-
1
-
-
32044461068
-
Drosophila UNR is required for translational repression of male-specific lethal 2 mRNA during regulation of X-chromosome dosage compensation
-
Abaza I, Coll O, Patalano S, Gebauer F. 2006. Drosophila UNR is required for translational repression of male-specific lethal 2 mRNA during regulation of X-chromosome dosage compensation. Genes Dev 20: 380-389.
-
(2006)
Genes Dev
, vol.20
, pp. 380-389
-
-
Abaza, I.1
Coll, O.2
Patalano, S.3
Gebauer, F.4
-
2
-
-
66249103703
-
RNA granules: Post-transcriptional and epigenetic modulators of gene expression
-
Anderson P, Kedersha N. 2009. RNA granules: Post-transcriptional and epigenetic modulators of gene expression. Nat Rev Mol Cell Biol 10: 430-436.
-
(2009)
Nat Rev Mol Cell Biol
, vol.10
, pp. 430-436
-
-
Anderson, P.1
Kedersha, N.2
-
3
-
-
79955001405
-
Multiple mechanisms collaborate to repress nanos translation in the Drosophila ovary and embryo
-
Andrews S, Snowflack DR, Clark IE, Gavis ER. 2011. Multiple mechanisms collaborate to repress nanos translation in the Drosophila ovary and embryo. RNA 17: 967-977.
-
(2011)
RNA
, vol.17
, pp. 967-977
-
-
Andrews, S.1
Snowflack, D.R.2
Clark, I.E.3
Gavis, E.R.4
-
4
-
-
67651095905
-
Two-site phosphorylation of EPRS coordinates multimodal regulation of noncanonical translational control activity
-
Arif A, Jia J, Mukhopadhyay R, Willard B, Kinter M, Fox PL. 2009. Two-site phosphorylation of EPRS coordinates multimodal regulation of noncanonical translational control activity. Mol Cell 35: 164-180.
-
(2009)
Mol Cell
, vol.35
, pp. 164-180
-
-
Arif, A.1
Jia, J.2
Mukhopadhyay, R.3
Willard, B.4
Kinter, M.5
Fox, P.L.6
-
5
-
-
79952129827
-
Phosphorylation of glutamyl-prolyl tRNA synthetase by cyclin-dependent kinase 5 dictates transcript-selective translational control
-
Arif A, Jia J, Moodt RA, DiCorleto PE, Fox PL. 2011. Phosphorylation of glutamyl-prolyl tRNA synthetase by cyclin-dependent kinase 5 dictates transcript-selective translational control. Proc Natl Acad Sci 108: 1415-1420.
-
(2011)
Proc Natl Acad Sci
, vol.108
, pp. 1415-1420
-
-
Arif, A.1
Jia, J.2
Moodt, R.A.3
Dicorleto, P.E.4
Fox, P.L.5
-
6
-
-
0042490664
-
The RNA-binding SAM domain of Smaug defines a new family of post-transcriptional regulators
-
Aviv T, Lin Z, Lau S, Rendl LM, Sicheri F, Smibert CA. 2003. The RNA-binding SAM domain of Smaug defines a new family of post-transcriptional regulators. Nat Struct Biol 10: 614-621.
-
(2003)
Nat Struct Biol
, vol.10
, pp. 614-621
-
-
Aviv, T.1
Lin, Z.2
Lau, S.3
Rendl, L.M.4
Sicheri, F.5
Smibert, C.A.6
-
7
-
-
66049158810
-
Polysomes, P bodies and stress granules: States and fates of eukaryotic mRNAs
-
Balagopal V, Parker R. 2009. Polysomes, P bodies and stress granules: States and fates of eukaryotic mRNAs. Curr Opin Cell Biol 21: 403-408.
-
(2009)
Curr Opin Cell Biol
, vol.21
, pp. 403-408
-
-
Balagopal, V.1
Parker, R.2
-
8
-
-
0030678550
-
The regulation of the Drosophila msl-2 gene reveals a function for Sex-lethal in translational control
-
Bashaw GJ, Baker BS. 1997. The regulation of the Drosophila msl-2 gene reveals a function for Sex-lethal in translational control. Cell 89: 789-798.
-
(1997)
Cell
, vol.89
, pp. 789-798
-
-
Bashaw, G.J.1
Baker, B.S.2
-
9
-
-
42949118288
-
Ribotrap: Targeted purification of RNA-specific RNPs from cell lysates through immunoaffinity precipitation to identify regulatory proteins and RNAs
-
Beach DL, Keene JD. 2008. Ribotrap: Targeted purification of RNA-specific RNPs from cell lysates through immunoaffinity precipitation to identify regulatory proteins and RNAs. Methods Mol Biol 419: 69-91.
-
(2008)
Methods Mol Biol
, vol.419
, pp. 69-91
-
-
Beach, D.L.1
Keene, J.D.2
-
10
-
-
23944445369
-
A dual inhibitory mechanism restricts msl-2 mRNA translation for dosage compensation in Drosophila
-
Beckmann K, Grskovic M, Gebauer F, Hentze MW. 2005. A dual inhibitory mechanism restricts msl-2 mRNA translation for dosage compensation in Drosophila. Cell 122: 529-540.
-
(2005)
Cell
, vol.122
, pp. 529-540
-
-
Beckmann, K.1
Grskovic, M.2
Gebauer, F.3
Hentze, M.W.4
-
11
-
-
0024274359
-
Intra- RNA and RNA-protein cross-linking techniques in Escherichia coli ribosomes
-
Brimacombe R, Stiege W, Kyriatsoulis A, Maly P. 1988. Intra- RNA and RNA-protein cross-linking techniques in Escherichia coli ribosomes. Methods Enzymol 164: 287-309.
-
(1988)
Methods Enzymol
, vol.164
, pp. 287-309
-
-
Brimacombe, R.1
Stiege, W.2
Kyriatsoulis, A.3
Maly, P.4
-
12
-
-
84861969926
-
Insights into RNA biology from an atlas of mammalian mRNA-binding proteins
-
in press
-
Castello A, Fischer B, Schuschke K, Horos R, Beckmann BM, Strein C, Davey NE, Humphreys DT, Preiss T, Steinmetz LM, et al. 2012. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. Cell (in press).
-
(2012)
Cell
-
-
Castello, A.1
Fischer, B.2
Schuschke, K.3
Horos, R.4
Beckmann, B.M.5
Strein, C.6
Davey, N.E.7
Humphreys, D.T.8
Preiss, T.9
Steinmetz, L.M.10
-
13
-
-
0034687228
-
Synthesis of the posterior determinant Nanos is spatially restricted by a novel cotranslational regulatory mechanism
-
Clark IE, Wyckoff D, Gavis ER. 2000. Synthesis of the posterior determinant Nanos is spatially restricted by a novel cotranslational regulatory mechanism. Curr Biol 10: 1311-1314.
-
(2000)
Curr Biol
, vol.10
, pp. 1311-1314
-
-
Clark, I.E.1
Wyckoff, D.2
Gavis, E.R.3
-
14
-
-
0033695349
-
Overlapping but distinct RNA elements control repression and activation of nanos translation
-
Crucs S, Chatterjee S, Gavis ER. 2000. Overlapping but distinct RNA elements control repression and activation of nanos translation. Mol Cell 5: 457-467.
-
(2000)
Mol Cell
, vol.5
, pp. 457-467
-
-
Crucs, S.1
Chatterjee, S.2
Gavis, E.R.3
-
15
-
-
16244398690
-
Identification of 40LoVe, a Xenopus hnRNP D family protein involved in localizing a TGFb- related mRNA during oogenesis
-
Czaplinski K, Köcher T, Schelder M, Segref A, Wilm M, Mattaj IW. 2005. Identification of 40LoVe, a Xenopus hnRNP D family protein involved in localizing a TGFb- related mRNA during oogenesis. Dev Cell 8: 505-515.
-
(2005)
Dev Cell
, vol.8
, pp. 505-515
-
-
Czaplinski, K.1
Köcher, T.2
Schelder, M.3
Segref, A.4
Wilm, M.5
Mattaj, I.W.6
-
16
-
-
0029961342
-
The Nanos gradient in Drosophila embryos is generated by translational regulation
-
Dahanukar A, Wharton RP. 1996. The Nanos gradient in Drosophila embryos is generated by translational regulation. Genes Dev 10: 2610-2620.
-
(1996)
Genes Dev
, vol.10
, pp. 2610-2620
-
-
Dahanukar, A.1
Wharton, R.P.2
-
17
-
-
0033180476
-
Smaug, a novel RNA-binding protein that operates a translational switch in Drosophila
-
Dahanukar A, Walker JA, Wharton RP. 1999. Smaug, a novel RNA-binding protein that operates a translational switch in Drosophila. Mol Cell 4: 209-218.
-
(1999)
Mol Cell
, vol.4
, pp. 209-218
-
-
Dahanukar, A.1
Walker, J.A.2
Wharton, R.P.3
-
18
-
-
0033200316
-
Translation driven by an eIF4G core domain in vivo
-
De Gregorio E, Preiss T, Hentze MW. 1999. Translation driven by an eIF4G core domain in vivo. EMBO J 18: 4865-4874.
-
(1999)
EMBO J
, vol.18
, pp. 4865-4874
-
-
de Gregorio, E.1
Preiss, T.2
Hentze, M.W.3
-
19
-
-
0021219155
-
Characterization of heterogeneous nuclear RNA-protein complexes in vivo with monoclonal antibodies
-
Dreyfuss G, Choi YD, Adam SA. 1984. Characterization of heterogeneous nuclear RNA-protein complexes in vivo with monoclonal antibodies. Mol Cell Biol 4: 1104-1114.
-
(1984)
Mol Cell Biol
, vol.4
, pp. 1104-1114
-
-
Dreyfuss, G.1
Choi, Y.D.2
Adam, S.A.3
-
20
-
-
32044436719
-
Sex-lethal imparts a sex-specific function to UNR by recruiting it to the msl-2 mRNA 30 UTR: Translational repression for dosage compensation
-
Duncan K. 2006. Sex-lethal imparts a sex-specific function to UNR by recruiting it to the msl-2 mRNA 30 UTR: Translational repression for dosage compensation. Genes Dev 20: 368-379.
-
(2006)
Genes Dev
, vol.20
, pp. 368-379
-
-
Duncan, K.1
-
21
-
-
70449638286
-
The SXL-UNR corepressor complex uses a PABP-mediated mechanism to inhibit ribosome recruitment to msl-2 mRNA
-
Duncan KE, Strein C, Hentze MW. 2009. The SXL-UNR corepressor complex uses a PABP-mediated mechanism to inhibit ribosome recruitment to msl-2 mRNA. Mol Cell 36: 571-582.
-
(2009)
Mol Cell
, vol.36
, pp. 571-582
-
-
Duncan, K.E.1
Strein, C.2
Hentze, M.W.3
-
23
-
-
12344251199
-
Temporal complexity within a translational control element in the nanos mRNA
-
Forrest KM, Clark IE, Jain RA, Gavis ER. 2004. Temporal complexity within a translational control element in the nanos mRNA. Development 131: 5849-5857.
-
(2004)
Development
, vol.131
, pp. 5849-5857
-
-
Forrest, K.M.1
Clark, I.E.2
Jain, R.A.3
Gavis, E.R.4
-
24
-
-
0028341733
-
Translational regulation of nanos by RNA localization
-
Gavis ER, Lehmann R. 1994. Translational regulation of nanos by RNA localization. Nature 369: 315-318.
-
(1994)
Nature
, vol.369
, pp. 315-318
-
-
Gavis, E.R.1
Lehmann, R.2
-
25
-
-
0029793587
-
A conserved 90 nucleotide element mediates translational repression of nanos RNA
-
Gavis ER, Lunsford L, Bergsten SE, Lehmann R. 1996. A conserved 90 nucleotide element mediates translational repression of nanos RNA. Development 122: 2791-2800.
-
(1996)
Development
, vol.122
, pp. 2791-2800
-
-
Gavis, E.R.1
Lunsford, L.2
Bergsten, S.E.3
Lehmann, R.4
-
26
-
-
5044229348
-
Molecular mechanisms of translational control
-
Gebauer F, Hentze M. 2004. Molecular mechanisms of translational control. Nat Rev Mol Cell Biol 5: 827-835.
-
(2004)
Nat Rev Mol Cell Biol
, vol.5
, pp. 827-835
-
-
Gebauer, F.1
Hentze, M.2
-
27
-
-
0033229825
-
Translational control of dosage compensation in Drosophila by Sex-lethal: Cooperative silencing via the 50 and 30 UTRs of msl-2 mRNA is independent of the poly(A) tail
-
Gebauer F, Corona DF, Preiss T, Becker PB, Hentze MW. 1999. Translational control of dosage compensation in Drosophila by Sex-lethal: Cooperative silencing via the 50 and 30 UTRs of msl-2 mRNA is independent of the poly(A) tail. EMBO J 18: 6146-6154.
-
(1999)
EMBO J
, vol.18
, pp. 6146-6154
-
-
Gebauer, F.1
Corona, D.F.2
Preiss, T.3
Becker, P.B.4
Hentze, M.W.5
-
28
-
-
0037716752
-
Drosophila Sexlethal inhibits the stable association of the 40S ribosomal subunit with msl-2 mRNA
-
Gebauer F, Grskovic M, Hentze MW. 2003. Drosophila Sexlethal inhibits the stable association of the 40S ribosomal subunit with msl-2 mRNA. Mol Cell 11: 1397-1404.
-
(2003)
Mol Cell
, vol.11
, pp. 1397-1404
-
-
Gebauer, F.1
Grskovic, M.2
Hentze, M.W.3
-
29
-
-
67649206510
-
Drosophila dosage compensation: A complex voyage to the X chromosome
-
Gelbart ME, Kuroda MI. 2009. Drosophila dosage compensation: A complex voyage to the X chromosome. Development 136: 1399-1410.
-
(2009)
Development
, vol.136
, pp. 1399-1410
-
-
Gelbart, M.E.1
Kuroda, M.I.2
-
32
-
-
0018432123
-
Ultraviolet light-induced crosslinking of mRNA to proteins
-
Greenberg JR. 1979. Ultraviolet light-induced crosslinking of mRNA to proteins. Nucleic Acids Res 6: 715-732.
-
(1979)
Nucleic Acids Res
, vol.6
, pp. 715-732
-
-
Greenberg, J.R.1
-
33
-
-
0142105380
-
A co-repressor assembly nucleated by Sex-lethal in the 30UTR mediates translational control of Drosophila msl-2mRNA
-
Grskovic M, Hentze MW, Gebauer F. 2003. A co-repressor assembly nucleated by Sex-lethal in the 30UTR mediates translational control of Drosophila msl-2mRNA. EMBO J 22: 5571-5581.
-
(2003)
EMBO J
, vol.22
, pp. 5571-5581
-
-
Grskovic, M.1
Hentze, M.W.2
Gebauer, F.3
-
34
-
-
77950920903
-
Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP
-
Hafner M, Landthaler M, Burger L, Khorshid M, Hausser J, Berninger P, Rothballer A, Ascano M, Jungkamp A-C, Munschauer M, et al. 2010. Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP. Cell 141: 129-141.
-
(2010)
Cell
, vol.141
, pp. 129-141
-
-
Hafner, M.1
Landthaler, M.2
Burger, L.3
Khorshid, M.4
Hausser, J.5
Berninger, P.6
Rothballer, A.7
Ascano, M.8
Jungkamp, A.-C.9
Munschauer, M.10
-
35
-
-
77955273674
-
The REM phase of gene regulation
-
Hentze MW, Preiss T. 2010. The REM phase of gene regulation. Trends Biochem Sci 35: 423-426.
-
(2010)
Trends Biochem Sci
, vol.35
, pp. 423-426
-
-
Hentze, M.W.1
Preiss, T.2
-
36
-
-
0023612118
-
Identification of the iron-responsive element for the translational regulation of human ferritin mRNA
-
Hentze MW, Caughman SW, Rouault TA, Barriocanal JG, Dancis A, Harford JB, Klausner RD. 1987. Identification of the iron-responsive element for the translational regulation of human ferritin mRNA. Science 238: 1570-1573.
-
(1987)
Science
, vol.238
, pp. 1570-1573
-
-
Hentze, M.W.1
Caughman, S.W.2
Rouault, T.A.3
Barriocanal, J.G.4
Dancis, A.5
Harford, J.B.6
Klausner, R.D.7
-
38
-
-
27144510561
-
Translational regulation of GCN4 and the general amino acid control of yeast
-
Hinnebusch AG. 2005. Translational regulation of GCN4 and the general amino acid control of yeast. Ann Rev Microbiol 59: 407-450.
-
(2005)
Ann Rev Microbiol
, vol.59
, pp. 407-450
-
-
Hinnebusch, A.G.1
-
39
-
-
0022968212
-
Laser cross-linking of nucleic acids to proteins. Methodology and first applications to the phage T4 DNA replication system
-
Hockensmith JW, Kubasek WL, Vorachek WR, von Hippel PH. 1986. Laser cross-linking of nucleic acids to proteins. Methodology and first applications to the phage T4 DNA replication system. J Biol Chem 261: 3512-3518.
-
(1986)
J Biol Chem
, vol.261
, pp. 3512-3518
-
-
Hockensmith, J.W.1
Kubasek, W.L.2
Vorachek, W.R.3
von Hippel, P.H.4
-
40
-
-
34249053165
-
RNA-based affinity purification reveals 7SK RNPs with distinct composition and regulation
-
Hogg JR, Collins K. 2007. RNA-based affinity purification reveals 7SK RNPs with distinct composition and regulation. RNA 13: 868-880.
-
(2007)
RNA
, vol.13
, pp. 868-880
-
-
Hogg, J.R.1
Collins, K.2
-
41
-
-
0034307483
-
Internal ribosome initiation of translation and the control of cell death
-
Holcik M, Sonenberg N, Korneluk RG. 2000. Internal ribosome initiation of translation and the control of cell death. Trends Genet 16: 469-473.
-
(2000)
Trends Genet
, vol.16
, pp. 469-473
-
-
Holcik, M.1
Sonenberg, N.2
Korneluk, R.G.3
-
42
-
-
80052972576
-
CUP promotes deadenylation and inhibits decapping of mRNA targets
-
Igreja C, Izaurralde E. 2011. CUP promotes deadenylation and inhibits decapping of mRNA targets. Genes Dev 25: 1955-1967.
-
(2011)
Genes Dev
, vol.25
, pp. 1955-1967
-
-
Igreja, C.1
Izaurralde, E.2
-
43
-
-
81055155799
-
Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes
-
Ingolia NT, Lareau LF, Weissman JS. 2011. Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes. Cell 147: 789-802.
-
(2011)
Cell
, vol.147
, pp. 789-802
-
-
Ingolia, N.T.1
Lareau, L.F.2
Weissman, J.S.3
-
44
-
-
33749130843
-
Remodeling of ribonucleoprotein complexes with DExH/D RNA helicases
-
Jankowsky E, Bowers H. 2006. Remodeling of ribonucleoprotein complexes with DExH/D RNA helicases. Nucleic Acids Res 34: 4181-4188.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 4181-4188
-
-
Jankowsky, E.1
Bowers, H.2
-
45
-
-
33748754298
-
Rapid ATP-dependent deadenylation of nanos mRNA in a cell-free system from Drosophila embryos
-
Jeske M, Meyer S, Temme C, Freudenreich D, Wahle E. 2006. Rapid ATP-dependent deadenylation of nanos mRNA in a cell-free system from Drosophila embryos. J Biol Chem 281: 25124-25133.
-
(2006)
J Biol Chem
, vol.281
, pp. 25124-25133
-
-
Jeske, M.1
Meyer, S.2
Temme, C.3
Freudenreich, D.4
Wahle, E.5
-
46
-
-
78650894705
-
Smaug assembles an ATP-dependent stable complex repressing nanos mRNA translation at multiple levels
-
Jeske M, Moritz B, Anders A, Wahle E. 2011. Smaug assembles an ATP-dependent stable complex repressing nanos mRNA translation at multiple levels. EMBO J 30: 90-103.
-
(2011)
EMBO J
, vol.30
, pp. 90-103
-
-
Jeske, M.1
Moritz, B.2
Anders, A.3
Wahle, E.4
-
47
-
-
40849118528
-
WHEP domains direct noncanonical function of glutamyl-Prolyl tRNA synthetase in translational control of gene expression
-
Jia J, Arif A, Ray PS, Fox PL. 2008. WHEP domains direct noncanonical function of glutamyl-Prolyl tRNA synthetase in translational control of gene expression. Mol Cell 29: 679-690.
-
(2008)
Mol Cell
, vol.29
, pp. 679-690
-
-
Jia, J.1
Arif, A.2
Ray, P.S.3
Fox, P.L.4
-
49
-
-
33644536745
-
Glorund, a Drosophila hnRNP F/H homolog, is an ovarian repressor of nanos translation
-
Kalifa Y, Huang T, Rosen LN, Chatterjee S, Gavis ER. 2006. Glorund, a Drosophila hnRNP F/H homolog, is an ovarian repressor of nanos translation. Dev Cell 10: 291-301.
-
(2006)
Dev Cell
, vol.10
, pp. 291-301
-
-
Kalifa, Y.1
Huang, T.2
Rosen, L.N.3
Chatterjee, S.4
Gavis, E.R.5
-
50
-
-
33846004827
-
L13a blocks 48S assembly: Role of a general initiation factor in mRNA-specific translational control
-
Kapasi P, Chaudhuri S, Vyas K, Baus D, Komar AA, Fox PL, Merrick WC, Mazumder B. 2007. L13a blocks 48S assembly: Role of a general initiation factor in mRNA-specific translational control. Mol Cell 25: 113-126.
-
(2007)
Mol Cell
, vol.25
, pp. 113-126
-
-
Kapasi, P.1
Chaudhuri, S.2
Vyas, K.3
Baus, D.4
Komar, A.A.5
Fox, P.L.6
Merrick, W.C.7
Mazumder, B.8
-
51
-
-
34250735674
-
RNA regulons: Coordination of post-transcriptional events
-
Keene JD. 2007. RNA regulons: Coordination of post-transcriptional events. Nat Rev Genet 8: 533-543.
-
(2007)
Nat Rev Genet
, vol.8
, pp. 533-543
-
-
Keene, J.D.1
-
52
-
-
0030913367
-
Sex lethal controls dosage compensation in Drosophila by a non-splicing mechanism
-
Kelley RL, Wang J, Bell L, Kuroda MI. 1997. Sex lethal controls dosage compensation in Drosophila by a non-splicing mechanism. Nature 387: 195-199.
-
(1997)
Nature
, vol.387
, pp. 195-199
-
-
Kelley, R.L.1
Wang, J.2
Bell, L.3
Kuroda, M.I.4
-
53
-
-
0005218668
-
Influences ofmRNA secondary structure on initiation by eukaryotic ribosomes
-
Kozak M. 1986. Influences ofmRNA secondary structure on initiation by eukaryotic ribosomes. Proc Natl Acad Sci 83: 2850-2854.
-
(1986)
Proc Natl Acad Sci
, vol.83
, pp. 2850-2854
-
-
Kozak, M.1
-
54
-
-
0023664507
-
Characterization and evolution of the expressed rat ferritin light subunit gene and its pseudogene family. Conservation of sequences within noncoding regions of ferritin genes
-
Leibold EA, Munro HN. 1987. Characterization and evolution of the expressed rat ferritin light subunit gene and its pseudogene family. Conservation of sequences within noncoding regions of ferritin genes. J Biol Chem 262: 7335-7341.
-
(1987)
J Biol Chem
, vol.262
, pp. 7335-7341
-
-
Leibold, E.A.1
Munro, H.N.2
-
55
-
-
66349122954
-
Genome-wide identification of human RNA editing sites by parallel DNA capturing and sequencing
-
Li JB, Levanon EY, Yoon JK, Aach J, Xie B, Leproust E, Zhang K, Gao Y, Church GM. 2009. Genome-wide identification of human RNA editing sites by parallel DNA capturing and sequencing. Science 324: 1210-1213.
-
(2009)
Science
, vol.324
, pp. 1210-1213
-
-
Li, J.B.1
Levanon, E.Y.2
Yoon, J.K.3
Aach, J.4
Xie, B.5
Leproust, E.6
Zhang, K.7
Gao, Y.8
Church, G.M.9
-
56
-
-
79952363146
-
The prospects for designer single-stranded RNA-binding proteins
-
Mackay JP, Font J, Segal DJ. 2011. The prospects for designer single-stranded RNA-binding proteins. Nat Struct Mol Biol 18: 256-261.
-
(2011)
Nat Struct Mol Biol
, vol.18
, pp. 256-261
-
-
Mackay, J.P.1
Font, J.2
Segal, D.J.3
-
57
-
-
60149086205
-
mRNA localization: Gene expression in the spatial dimension
-
Martin KC, Ephrussi A. 2009. mRNA localization: Gene expression in the spatial dimension. Cell 136: 719-730.
-
(2009)
Cell
, vol.136
, pp. 719-730
-
-
Martin, K.C.1
Ephrussi, A.2
-
58
-
-
0034811090
-
Translational silencing of ceruloplasmin requires the essential elements of mRNA circularization: Poly(A) tail, poly(A)-binding protein, and eukaryotic translation initiation factor 4G
-
Mazumder B, Seshadri V, Imataka H, Sonenberg N, Fox PL. 2001. Translational silencing of ceruloplasmin requires the essential elements of mRNA circularization: Poly(A) tail, poly(A)-binding protein, and eukaryotic translation initiation factor 4G. Mol Cell Biol 21: 6440-6449.
-
(2001)
Mol Cell Biol
, vol.21
, pp. 6440-6449
-
-
Mazumder, B.1
Seshadri, V.2
Imataka, H.3
Sonenberg, N.4
Fox, P.L.5
-
59
-
-
0142227209
-
Regulated release of L13a from the 60S ribosomal subunit as a mechanism of transcript-specific translational control
-
Mazumder B, Sampath P, Seshadri V, Maitra RK, DiCorleto PE, Fox PL. 2003. Regulated release of L13a from the 60S ribosomal subunit as a mechanism of transcript-specific translational control. Cell 115: 187-198.
-
(2003)
Cell
, vol.115
, pp. 187-198
-
-
Mazumder, B.1
Sampath, P.2
Seshadri, V.3
Maitra, R.K.4
Dicorleto, P.E.5
Fox, P.L.6
-
60
-
-
79958276198
-
Translational control via protein-regulated upstream open reading frames
-
Medenbach J, Seiler M, Hentze MW. 2011. Translational control via protein-regulated upstream open reading frames. Cell 145: 902-913.
-
(2011)
Cell
, vol.145
, pp. 902-913
-
-
Medenbach, J.1
Seiler, M.2
Hentze, M.W.3
-
61
-
-
76549101962
-
Eukaryotic cold shock domain proteins: Highly versatile regulators of gene expression
-
Mihailovich M, Militti C, Gabaldon T, Gebauer F. 2010. Eukaryotic cold shock domain proteins: Highly versatile regulators of gene expression. BioEssays 32: 109-118.
-
(2010)
BioEssays
, vol.32
, pp. 109-118
-
-
Mihailovich, M.1
Militti, C.2
Gabaldon, T.3
Gebauer, F.4
-
62
-
-
79960922805
-
Roles of Puf proteins in mRNA degradation and translation
-
Miller MA, Olivas WM. 2011. Roles of Puf proteins in mRNA degradation and translation. Wiley Interdiscip Rev RNA 2: 471-492.
-
(2011)
Wiley Interdiscip Rev RNA
, vol.2
, pp. 471-492
-
-
Miller, M.A.1
Olivas, W.M.2
-
63
-
-
60149110358
-
Pre-mRNA processing reaches back to transcription and ahead to translation
-
Moore MJ, Proudfoot NJ. 2009. Pre-mRNA processing reaches back to transcription and ahead to translation. Cell 136: 688-700.
-
(2009)
Cell
, vol.136
, pp. 688-700
-
-
Moore, M.J.1
Proudfoot, N.J.2
-
64
-
-
0022512237
-
Multiple upstream AUG codons mediate translational control of GCN4
-
Mueller PP, Hinnebusch AG. 1986. Multiple upstream AUG codons mediate translational control of GCN4. Cell 45: 201-207.
-
(1986)
Cell
, vol.45
, pp. 201-207
-
-
Mueller, P.P.1
Hinnebusch, A.G.2
-
65
-
-
55049140658
-
DAPK-ZIPK-L13a axis constitutes a negativefeedback module regulating inflammatory gene expression
-
Mukhopadhyay R, Ray PS, Arif A, Brady AK, Kinter M, Fox PL. 2008. DAPK-ZIPK-L13a axis constitutes a negativefeedback module regulating inflammatory gene expression. Mol Cell 32: 371-382.
-
(2008)
Mol Cell
, vol.32
, pp. 371-382
-
-
Mukhopadhyay, R.1
Ray, P.S.2
Arif, A.3
Brady, A.K.4
Kinter, M.5
Fox, P.L.6
-
66
-
-
67649958251
-
The GAITsystem: A gatekeeper of inflammatory gene expression
-
Mukhopadhyay R, Jia J, Arif A, Ray PS, Fox PL. 2009. The GAITsystem: A gatekeeper of inflammatory gene expression. Trends Biochem Sci 34: 324-331.
-
(2009)
Trends Biochem Sci
, vol.34
, pp. 324-331
-
-
Mukhopadhyay, R.1
Jia, J.2
Arif, A.3
Ray, P.S.4
Fox, P.L.5
-
67
-
-
0842267214
-
Reprogrammed genetic decoding in cellular gene expression
-
Namy O, Rousset JP, Napthine S, Brierley I. 2004. Reprogrammed genetic decoding in cellular gene expression. Mol Cell 13: 157-168.
-
(2004)
Mol Cell
, vol.13
, pp. 157-168
-
-
Namy, O.1
Rousset, J.P.2
Napthine, S.3
Brierley, I.4
-
68
-
-
0842328579
-
Drosophila Cup is an eIF4E-binding protein that functions in Smaugmediated translational repression
-
Nelson MR, Leidal AM, Smibert CA. 2004. Drosophila Cup is an eIF4E-binding protein that functions in Smaugmediated translational repression. EMBO J 23: 150-159.
-
(2004)
EMBO J
, vol.23
, pp. 150-159
-
-
Nelson, M.R.1
Leidal, A.M.2
Smibert, C.A.3
-
69
-
-
32244447225
-
Shape-specific recognition in the structure of the Vts1p SAM domain with RNA
-
Oberstrass FC, Lee A, Stefl R, Janis M, Chanfreau G, Allain FH. 2006. Shape-specific recognition in the structure of the Vts1p SAM domain with RNA. Nat Struct Mol Biol 13: 160-167.
-
(2006)
Nat Struct Mol Biol
, vol.13
, pp. 160-167
-
-
Oberstrass, F.C.1
Lee, A.2
Stefl, R.3
Janis, M.4
Chanfreau, G.5
Allain, F.H.6
-
70
-
-
1842608845
-
Iron metabolism and the IRE/IRP regulatory system: An update
-
Pantopoulos K. 2004. Iron metabolism and the IRE/IRP regulatory system: An update. Ann NY Acad Sci 1012: 1-13.
-
(2004)
Ann NY Acad Sci
, vol.1012
, pp. 1-13
-
-
Pantopoulos, K.1
-
71
-
-
80054990557
-
New families of human regulatory RNA structures identified by comparative analysis of vertebrate genomes
-
Parker BJ, Moltke I, Roth A, Washietl S, Wen J, Kellis M, Breaker R, Pedersen JS. 2011. New families of human regulatory RNA structures identified by comparative analysis of vertebrate genomes. Genome Res 21: 1929-1943.
-
(2011)
Genome Res
, vol.21
, pp. 1929-1943
-
-
Parker, B.J.1
Moltke, I.2
Roth, A.3
Washietl, S.4
Wen, J.5
Kellis, M.6
Breaker, R.7
Pedersen, J.S.8
-
72
-
-
64549117893
-
Dual sex-specific functions of Drosophila upstream of N-ras in the control of X chromosome dosage compensation
-
Patalano S, Mihailovich M, Belacortu Y, Paricio N, Gebauer F. 2009. Dual sex-specific functions of Drosophila upstream of N-ras in the control of X chromosome dosage compensation. Development 136: 689-698.
-
(2009)
Development
, vol.136
, pp. 689-698
-
-
Patalano, S.1
Mihailovich, M.2
Belacortu, Y.3
Paricio, N.4
Gebauer, F.5
-
73
-
-
0021799353
-
Insertion mutagenesis to increase secondary structure within the 50 noncoding region of a eukaryoticmRNA reduces translational efficiency
-
Pelletier J, Sonenberg N. 1985. Insertion mutagenesis to increase secondary structure within the 50 noncoding region of a eukaryoticmRNA reduces translational efficiency. Cell 40: 515-526.
-
(1985)
Cell
, vol.40
, pp. 515-526
-
-
Pelletier, J.1
Sonenberg, N.2
-
74
-
-
34547235967
-
A post-transcriptional pathway represses monocyte VEGF-A expression and angiogenic activity
-
Ray PS, Fox PL. 2007. A post-transcriptional pathway represses monocyte VEGF-A expression and angiogenic activity. EMBO J 26: 3360-3372.
-
(2007)
EMBO J
, vol.26
, pp. 3360-3372
-
-
Ray, P.S.1
Fox, P.L.2
-
75
-
-
34247131410
-
Macromolecular complexes as depots for releasable regulatory proteins
-
Ray PS, Arif A, Fox PL. 2007. Macromolecular complexes as depots for releasable regulatory proteins. Trends Biochem Sci 32: 158-164.
-
(2007)
Trends Biochem Sci
, vol.32
, pp. 158-164
-
-
Ray, P.S.1
Arif, A.2
Fox, P.L.3
-
76
-
-
13444259647
-
Regulation of cap-dependent translation by eIF4E inhibitory proteins
-
Richter JD, Sonenberg N. 2005. Regulation of cap-dependent translation by eIF4E inhibitory proteins. Nature 433: 477-480.
-
(2005)
Nature
, vol.433
, pp. 477-480
-
-
Richter, J.D.1
Sonenberg, N.2
-
77
-
-
78049387387
-
Maternal mRNA deadenylation and decay by the piRNA pathway in the early Drosophila embryo
-
Rouget C, Papin C, Boureux A, Meunier AC, Franco B, Robine N, Lai EC, Pelisson A, Simonelig M. 2010. Maternal mRNA deadenylation and decay by the piRNA pathway in the early Drosophila embryo. Nature 467: 1128-1132.
-
(2010)
Nature
, vol.467
, pp. 1128-1132
-
-
Rouget, C.1
Papin, C.2
Boureux, A.3
Meunier, A.C.4
Franco, B.5
Robine, N.6
Lai, E.C.7
Pelisson, A.8
Simonelig, M.9
-
78
-
-
0031000347
-
Common themes in translational and transcriptional regulation
-
Sachs AB, Buratowski S. 1997. Common themes in translational and transcriptional regulation. Trends Biochem Sci 22: 189-192.
-
(1997)
Trends Biochem Sci
, vol.22
, pp. 189-192
-
-
Sachs, A.B.1
Buratowski, S.2
-
79
-
-
77952840905
-
MicroRNAs-Targeting and target prediction
-
Saito T, Saetrom P. 2010. MicroRNAs-Targeting and target prediction. N Biotechnol 27: 243-249.
-
(2010)
N Biotechnol
, vol.27
, pp. 243-249
-
-
Saito, T.1
Saetrom, P.2
-
80
-
-
0037371348
-
Transcript- selective translational silencing by g interferon is directed by a novel structural element in the ceruloplasmin mRNA 30 untranslated region
-
Sampath P, Mazumder B, Seshadri V, Fox PL. 2003. Transcript- selective translational silencing by g interferon is directed by a novel structural element in the ceruloplasmin mRNA 30 untranslated region. Mol Cell Biol 23: 1509-1519.
-
(2003)
Mol Cell Biol
, vol.23
, pp. 1509-1519
-
-
Sampath, P.1
Mazumder, B.2
Seshadri, V.3
Fox, P.L.4
-
81
-
-
5444271940
-
Noncanonical function of glutamyl-prolyltRNA synthetase: Gene-specific silencing of translation
-
Sampath P, Mazumder B, Seshadri V, Gerber CA, Chavatte L, Kinter M, Ting SM, Dignam JD, Kim S, Driscoll DM, et al. 2004. Noncanonical function of glutamyl-prolyltRNA synthetase: Gene-specific silencing of translation. Cell 119: 195-208.
-
(2004)
Cell
, vol.119
, pp. 195-208
-
-
Sampath, P.1
Mazumder, B.2
Seshadri, V.3
Gerber, C.A.4
Chavatte, L.5
Kinter, M.6
Ting, S.M.7
Dignam, J.D.8
Kim, S.9
Driscoll, D.M.10
-
82
-
-
78649736872
-
A screen for RNA-binding proteins in yeast indicates dual functions for many enzymes
-
Scherrer T, Mittal N, Janga SC, Gerber AP. 2010. A screen for RNA-binding proteins in yeast indicates dual functions for many enzymes. PLoS ONE 5: e15499.
-
(2010)
PLoS ONE
, vol.5
-
-
Scherrer, T.1
Mittal, N.2
Janga, S.C.3
Gerber, A.P.4
-
83
-
-
79956322553
-
Global quantification of mammalian gene expression control
-
Schwanhausser B, Busse D, Li N, Dittmar G, Schuchhardt J, Wolf J, Chen W, Selbach M. 2011. Global quantification of mammalian gene expression control. Nature 473: 337-342.
-
(2011)
Nature
, vol.473
, pp. 337-342
-
-
Schwanhausser, B.1
Busse, D.2
Li, N.3
Dittmar, G.4
Schuchhardt, J.5
Wolf, J.6
Chen, W.7
Selbach, M.8
-
84
-
-
0029958353
-
Smaug protein represses translation of unlocalized nanos mRNA in the Drosophila embryo
-
Smibert CA, Wilson JE, Kerr K, Macdonald PM. 1996. Smaug protein represses translation of unlocalized nanos mRNA in the Drosophila embryo. Genes Dev 10: 2600-2609.
-
(1996)
Genes Dev
, vol.10
, pp. 2600-2609
-
-
Smibert, C.A.1
Wilson, J.E.2
Kerr, K.3
Macdonald, P.M.4
-
85
-
-
0032786907
-
Smaug, a novel and conserved protein, contributes to repression of nanosmRNAtranslation in vitro
-
Smibert CA, Lie YS, Shillinglaw W, Henzel WJ, Macdonald PM. 1999. Smaug, a novel and conserved protein, contributes to repression of nanosmRNAtranslation in vitro. RNA 5: 1535-1547.
-
(1999)
RNA
, vol.5
, pp. 1535-1547
-
-
Smibert, C.A.1
Lie, Y.S.2
Shillinglaw, W.3
Henzel, W.J.4
Macdonald, P.M.5
-
86
-
-
60149091189
-
Regulation of translation initiation in eukaryotes:Mechanisms and biological targets
-
Sonenberg N, Hinnebusch AG. 2009. Regulation of translation initiation in eukaryotes:Mechanisms and biological targets. Cell 136: 731-745.
-
(2009)
Cell
, vol.136
, pp. 731-745
-
-
Sonenberg, N.1
Hinnebusch, A.G.2
-
87
-
-
78149448558
-
Function and detection of 5-methylcytosine in eukaryotic RNA
-
Squires JE, Preiss T. 2010. Function and detection of 5-methylcytosine in eukaryotic RNA. Epigenomics 2: 709-715.
-
(2010)
Epigenomics
, vol.2
, pp. 709-715
-
-
Squires, J.E.1
Preiss, T.2
-
88
-
-
84860751168
-
Widespread occurrence of 5-methylcytosine in human coding and noncoding RNA
-
doi: 10.1093/nar/gks144
-
Squires JE, Patel HR, Nousch M, Sibbritt T, Humphreys DT, Parker BJ, Suter CM, Preiss T. 2012. Widespread occurrence of 5-methylcytosine in human coding and noncoding RNA. Nucleic Acids Res doi: 10.1093/nar/gks144.
-
(2012)
Nucleic Acids Res
-
-
Squires, J.E.1
Patel, H.R.2
Nousch, M.3
Sibbritt, T.4
Humphreys, D.T.5
Parker, B.J.6
Suter, C.M.7
Preiss, T.8
-
89
-
-
33845744069
-
SMAUG is a major regulator of maternal mRNA destabilization in Drosophila and its translation is activated by the PAN GU kinase
-
Tadros W, Goldman AL, Babak T, Menzies F, Vardy L, Orr-Weaver T, Hughes TR, Westwood JT, Smibert CA, Lipshitz HD. 2007. SMAUG is a major regulator of maternal mRNA destabilization in Drosophila and its translation is activated by the PAN GU kinase. Dev Cell 12: 143-155.
-
(2007)
Dev Cell
, vol.12
, pp. 143-155
-
-
Tadros, W.1
Goldman, A.L.2
Babak, T.3
Menzies, F.4
Vardy, L.5
Orr-Weaver, T.6
Hughes, T.R.7
Westwood, J.T.8
Smibert, C.A.9
Lipshitz, H.D.10
-
90
-
-
12644303224
-
Association of the yeast poly(A) tail binding protein with translation initiation factor eIF-4G
-
Tarun SZ Jr, Sachs AB. 1996. Association of the yeast poly(A) tail binding protein with translation initiation factor eIF-4G. EMBO J 15: 7168-7177.
-
(1996)
EMBO J
, vol.15
, pp. 7168-7177
-
-
Tarun Jr., S.Z.1
Sachs, A.B.2
-
91
-
-
0034687794
-
Identifying mRNA subsets in messenger ribonucleoprotein complexes by using cDNA arrays
-
Tenenbaum S, Carson C, Lager P, Keene J. 2000. Identifying mRNA subsets in messenger ribonucleoprotein complexes by using cDNA arrays. Proc Natl Acad Sci 97: 14085-14090.
-
(2000)
Proc Natl Acad Sci
, vol.97
, pp. 14085-14090
-
-
Tenenbaum, S.1
Carson, C.2
Lager, P.3
Keene, J.4
-
92
-
-
79953321612
-
Quantitative profiling of in vivo-assembled RNA-protein complexes using a novel integrated proteomic approach
-
M110.007385
-
Tsai BP, Wang X, Huang L, Waterman ML. 2011. Quantitative profiling of in vivo-assembled RNA-protein complexes using a novel integrated proteomic approach. Mol Cell Proteomics 10: M110.007385.
-
(2011)
Mol Cell Proteomics
, pp. 10
-
-
Tsai, B.P.1
Wang, X.2
Huang, L.3
Waterman, M.L.4
-
93
-
-
77958594113
-
Proteome-wide search reveals unexpected RNA-binding proteins in Saccharomyces cerevisiae
-
Tsvetanova NG, Klass DM, Salzman J, Brown PO. 2010. Proteome-wide search reveals unexpected RNA-binding proteins in Saccharomyces cerevisiae. PLoS ONE 5: e12671.
-
(2010)
PLoS ONE
, vol.5
-
-
Tsvetanova, N.G.1
Klass, D.M.2
Salzman, J.3
Brown, P.O.4
-
94
-
-
0242497663
-
CLIP identifies Nova-regulated RNA networks in the brain
-
Ule J. 2003. CLIP identifies Nova-regulated RNA networks in the brain. Science 302: 1212-1215.
-
(2003)
Science
, vol.302
, pp. 1212-1215
-
-
Ule, J.1
-
95
-
-
38449116475
-
In vivo stabilization of preinitiation complexes by formaldehyde cross-linking
-
Valasek L, Szamecz B, Hinnebusch AG, Nielsen KH. 2007. In vivo stabilization of preinitiation complexes by formaldehyde cross-linking. Methods Enzymol 429: 163-183.
-
(2007)
Methods Enzymol
, vol.429
, pp. 163-183
-
-
Valasek, L.1
Szamecz, B.2
Hinnebusch, A.G.3
Nielsen, K.H.4
-
96
-
-
58249110558
-
Genome-wide polysome profiling reveals an inflammation-responsive posttranscriptional operon in g interferon-activated monocytes
-
Vyas K, Chaudhuri S, Leaman DW, Komar AA, Musiyenko A, Barik S, Mazumder B. 2009. Genome-wide polysome profiling reveals an inflammation-responsive posttranscriptional operon in g interferon-activated monocytes. Mol Cell Biol 29: 458-470.
-
(2009)
Mol Cell Biol
, vol.29
, pp. 458-470
-
-
Vyas, K.1
Chaudhuri, S.2
Leaman, D.W.3
Komar, A.A.4
Musiyenko, A.5
Barik, S.6
Mazumder, B.7
-
97
-
-
0032112017
-
Circularization of mRNA by eukaryotic translation initiation factors
-
Wells SE, Hillner PE, Vale RD, Sachs AB. 1998. Circularization of mRNA by eukaryotic translation initiation factors. Mol Cell Biol 2: 135-140.
-
(1998)
Mol Cell Biol
, vol.2
, pp. 135-140
-
-
Wells, S.E.1
Hillner, P.E.2
Vale, R.D.3
Sachs, A.B.4
-
98
-
-
33845900443
-
Oskar allows nanos mRNA translation in Drosophila embryos by preventing its deadenylation by Smaug/CCR4
-
Zaessinger S, Busseau I, Simonelig M. 2006. Oskar allows nanos mRNA translation in Drosophila embryos by preventing its deadenylation by Smaug/CCR4. Development 133: 4573-4583.
-
(2006)
Development
, vol.133
, pp. 4573-4583
-
-
Zaessinger, S.1
Busseau, I.2
Simonelig, M.3
-
99
-
-
84859168499
-
The tRNA methyltransferase NSun2 stabilizes p16(INK4) mRNA by methylating the 3-untranslated region of p16
-
Zhang X, Liu Z, Yi J, Tang H, Xing J, Yu M, Tong T, Shang Y, Gorospe M, Wang W. 2012. The tRNA methyltransferase NSun2 stabilizes p16(INK4) mRNA by methylating the 3-untranslated region of p16. Nat Commun 3: 712.
-
(2012)
Nat Commun
, vol.3
, pp. 712
-
-
Zhang, X.1
Liu, Z.2
Yi, J.3
Tang, H.4
Xing, J.5
Yu, M.6
Tong, T.7
Shang, Y.8
Gorospe, M.9
Wang, W.10
-
100
-
-
79955638463
-
Structure-based prediction of RNA-binding domains and RNA-binding sites and application to structural genomics targets
-
Zhao H, Yang Y, Zhou Y. 2011. Structure-based prediction of RNA-binding domains and RNA-binding sites and application to structural genomics targets. Nucleic Acids Res 39: 3017-3025.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 3017-3025
-
-
Zhao, H.1
Yang, Y.2
Zhou, Y.3
|