Oceanisphaera arctica sp. nov., isolated from Arctic marine sediment, and emended description of the genus Oceanisphaera

International Journal of Systematic and Evolutionary Microbiology

Volumn 62, Issue 8, 2012, Pages 1926-1931

  Srinivas, T N R ^a   Vishnu Vardhan Reddy, P ^a   Begum, Z ^a   Manasa, P ^a   Shivaji, S ^a  

^a CENTRE FOR CELLULAR AND MOLECULAR BIOLOGY   (India)

Author keywords

[No Author keywords available]

Indexed keywords

AGAR; AMINOPHOSPHOLIPID; BACTERIAL DNA; CARDIOLIPIN; CASEIN; CATALASE; ESCULIN; GELATINASE; LONG CHAIN FATTY ACID; LYSINE DECARBOXYLASE; MEDIUM CHAIN FATTY ACID; ORNITHINE DECARBOXYLASE; OXIDOREDUCTASE; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLGLYCEROL; QUINONE DERIVATIVE; RNA 16S; SATURATED FATTY ACID; STARCH; TRIACYLGLYCEROL LIPASE; UNSATURATED FATTY ACID; UREA;

ARCTIC; ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; CHEMOTAXONOMY; DNA BASE COMPOSITION; DNA DNA HYBRIDIZATION; MARINE BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; OCEANISPHAERA ARCTICA; OCEANISPHAERA DONGHAENSIS; OCEANISPHAERA LITORALIS; PHYLOGENY; PRIORITY JOURNAL; RNA SEQUENCE;

AEROMONADACEAE; ARCTIC REGIONS; BACTERIAL TYPING TECHNIQUES; DNA, BACTERIAL; FATTY ACIDS; GEOLOGIC SEDIMENTS; MOLECULAR SEQUENCE DATA; PHOSPHOLIPIDS; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA;

BACTERIA (MICROORGANISMS); COCCOIDEA; OCEANISPHAERA; OCEANISPHAERA LITORALIS;

EID: 84864646958     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.036475-0     Document Type: Article

References (28)

1. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. (1990). Basic local alignment search tool. J Mol Biol 215, 403-410.
2. Bligh, E. G. & Dyer, W. J. (1959). A rapid method of total lipid extraction and purification. Can J Biochem Physiol 37, 911-917.
3. Chun, J., Lee, J.-H., Jung, Y., Kim, M., Kim, S., Kim, B. K. & Lim, Y. W. (2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259-2261.
4. Collins, M. D., Pirouz, T., Goodfellow, M. & Minnikin, D. E. (1977). Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100, 221-230.
5. Felsenstein, J. (1993). PHYLIP (phylogeny inference package) version 3.5.1. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
6. Groth, I., Schumann, P., Rainey, F. A., Martin, K., Schuetze, B. & Augsten, K. (1997). Demetria terragena gen. nov., sp. nov., a new genus of actinomycetes isolated from compost soil. Int J Syst Bacteriol 47, 1129-1133.
7. Guindon, S. & Gascuel, O. (2003). A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52, 696-704.
8. Hop, H., Pearson, T., Hegseth, E. N., Kovacs, K. M., Wiencke, C., Kwasniewski, S., Eiane, K., Mehlum, F., Gulliksen, B. &other authors (2002). The marine ecosystem of Kongsfjorden, Svalbard. Polar Res 21, 167-208.
9. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
10. Komagata, K. & Suzuki, K. (1987). Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161-207.
11. Lane, D. J. (1991). 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics, pp. 115-175. Edited by E. Stackebrandt & M. Goodfellow. Chichester: Wiley.
12. Lányí, B. (1987). Classical and rapid identification methods for medically important bacteria. Methods Microbiol 19, 1-67.
13. Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from micro-organisms. J Mol Biol 3, 208-218.
14. Park, S. J., Kang, C. H., Nam, Y. D., Bae, J. W., Park, Y. H., Quan, Z. X., Moon, D. S., Kim, H. J., Roh, D. H. & Rhee, S. K. (2006). Oceanisphaera donghaensis sp. nov., a halophilic bacterium from the East Sea, Korea. Int J Syst Evol Microbiol 56, 895-898.
15. Reddy, G. S. N., Aggarwal, R. K., Matsumoto, G. I. & Shivaji, S. (2000). Arthrobacter flavus sp. nov., a psychrophilic bacterium isolated from a pond in McMurdo Dry Valley, Antarctica. Int J Syst Evol Microbiol 50, 1553-1561.
16. Reddy, G. S. N., Prakash, J. S. S., Vairamani, M., Prabhakar, S., Matsumoto, G. I. & Shivaji, S. (2002a). Planococcus antarcticus and Planococcus psychrophilus spp. nov. isolated from cyanobacterial mat samples collected from ponds in Antarctica. Extremophiles 6, 253-261.
17. Reddy, G. S. N., Prakash, J. S. S., Matsumoto, G. I., Stackebrandt, E. & Shivaji, S. (2002b). Arthrobacter roseus sp. nov., a psychrophilic bacterium isolated from an Antarctic cyanobacterial mat sample. Int J Syst Evol Microbiol 52, 1017-1021.
18. Romanenko, L. A., Schumann, P., Zhukova, N. V., Rohde, M., Mikhailov, V. V. & Stackebrandt, E. (2003). Oceanisphaera litoralis gen. nov., sp. nov., a novel halophilic bacterium from marine bottom sediments. Int J Syst Evol Microbiol 53, 1885-1888.
19. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
20. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
21. Shivaji, S., Ray, M. K., Shyamala Rao, N., Saisree, L., Jagannadham, M. V., Seshu Kumar, G., Reddy, G. S. N. & Bhargava, P. M. (1992). Sphingobacterium antarcticus sp. nov.: a psychrotrophic bacterium from the soils of Schirmacher Oasis, Antarctica. Int J Syst Bacteriol 42, 102-106.
22. Sly, L. I., Blackall, L. L., Kraat, P. C., Tian-Shen, T. & Sangkhobol, V. (1986). The use of second derivative plots for the determination of mol% guanine plus cytosine of DNA by the thermal denaturation method. J Microbiol Methods 5, 139-156.
23. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
24. Srinivas, T. N. R., Nageswara Rao, S. S. S., Vishnu Vardhan Reddy, P., Pratibha, M. S., Sailaja, B., Kavya, B., Hara Kishore, K., Begum, Z., Singh, S. M. & Shivaji, S. (2009). Bacterial diversity and bioprospecting for cold-active lipases, amylases and proteases, from culturable bacteria of Kongsfjorden and Ny-alesund, Svalbard, Arctic. Curr Microbiol 59, 537-547.
25. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
26. Tourova, T. P. & Antonov, A. S. (1988). Identification of microorganisms by rapid DNA-DNA hybridization. Methods Microbiol 19, 333-355.
27. Wlodarska-Kowalczuk, M. & Weslawski, J. M. (2001). Impact of climate warming on Arctic benthic biodiversity: a case study of two Arctic glacial bays. Clim Res 18, 127-132.
28. Zobell, C. E. (1941). Studies on marine bacteria. I. The cultural requirements of heterotrophic aerobes. J Mar Res 4, 42-75.