Using metagenomic analyses to estimate the consequences of enrichment bias for pathogen detection

BMC Research Notes

Volumn 5, Issue , 2012, Pages

  Pettengill, James B ^a   McAvoy, Eugene ^b   White, James R ^c   Allard, Marc ^a   Brown, Eric ^a   Ottesen, Andrea ^a  

^a CENTER FOR DRUG EVALUATION AND RESEARCH   (United States)

^b UNIVERSITY OF FLORIDA   (United States)

^c UNIVERSITY OF MARYLAND SCHOOL OF MEDICINE   (United States)

Author keywords

Enrichment bias; Metagenomics; Pathogen; Taxonomy

Indexed keywords

LYCOPERSICON ESCULENTUM; SALMONELLA;

RNA 16S; VIRUS DNA;

ARTICLE; BACTERIAL GENOME; CLASSIFICATION; DNA SEQUENCE; EPIDEMIOLOGY; FOOD CONTAMINATION; FOOD CONTROL; FRUIT; GENETIC DATABASE; GENETICS; GROWTH, DEVELOPMENT AND AGING; ISOLATION AND PURIFICATION; METAGENOMICS; METHODOLOGY; MICROBIOLOGY; PHYLOGENY; PLANT LEAF; RIBOTYPING; SALMONELLA; TOMATO; UNITED STATES;

BIAS (EPIDEMIOLOGY); DATABASES, GENETIC; DNA, VIRAL; FOOD CONTAMINATION; FOOD MICROBIOLOGY; FRUIT; GENOME, BACTERIAL; LYCOPERSICON ESCULENTUM; METAGENOMICS; PHYLOGENY; PLANT LEAVES; RIBOTYPING; RNA, RIBOSOMAL, 16S; SALMONELLA; SEQUENCE ANALYSIS, DNA; UNITED STATES;

EID: 84864271920     PISSN: None     EISSN: 17560500     Source Type: Journal    
DOI: 10.1186/1756-0500-5-378     Document Type: Article

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