메뉴 건너뛰기




Volumn 63, Issue 4, 1997, Pages 1326-1331

Genetic diversity through the looking glass: Effect of enrichment bias

Author keywords

[No Author keywords available]

Indexed keywords

2,4 DICHLOROPHENOXYACETIC ACID; PALINDROMIC DNA;

EID: 0030958150     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/aem.63.4.1326-1331.1997     Document Type: Article
Times cited : (146)

References (35)
  • 1
    • 0021836412 scopus 로고
    • Characterization of aquatic bacteria and cloning of genes specifying partial degradation of 2,4-dichlorophenoxyacetic acid
    • Amy, P. S., J. W. Schulke, L. M. Frazier, and R. J. Seidler. 1985. Characterization of aquatic bacteria and cloning of genes specifying partial degradation of 2,4-dichlorophenoxyacetic acid. Appl. Environ. Microbiol. 49: 1237-1245.
    • (1985) Appl. Environ. Microbiol. , vol.49 , pp. 1237-1245
    • Amy, P.S.1    Schulke, J.W.2    Frazier, L.M.3    Seidler, R.J.4
  • 3
    • 0028008450 scopus 로고
    • Identification and characterization of a new plasmid carrying genes for degradation of 2,4-dichlorophenoxyacetate from Pseudomonas cepacia CSV90
    • Bhat, M. A., M. Tsuda, K. Horiike, M. Nozaki, C. S. Vaidyanathan, and T. Nakazawa. 1994. Identification and characterization of a new plasmid carrying genes for degradation of 2,4-dichlorophenoxyacetate from Pseudomonas cepacia CSV90. Appl. Environ. Microbiol. 60:307-312.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 307-312
    • Bhat, M.A.1    Tsuda, M.2    Horiike, K.3    Nozaki, M.4    Vaidyanathan, C.S.5    Nakazawa, T.6
  • 4
    • 0026808684 scopus 로고
    • Amplification of DNA from native populations of soil bacteria by using the polymerase chain reaction
    • Bruce, K. D., W. D. Hiorns, J. L. Hobman, A. M. Osborn, P. Strike, and D. A. Ritchie. 1992. Amplification of DNA from native populations of soil bacteria by using the polymerase chain reaction. Appl. Environ. Microbiol. 58:3413-3416.
    • (1992) Appl. Environ. Microbiol. , vol.58 , pp. 3413-3416
    • Bruce, K.D.1    Hiorns, W.D.2    Hobman, J.L.3    Osborn, A.M.4    Strike, P.5    Ritchie, D.A.6
  • 5
    • 0023731986 scopus 로고
    • Isolation and characterization of a new plasmid from a Flavobacterium sp. which carries the genes for degradation of 2,4-dichlorophenoxyacetate
    • Chaudry, G. R., and G. H. Huang. 1988. Isolation and characterization of a new plasmid from a Flavobacterium sp. which carries the genes for degradation of 2,4-dichlorophenoxyacetate. J. Bacteriol. 170:3897-3902.
    • (1988) J. Bacteriol. , vol.170 , pp. 3897-3902
    • Chaudry, G.R.1    Huang, G.H.2
  • 6
    • 76549256965 scopus 로고
    • Estimation of bacterial densities by means of the "most probable number"
    • Cochran, W. G. 1950. Estimation of bacterial densities by means of the "most probable number." Biometrics 6:105-116.
    • (1950) Biometrics , vol.6 , pp. 105-116
    • Cochran, W.G.1
  • 7
    • 0028085601 scopus 로고
    • Degradation of 2,4-dichlorophenoxyacetic acid by Pseudomonas cepacia DBO1(pRO101) in a dual-substrate chemostat
    • Daugherty, D. D., and S. Karel. 1994. Degradation of 2,4-dichlorophenoxyacetic acid by Pseudomonas cepacia DBO1(pRO101) in a dual-substrate chemostat. Appl. Environ. Microbiol. 60:3261-3267.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 3261-3267
    • Daugherty, D.D.1    Karel, S.2
  • 8
    • 0026723774 scopus 로고
    • Use of repetitive (repetitive extragenic palindromic and enterobacterial repetitive intergenic consensus) sequences and the polymerase chain reaction to fingerprint the genomes of Rhizobium meliloti isolates and other soil bacteria
    • de Bruijn, F. J. 1992. Use of repetitive (repetitive extragenic palindromic and enterobacterial repetitive intergenic consensus) sequences and the polymerase chain reaction to fingerprint the genomes of Rhizobium meliloti isolates and other soil bacteria. Appl. Environ. Microbiol. 58:2180-2187.
    • (1992) Appl. Environ. Microbiol. , vol.58 , pp. 2180-2187
    • De Bruijn, F.J.1
  • 9
    • 0001777908 scopus 로고
    • Isolation and characterization of a 2.4-dichlorophenoxyacetic acid-degrading soil bacterium
    • Ditzelmuller, G., M. Loidl, and F. Streichsbier. 1989. Isolation and characterization of a 2.4-dichlorophenoxyacetic acid-degrading soil bacterium. Appl. Microbiol. Biotechnol. 31:93-96.
    • (1989) Appl. Microbiol. Biotechnol. , vol.31 , pp. 93-96
    • Ditzelmuller, G.1    Loidl, M.2    Streichsbier, F.3
  • 10
    • 0019511050 scopus 로고
    • Properties of six pesticide degradation plasmids from Alcaligenes paradoxus and Alcaligenes eutrophus
    • Don, R. H., and J. M. Pemberton. 1981. Properties of six pesticide degradation plasmids from Alcaligenes paradoxus and Alcaligenes eutrophus. J. Bacteriol. 145:681-686.
    • (1981) J. Bacteriol. , vol.145 , pp. 681-686
    • Don, R.H.1    Pemberton, J.M.2
  • 11
    • 0029802391 scopus 로고    scopus 로고
    • Autoradiography method for isolation of diverse bacterial species with unique catabolic traits
    • Dunbar, J., D. C. L. Wong, M. J. Yarus, and L. J. Forney. 1996. Autoradiography method for isolation of diverse bacterial species with unique catabolic traits. Appl. Environ. Microbiol. 62:4180-4185.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 4180-4185
    • Dunbar, J.1    Wong, D.C.L.2    Yarus, M.J.3    Forney, L.J.4
  • 13
    • 0020480331 scopus 로고
    • Strategies of mixed substrate utilization in microorganisms
    • Harder, W., and L. Dijkhuizen. 1982. Strategies of mixed substrate utilization in microorganisms. Philos. Trans. R. Soc. London Ser. B 297:459-480.
    • (1982) Philos. Trans. R. Soc. London Ser. B , vol.297 , pp. 459-480
    • Harder, W.1    Dijkhuizen, L.2
  • 14
    • 0026466812 scopus 로고
    • Gene probe analysis of soil microbial populations selected by amendment with 2,4-dichlorophenoxyacetic acid (2,4-D)-degrading bacteria isolated from 2,4-D-treated field soils
    • Holben, W. E., B. M. Schroeter, V. G. M. Calabrese, R. H. Olsen, J. K. Kukor, V. O. Biederbeck, A. E. Smith, and J. M. Tiedje. 1992. Gene probe analysis of soil microbial populations selected by amendment with 2,4-dichlorophenoxyacetic acid (2,4-D)-degrading bacteria isolated from 2,4-D-treated field soils. Appl. Environ. Microbiol. 58:3941-3948.
    • (1992) Appl. Environ. Microbiol. , vol.58 , pp. 3941-3948
    • Holben, W.E.1    Schroeter, B.M.2    Calabrese, V.G.M.3    Olsen, R.H.4    Kukor, J.K.5    Biederbeck, V.O.6    Smith, A.E.7    Tiedje, J.M.8
  • 15
    • 0000752502 scopus 로고
    • The non-concept of species diversity: A critique and alternative parameters
    • Hurlbert, S. H. 1971. The non-concept of species diversity: a critique and alternative parameters. Ecology 52:577-586.
    • (1971) Ecology , vol.52 , pp. 577-586
    • Hurlbert, S.H.1
  • 16
    • 84982366888 scopus 로고
    • Bacterial populations in seawater as determined by different methods of enumeration
    • Jannasch, H. W., and G. E. Jones. 1959. Bacterial populations in seawater as determined by different methods of enumeration. Limnol. Oceanogr. 4:128-139.
    • (1959) Limnol. Oceanogr. , vol.4 , pp. 128-139
    • Jannasch, H.W.1    Jones, G.E.2
  • 17
    • 0014162576 scopus 로고
    • Enrichments of aquatic bacteria in continuous culture
    • Jannasch, H. W. 1967. Enrichments of aquatic bacteria in continuous culture. Arch. Mikrobiol. 59:165-173.
    • (1967) Arch. Mikrobiol. , vol.59 , pp. 165-173
    • Jannasch, H.W.1
  • 18
    • 0028165829 scopus 로고
    • Analysis of competition in soil among 2,4-dichlorophenoxyacetic acid-degrading bacteria
    • Ka, J. O., W. E. Holben, and J. M. Tiedje. 1994. Analysis of competition in soil among 2,4-dichlorophenoxyacetic acid-degrading bacteria. Appl. Environ. Microbiol. 60:1121-1128.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 1121-1128
    • Ka, J.O.1    Holben, W.E.2    Tiedje, J.M.3
  • 19
    • 0028265724 scopus 로고
    • Genetic and phenotypic diversity of 2,4-dichlorophenoxyacetic acid (2,4-D)-degrading bacteria isolated from 2,4-D-treated field soils
    • Ka, J. O., W. E. Holben, and J. M. Tiedje. 1994. Genetic and phenotypic diversity of 2,4-dichlorophenoxyacetic acid (2,4-D)-degrading bacteria isolated from 2,4-D-treated field soils. Appl. Environ. Microbiol. 60:1106-1115.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 1106-1115
    • Ka, J.O.1    Holben, W.E.2    Tiedje, J.M.3
  • 21
    • 84963036271 scopus 로고
    • Quantitative phyletics and the evolution of anurans
    • Kluge, A. G., and J. S. Farris. 1969. Quantitative phyletics and the evolution of anurans. Syst. Zool. 18:1-32.
    • (1969) Syst. Zool. , vol.18 , pp. 1-32
    • Kluge, A.G.1    Farris, J.S.2
  • 22
    • 0027952597 scopus 로고
    • Rapid identification of rhizobia by restriction fragment length polymorphism analysis of PCR-amplified 16S rRNA genes
    • Laguerre, G., M. Allard, F. Revoy, and N. Amarger. 1994. Rapid identification of rhizobia by restriction fragment length polymorphism analysis of PCR-amplified 16S rRNA genes. Appl. Environ. Microbiol. 60:56-63.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 56-63
    • Laguerre, G.1    Allard, M.2    Revoy, F.3    Amarger, N.4
  • 23
    • 0027787617 scopus 로고
    • Characterization of a new 2,4-dichlorophenoxyacetic acid degrading plasmid pEST4011: Physical map and localization of catabolic genes
    • Mae, A. A., R. O. Marits, N. R. Ausmees, V. M. Koiv, and A. L. Heinaru. 1993. Characterization of a new 2,4-dichlorophenoxyacetic acid degrading plasmid pEST4011: physical map and localization of catabolic genes. J. Gen. Microbiol. 139:3165-3170.
    • (1993) J. Gen. Microbiol. , vol.139 , pp. 3165-3170
    • Mae, A.A.1    Marits, R.O.2    Ausmees, N.R.3    Koiv, V.M.4    Heinaru, A.L.5
  • 24
    • 0030013485 scopus 로고    scopus 로고
    • Evidence for acquisition in nature of a chromosomal 2,4-dichlorophenoxyacetic acid/α-ketoglutarate dioxygenase gene by different Burkholderia spp.
    • Matheson, V. G., L. J. Forney, Y. Suwa, C. H. Nakatsu, A. J. Sexstone, and W. E. Holben. 1996. Evidence for acquisition in nature of a chromosomal 2,4-dichlorophenoxyacetic acid/α-ketoglutarate dioxygenase gene by different Burkholderia spp. Appl. Environ. Microhiol. 62:2457-2463.
    • (1996) Appl. Environ. Microhiol. , vol.62 , pp. 2457-2463
    • Matheson, V.G.1    Forney, L.J.2    Suwa, Y.3    Nakatsu, C.H.4    Sexstone, A.J.5    Holben, W.E.6
  • 25
    • 0029902203 scopus 로고    scopus 로고
    • A computer-simulated restriction fragment length polymorphism analysis of bacterial small-subunit rRNA genes: Efficacy of selected tetrameric restriction enzymes for studies of microbial diversity in nature
    • Moyer, C. L., J. M. Tiedje, F. C. Dobbs, and D. M. Karl. 1996. A computer-simulated restriction fragment length polymorphism analysis of bacterial small-subunit rRNA genes: efficacy of selected tetrameric restriction enzymes for studies of microbial diversity in nature. Appl. Environ. Microbiol. 62:2501-2507.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 2501-2507
    • Moyer, C.L.1    Tiedje, J.M.2    Dobbs, F.C.3    Karl, D.M.4
  • 27
    • 0010446496 scopus 로고
    • Use of rarefaction and related methods in ecology
    • K. L. Dickson, J. Cairns, Jr., and R. J. Livingston (ed.), American Society for Testing and Materials, Washington, D.C.
    • Simberloff, D. 1978. Use of rarefaction and related methods in ecology, p. 150-165. In K. L. Dickson, J. Cairns, Jr., and R. J. Livingston (ed.), Biological data in water pollution assessment: quantitative and statistical analyses. American Society for Testing and Materials, Washington, D.C.
    • (1978) Biological Data in Water Pollution Assessment: Quantitative and Statistical Analyses , pp. 150-165
    • Simberloff, D.1
  • 28
    • 0016700864 scopus 로고
    • Detection of specific sequences among DNA fragments separated by gel electrophoresis
    • Southern, E. M. 1975. Detection of specific sequences among DNA fragments separated by gel electrophoresis. J. Mol. Biol. 98:503-517.
    • (1975) J. Mol. Biol. , vol.98 , pp. 503-517
    • Southern, E.M.1
  • 29
    • 0021779934 scopus 로고
    • Measurement of in situ activities of nonphotosynthetic microorganisms in aquatic and terrestrial habitats
    • Staley, J. T., and A. Konopka. 1985. Measurement of in situ activities of nonphotosynthetic microorganisms in aquatic and terrestrial habitats. Annu. Rev. Microbiol. 39:321-346.
    • (1985) Annu. Rev. Microbiol. , vol.39 , pp. 321-346
    • Staley, J.T.1    Konopka, A.2
  • 30
    • 0342951749 scopus 로고    scopus 로고
    • Personal communication
    • Suwa, Y. Personal communication.
    • Suwa, Y.1
  • 31
    • 0029903298 scopus 로고    scopus 로고
    • Characterization of a chromosomally encoded 2,4-dichlorophenoxyacetic acid (2,4-D)/α-ketoglutarate dioxygenase from Burkholderia sp. strain RASC
    • Suwa, Y., A. D. Wright, F. Fukimori, K. A. Nummy, R. P. Hausinger, W. E. Holben, and L. J. Forney. 1996. Characterization of a chromosomally encoded 2,4-dichlorophenoxyacetic acid (2,4-D)/α-ketoglutarate dioxygenase from Burkholderia sp. strain RASC. Appl. Environ. Microhiol. 62:2464-2469.
    • (1996) Appl. Environ. Microhiol. , vol.62 , pp. 2464-2469
    • Suwa, Y.1    Wright, A.D.2    Fukimori, F.3    Nummy, K.A.4    Hausinger, R.P.5    Holben, W.E.6    Forney, L.J.7
  • 33
    • 0038987312 scopus 로고
    • The chemostat as a model system for ecological studies
    • Veldkamp, H., and J. G. Kuenen. 1973. The chemostat as a model system for ecological studies. Bull. Ecol. Res. Comm. NFR 17:347-355.
    • (1973) Bull. Ecol. Res. Comm. NFR , vol.17 , pp. 347-355
    • Veldkamp, H.1    Kuenen, J.G.2
  • 34
    • 0026323259 scopus 로고
    • Distribution of repetitive DNA sequences in cubacteria and application to fingerprinting of bacterial genomes
    • Versalovic, J., T. Koeuth, and J. R. Lupski. 1991. Distribution of repetitive DNA sequences in cubacteria and application to fingerprinting of bacterial genomes. Nucleic Acids Res. 19:6823-6831.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 6823-6831
    • Versalovic, J.1    Koeuth, T.2    Lupski, J.R.3
  • 35
    • 0029240520 scopus 로고
    • Molecular genetic analysis of the response of three soil microbial communities to the application of 2,4-D
    • Xia, X., J. Bollinger, and A. Ogram. 1995. Molecular genetic analysis of the response of three soil microbial communities to the application of 2,4-D. Microb. Ecol. 4:17-28.
    • (1995) Microb. Ecol. , vol.4 , pp. 17-28
    • Xia, X.1    Bollinger, J.2    Ogram, A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.