Shotgun analysis of membrane proteomes using a novel combinative strategy of solution-based sample preparation coupled with liquid chromatography-tandem mass spectrometry

Journal of Chromatography B: Analytical Technologies in the Biomedical and Life Sciences

Volumn 901, Issue , 2012, Pages 18-24

  Lin, Yong ^a,b   Liu, Hui ^a   Liu, Zhonghua ^b   Wang, Xianchun ^a   Liang, Songping ^a  

^a HUNAN NORMAL UNIVERSITY   (China)

^b HUNAN AGRICULTURAL UNIVERSITY   (China)

Author keywords

Acetone precipitation; In solution digestion; LC MS MS; Membrane proteome; Sodium deoxycholate; Sodium dodecyl sulfate

Indexed keywords

EXPERIMENTAL CONDITIONS; INTEGRAL MEMBRANE PROTEINS; LC-MS/MS; LIQUID CHROMATOGRAPHY-TANDEM MASS SPECTROMETRY; LOW COSTS; MEMBRANE PROTEINS; MEMBRANE PROTEOME; PRECIPITATED PROTEINS; PRECIPITATION METHODS; PROTEIN SAMPLES; PROTEOMES; PROTEOMICS; RAT LIVERS; RE-DISSOLUTION; SAMPLE PREPARATION; SAMPLE PREPARATION METHODS; SAMPLE VOLUME; SODIUM DEOXYCHOLATE; SODIUM DODECYL SULFATE; TOTAL PROTEIN; WASHING STEPS; WATER SOLUBILITIES;

ACETONE; BIOLOGICAL MEMBRANES; DISSOLUTION; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; MEMBRANES; METHANOL; MOLECULAR BIOLOGY; PRECIPITATION (CHEMICAL); SODIUM; SODIUM SULFATE; UREA;

PROTEINS;

ACETONE; DEOXYCHOLATE SODIUM; DODECYL SULFATE SODIUM; MEMBRANE PROTEIN; PROTEOME; TRYPSIN;

ANIMAL TISSUE; ARTICLE; CONTROLLED STUDY; LIQUID CHROMATOGRAPHY; LIVER MEMBRANE; NONHUMAN; PRECIPITATION; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DEGRADATION; QUANTITATIVE ANALYSIS; RAT; SOLUBILITY; TANDEM MASS SPECTROMETRY;

ACETONE; ANIMALS; CHEMICAL PRECIPITATION; CHROMATOGRAPHY, LIQUID; LIVER; MEMBRANE PROTEINS; PEPTIDE MAPPING; PROTEOME; RATS; SODIUM DODECYL SULFATE; SOLUTIONS; TANDEM MASS SPECTROMETRY; TRYPSIN;

RATTUS;

EID: 84863780545     PISSN: 15700232     EISSN: 1873376X     Source Type: Journal    
DOI: 10.1016/j.jchromb.2012.05.035     Document Type: Article

References (40)

1. Blonder J., Goshe M.B., Moore R.J., Pasa-Tolic L., Masselon C.D., Lipton R.D M.S. J. Proteome Res. 2002, 1:351.
2. Wu C.C., Yates J.R. Nat. Biotechnol. 2003, 21:262.
3. Santoni V., Molloy M., Rabilloud T. Electrophoresis 2000, 21:1054.
4. Wei J., Sun J., Yu W., Jones A., Oeller P., Keller M., Woodnutt G., Short J.M. J. Proteome Res. 2005, 4:801.
5. Washburn M.P., Wolters D., Yates J.R. Nat. Biotechnol. 2001, 19:242.
6. Zhang H., Lin Q., Ponnusamy S., Kothandaraman N., Lim T.K., Zhao C., Kit H.S., Arijit B., Rauff M., Hew C.L., Chung M.C., Joshi S.B., Choolani M. Proteomics 2007, 7:1654.
7. Blonder J., Hale M.L., Chan K.C., Yu L.R., Lucas D.A., Conrads T.P., Zhou M., Popoff M.R., Issaq H.J., Stiles B.G., Veenstra T.D. J. Proteome Res. 2005, 4:523.
8. Wu C.C., MacCoss M.J. Curr. Opin. Mol. Ther. 2002, 4:242.
9. Blonder J., Yu L.R., Radeva G., Chan K.C., Lucas D.A., Waybright T.J., Issaq H.J., Sharom F.J., Veenstra T.D. J. Proteome Res. 2006, 5:349.
10. Masuda T., Tomita M., Ishihama Y. J. Proteome Res. 2008, 7:731.
11. Reynolds J.A., Tanford C. J. Biol. Chem. 1970, 245:5161.
12. Yu Y.Q., Gilar M., Lee P.J., Bouvier E.S.P., Gebler J.C. Anal. Chem. 2003, 75:6023.
13. Bosserhoff A., Wallach J., Frank R.W. J. Chromatogr. 1989, 473:71.
14. Zhang N., Chen R., Young N., Wishart D., Winter P., Weiner J.H., Li L. Proteomics 2007, 7:484.
15. Zhang N., Li L. Rapid Commun. Mass Spectrom. 2004, 18:889.
16. Zischka H., Gloeckner C.J., Klein C., Willmann S., Swiatek-de Lange M., Ueffing M. Proteomics 2004, 4:3776.
17. Lin Y., Zhou J., Bi D., Chen P., Wang X.C., Liang S.P. Anal. Biochem. 2008, 377:259.
18. Chen E.I., Cociorva D., Norris J.L., Yates J.R. J. Proteome Res. 2007, 6:2529.
19. Andersen P., Heron I. J. Immunol. Methods 1993, 161:29.
20. Hudgin R.L., Ashwell G. J. Biol. Chem. 1974, 249:7369.
21. Wessel D., Flügge U.I. Anal. Biochem. 1984, 138:141.
22. Lu X.N., Zhu H.N. Mol. Cell. Proteomics 2005, 4:1948.
23. WiŚniewski J.R., Zougman A., Nagaraj N., Mann M. Nat. Methods 2009, 6:359.
24. Liebler D.C., Ham A.J. Nat. Methods 2009, 6:785.
25. Botelho D., Wall M.J., Vieira D.B., Fitzsimmons S., Liu F., Doucette A. J. Proteome Res. 2010, 9:2863.
26. Puchades M., Westman A., Blennow K., Davidsson P. Rapid Commun. Mass Spectrom. 1999, 13:344.
27. Ray T.K. Biochim. Biophys. Acta 1970, 196:1.
28. Liu Y., Lin Y., Yan Y.Z., Li J.J., He Q.Z., Chen P., Wang X.C., Liang S.P. Electrophoresis 2012, 33:316.
29. Rusconi F., Valton E., Nguyen R., Dufourc E. Anal. Biochem. 2001, 295:31.
30. Ashburner M., Ball C.A., Blake J.A., Botstein D., Butler H., Cherry J.M., Davis A.P., Dolinski K., Dwight S.S., Eppig J.T., Harris M.A., Hill D.P., Issel-Tarver L., Kasarskis A., Lewis S., Matese J.C., Richardson J.E., Ringwald M., Rubin G.M., Sherlock G. Nat. Genet. 2000, 25:25.
31. Kyte J., Doolittle R.F. J. Mol. Biol. 1982, 157:105.
32. Krogh A., Larsson B., von Heijne G., Sonnhammer E.L. J. Mol. Biol. 2001, 305:567.
33. Elias J.E., Gygi S.P. Nat. Methods 2007, 4:207.
34. Lin Y., Li Y., Liu Y., Han W.J., He Q.Z., Li J.L., Chen P., Wang X.C., Liang S.P. Electrophoresis 2009, 30:3626.
35. Luque-Garcia J.L., Zhou G., Sun T.T., Neubert T.A. Anal. Chem. 2006, 78:5102.
36. Polson C., Sarkar P., Incledon B., Raguvaran V., Grant R. J. Chromatogr. B 2003, 785:263.
37. Khan A., Packer N.H. J. Proteome Res. 2006, 5:2824.
38. Kim S.C., Chen Y., Mirza S., Xu Y., Lee J., Liu P., Zhao Y. J. Proteome Res. 2006, 5:3446.
39. Carpentier S.C., Witters E., Laukens K., Deckers P., Swennen R., Panis B. Proteomics 2005, 5:2497.
40. Nandakumar M.P., Shen J., Raman B., Marten M.R. J. Proteome Res. 2003, 2:89.