nov., sp. nov., a new genus of actinomycetes isolated from compost soil. Int J Syst Bacteriol 47, 1129-1133.
15. Guindon, S. & Gascuel, O. (2003). A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52, 696-704.
16. Hoover, R. B., Pikuta, E. V., Bej, A. K., Marsic, D., Whitman, W. B., Tang, J. & Krader, P. (2003). Spirochaeta americana sp. nov., a new haloalkaliphilic, obligately anaerobic spirochaete isolated from soda Mono Lake in California. Int J Syst Evol Microbiol 53, 815-821.
17. Joshi, A. A., Kanekar, P. P., Kelkar, A. S., Shouche, Y. S., Vani, A. A., Borgave, S. B. & Sarnaik, S. S. (2008). Cultivable bacterial diversity of alkaline Lonar lake, India. Microb Ecol 55, 163-172.
18. Kanal, H., Kobayashi, T., Aono, R. & Kudo, T. (1995). Natronococcus amylolyticus sp. nov., a haloalkaliphilic archaeon. Int J Syst Bacteriol 45, 762-766.
19. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
20. Komagata, K. & Suzuki, K. (1987). Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161-207.
21. Lane, D. J. (1991). 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics, pp. 115-175. Edited by E. Stackebrandt & M. Goodfellow. Chichester: Wiley.
22. Lányí, B. (1987). Classical and rapid identification methods for medically important bacteria. Methods Microbiol 19, 1-67.
23. Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208-218.
24. Milford, A. D., Achenbach, L. A., Jung, D. O. & Madigan, M. T. (2000). Rhodobaca bogoriensis gen. nov. and sp. nov., an alkaliphilic purple nonsulfur bacterium from African Rift Valley soda lakes. Arch Microbiol 174, 18-27.
25. Nedashkovskaya, O. I., Vancanneyt, M., Van Trappen, S., Vandemeulebroecke, K., Lysenko, A. M., Rohde, M., Falsen, E., Frolova, G. M., Mikhailov, V. V. & Swings, J. (2004). Description of Algoriphagus aquimarinus sp. nov., Algoriphagus chordae sp. nov. and Algoriphagus winogradskyi sp. nov., from sea water and algae, transfer of Hongiella halophila Yi and Chun 2004 to the genus Algoriphagus as Algoriphagus halophilus comb. nov. and emended descriptions of the genera Algoriphagus Bowman et al. 2003 and Hongiella Yi and Chun 2004. Int J Syst Evol Microbiol 54, 1757-1764. (Pubitemid 39365979)
26. Nedashkovskaya, O. I., Kim, S. B., Lee, M. S., Park, M. S., Lee, K. H., Lysenko, A. M., Oh, H. W., Mikhailov, V. V. & Bae, K. S. (2005). Cyclobacterium amurskyense sp. nov., a novel marine bacterium isolated from sea water. Int J Syst Evol Microbiol 55, 2391-2394.
27. Nedashkovskaya, O. I., Kim, S. B., Vancanneyt, M., Lysenko, A. M., Shin, D. S., Park, M. S., Lee, K. H., Jung, W. J., Kalinovskaya, N. I. & other authors (2006). Echinicola pacifica gen. nov., sp. nov., a novel flexibacterium isolated from the sea urchin Strongylocentrotus intermedius. Int J Syst Evol Microbiol 56, 953-958. (Pubitemid 43820816)
28. Nedashkovskaya, O. I., Kim, S. B., Hoste, B., Shin, D. S., Beleneva, I. A., Vancanneyt, M. & Mikhailov, V. V. (2007a). Echinicola vietnamensis sp. nov., a member of the phylum Bacteroidetes isolated from seawater. Int J Syst Evol Microbiol 57, 761-763. (Pubitemid 46711955)
29. Nedashkovskaya, O. I., Kim, S. B., Kwon, K. K., Shin, D. S., Luo, X., Kim, S. J. & Mikhailov, V. V. (2007b). Proposal of Algoriphagus vanfongensis sp. nov., transfer of members of the genera Hongiella Yi and Chun 2004 emend. Nedashkovskaya et al. 2004 and Chimaereicella Tiago et al. 2006 to the genus Algoriphagus, and emended description of the genus Algoriphagus Bowman et al. 2003 emend. Nedashkovskaya et al. 2004. Int J Syst Evol Microbiol 57, 1988-1994. (Pubitemid 47497133)
30. Raj, H. D. & Maloy, S. R. (1990). Proposal of Cyclobacterium marinus gen. nov., comb. nov., for a marine bacterium previously assigned to the genus Flectobacillus. Int J Syst Bacteriol 40, 337-347.
31. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
32. Sly, L. I., Blackall, L. L., Kraat, P. C., Tian-Shen, T. & Sangkhobol, V. (1986). The use of second derivative plots for the determination of mol% guanine plus cytosine of DNA by the thermal denaturation method. J Microbiol Methods 5, 139-156.
33. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
34. Sorokin, D. Y., Tourova, T. P., Sjollema, K. A. & Kuenen, J. G. (2003). Thialkalivibrio nitratireducens sp. nov., a nitrate-reducing member of an autotrophic denitrifying consortium from a soda lake. Int J Syst Evol Microbiol 53, 1779-1783.
35. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882. (Pubitemid 28022245)
36. Ying, J. Y., Wang, B. J., Yang, S. S. & Liu, S. J. (2006). Cyclobacterium lianum sp. nov., a marine bacterium isolated from sediment of an oilfield in the South China Sea, and emended description of the genus Cyclobacterium. Int J Syst Evol Microbiol 56, 2927-2930.
37. Yoon, J. H., Lee, M. H., Kang, S. J. & Oh, T. K. (2006). Algoriphagus terrigena sp. nov., isolated from soil. Int J Syst Evol Microbiol 56, 777-780.
38. Zavarzina, D. G., Kolganova, T. V., Bulygina, E. S., Kostrikina, N. A., Turova, T. P. & Zavarzin, G. A. (2006). Geoalkalibacter ferrihydriticus gen. nov., sp. nov., the first alkaliphilic representative of the family Geobacteraceae, isolated from a soda lake. Mikrobiologiia 75, 775-785 (in Russian).
39. Zhilina, T. N., Appel, R., Probian, C., Brossa, E. L., Harder, J., Widdel, F. & Zavarzin, G. A. (2004). Alkaliflexus imshenetskii gen. nov. sp. nov., a new alkaliphilic gliding carbohydrate-fermenting bacterium with propionate formation from a soda lake. Arch Microbiol 182, 244-253.
40. Zobell, C. E. (1941). Studies on marine bacteria. I. The cultural requirements of heterotrophic aerobes. J Mar. Res 4, 42-75.