메뉴 건너뛰기




Volumn 42, Issue 8, 2012, Pages 855-863

Assessment of the human faecal microbiota: II. Reproducibility and associations of 16S rRNA pyrosequences

Author keywords

Alpha diversity; Bacterial phylogenetics; Beta diversity; Body mass index; Medications; Microbiome

Indexed keywords

BACTERIAL DNA; PROBIOTIC AGENT; RNA 16S;

EID: 84864003259     PISSN: 00142972     EISSN: 13652362     Source Type: Journal    
DOI: 10.1111/j.1365-2362.2012.02659.x     Document Type: Article
Times cited : (41)

References (36)
  • 2
    • 79960859891 scopus 로고    scopus 로고
    • Microbial genomics and infectious diseases
    • Relman DA. Microbial genomics and infectious diseases. N Engl J Med 2011;365:347-57.
    • (2011) N Engl J Med , vol.365 , pp. 347-357
    • Relman, D.A.1
  • 5
    • 79953137435 scopus 로고    scopus 로고
    • Human gut microbiome: the second genome of human body
    • Zhu B, Wang X, Li L. Human gut microbiome: the second genome of human body. Protein Cell 2010;1:718-25.
    • (2010) Protein Cell , vol.1 , pp. 718-725
    • Zhu, B.1    Wang, X.2    Li, L.3
  • 6
    • 77952158672 scopus 로고    scopus 로고
    • Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins
    • Turnbaugh PJ, Quince C, Faith JJ, McHardy AC, Yatsunenko T, Niazi F et al. Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins. Proc Natl Acad Sci U S A 2010;107:7503-8.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 7503-7508
    • Turnbaugh, P.J.1    Quince, C.2    Faith, J.J.3    McHardy, A.C.4    Yatsunenko, T.5    Niazi, F.6
  • 7
    • 80054960299 scopus 로고    scopus 로고
    • The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins
    • McNulty NP, Yatsunenko T, Hsiao A, Faith JJ, Muegge BD, Goodman AL et al. The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins. Sci Transl Med 2011;3:106ra106.
    • (2011) Sci Transl Med , vol.3
    • McNulty, N.P.1    Yatsunenko, T.2    Hsiao, A.3    Faith, J.J.4    Muegge, B.D.5    Goodman, A.L.6
  • 8
    • 77951941062 scopus 로고    scopus 로고
    • Effect of storage conditions on the assessment of bacterial community structure in soil and human-associated samples
    • Lauber CL, Zhou N, Gordon JI, Knight R, Fierer N. Effect of storage conditions on the assessment of bacterial community structure in soil and human-associated samples. FEMS Microbiol Lett 2010;307:80-6.
    • (2010) FEMS Microbiol Lett , vol.307 , pp. 80-86
    • Lauber, C.L.1    Zhou, N.2    Gordon, J.I.3    Knight, R.4    Fierer, N.5
  • 9
    • 77955067191 scopus 로고    scopus 로고
    • Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags
    • Wu GD, Lewis JD, Hoffmann C, Chen YY, Knight R, Bittinger K et al. Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags. BMC Microbiol 2010;10:206.
    • (2010) BMC Microbiol , vol.10 , pp. 206
    • Wu, G.D.1    Lewis, J.D.2    Hoffmann, C.3    Chen, Y.Y.4    Knight, R.5    Bittinger, K.6
  • 10
    • 77951977802 scopus 로고    scopus 로고
    • Comparative analysis of fecal DNA extraction methods with phylogenetic microarray: effective recovery of bacterial and archaeal DNA using mechanical cell lysis
    • Salonen A, Nikkila J, Jalanka-Tuovinen J, Immonen O, Rajilic-Stojanovic M, Kekkonen RA et al. Comparative analysis of fecal DNA extraction methods with phylogenetic microarray: effective recovery of bacterial and archaeal DNA using mechanical cell lysis. J Microbiol Methods 2010;81:127-34.
    • (2010) J Microbiol Methods , vol.81 , pp. 127-134
    • Salonen, A.1    Nikkila, J.2    Jalanka-Tuovinen, J.3    Immonen, O.4    Rajilic-Stojanovic, M.5    Kekkonen, R.A.6
  • 11
    • 84856061103 scopus 로고    scopus 로고
    • The currently used commercial DNA extraction methods give different results of clostridial and Actinobacterial populations derived from human fecal samples
    • Maukonen J, Simoes C, Saarela M. The currently used commercial DNA extraction methods give different results of clostridial and Actinobacterial populations derived from human fecal samples. FEMS Microbiol Ecol 2012;79:697-708.
    • (2012) FEMS Microbiol Ecol , vol.79 , pp. 697-708
    • Maukonen, J.1    Simoes, C.2    Saarela, M.3
  • 13
    • 84863999315 scopus 로고    scopus 로고
    • Assessment of the human fecal microbiota: I Measurement and reproducibility of selected enzymatic activities. Eur J Clin Invest 2012
    • Flores R, Shi J, Gail MH, Ravel J, Goedert JJ. Assessment of the human fecal microbiota: I Measurement and reproducibility of selected enzymatic activities. Eur J Clin Invest 2012.
    • Flores, R.1    Shi, J.2    Gail, M.H.3    Ravel, J.4    Goedert, J.J.5
  • 17
    • 58149200948 scopus 로고    scopus 로고
    • The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
    • Database Issue
    • Cole JR, Wang Q, Cardenas E, Fish J, Chai B, Farris RJ et al. The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res 2009; 37 (Database issue):D141-5.
    • (2009) Nucleic Acids Res , vol.37
    • Cole, J.R.1    Wang, Q.2    Cardenas, E.3    Fish, J.4    Chai, B.5    Farris, R.J.6
  • 18
    • 0002154022 scopus 로고    scopus 로고
    • A new method for non-parametric multivariate analysis of variance
    • Anderson MJ. A new method for non-parametric multivariate analysis of variance. Austral Ecol 2001;26:32-46.
    • (2001) Austral Ecol , vol.26 , pp. 32-46
    • Anderson, M.J.1
  • 19
    • 0000286531 scopus 로고
    • An ordination of upland forest communities of southern Wisconsin
    • Bray JR, Curtis JT. An ordination of upland forest communities of southern Wisconsin. Ecol Monogr 1957;27:325-49.
    • (1957) Ecol Monogr , vol.27 , pp. 325-349
    • Bray, J.R.1    Curtis, J.T.2
  • 23
    • 33845901507 scopus 로고    scopus 로고
    • Microbial ecology: human gut microbes associated with obesity
    • Ley RE, Turnbaugh PJ, Klein S, Gordon JI. Microbial ecology: human gut microbes associated with obesity. Nature 2006;444:1022-3.
    • (2006) Nature , vol.444 , pp. 1022-1023
    • Ley, R.E.1    Turnbaugh, P.J.2    Klein, S.3    Gordon, J.I.4
  • 25
    • 78649266096 scopus 로고    scopus 로고
    • Reshaping the gut microbiome with bacterial transplantation and antibiotic intake
    • Manichanh C, Reeder J, Gibert P, Varela E, Llopis M, Antolin M et al. Reshaping the gut microbiome with bacterial transplantation and antibiotic intake. Genome Res 2010;20:1411-9.
    • (2010) Genome Res , vol.20 , pp. 1411-1419
    • Manichanh, C.1    Reeder, J.2    Gibert, P.3    Varela, E.4    Llopis, M.5    Antolin, M.6
  • 26
    • 80051717743 scopus 로고    scopus 로고
    • The interplay between microbiome dynamics and pathogen dynamics in a murine model of Clostridium difficile Infection
    • Reeves AE, Theriot CM, Bergin IL, Huffnagle GB, Schloss PD, Young VB. The interplay between microbiome dynamics and pathogen dynamics in a murine model of Clostridium difficile Infection. Gut Microbes 2011;2:145-58.
    • (2011) Gut Microbes , vol.2 , pp. 145-158
    • Reeves, A.E.1    Theriot, C.M.2    Bergin, I.L.3    Huffnagle, G.B.4    Schloss, P.D.5    Young, V.B.6
  • 27
    • 79952756960 scopus 로고    scopus 로고
    • Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation
    • Dethlefsen L, Relman DA. Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation. Proc Natl Acad Sci U S A 2011;108(Suppl 1):4554-61.
    • (2011) Proc Natl Acad Sci U S A , vol.108 , Issue.SUPPL. 1 , pp. 4554-4561
    • Dethlefsen, L.1    Relman, D.A.2
  • 29
    • 84863022950 scopus 로고    scopus 로고
    • Genomic analysis identifies association of Fusobacterium with colorectal carcinoma
    • Kostic AD, Gevers D, Pedamallu CS, Michaud M, Duke F, Earl AM et al. Genomic analysis identifies association of Fusobacterium with colorectal carcinoma. Genome Res 2012;22:292-8.
    • (2012) Genome Res , vol.22 , pp. 292-298
    • Kostic, A.D.1    Gevers, D.2    Pedamallu, C.S.3    Michaud, M.4    Duke, F.5    Earl, A.M.6
  • 36
    • 77955602581 scopus 로고    scopus 로고
    • Through ageing, and beyond: gut microbiota and inflammatory status in seniors and centenarians
    • Biagi E, Nylund L, Candela M, Ostan R, Bucci L, Pini E et al. Through ageing, and beyond: gut microbiota and inflammatory status in seniors and centenarians. PLoS ONE 2010;5:e10667.
    • (2010) PLoS ONE , vol.5
    • Biagi, E.1    Nylund, L.2    Candela, M.3    Ostan, R.4    Bucci, L.5    Pini, E.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.