-
1
-
-
0003992889
-
-
Academic Press, San Diego, Calif., 2nd edn, p xiii
-
W. H. Schlesinger, Biogeochemistry: an analysis of global change, Academic Press, San Diego, Calif., 2nd edn, 1997, p xiii, p. 588
-
(1997)
Biogeochemistry: An Analysis of Global Change
, pp. 588
-
-
Schlesinger, W.H.1
-
2
-
-
1842384464
-
-
Enzyme nomenclature 1992: recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology on the nomenclature and classification of enzymes, Published for the International Union of Biochemistry and Molecular Biology by Academic Press, San Diego, p xiii
-
E. C. Webb, International Union of Biochemistry and Molecular Biology. Nomenclature Committee, Enzyme nomenclature 1992: recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology on the nomenclature and classification of enzymes, Published for the International Union of Biochemistry and Molecular Biology by Academic Press, San Diego, 1992, p xiii, p. 862
-
(1992)
International Union of Biochemistry and Molecular Biology. Nomenclature Committee
, pp. 862
-
-
Webb, E.C.1
-
3
-
-
44449137093
-
The microbial engines that drive Earth's biogeochemical cycles
-
P. G. Falkowski T. Fenchel E. F. Delong The microbial engines that drive Earth's biogeochemical cycles Science 2008 320 1034 1039
-
(2008)
Science
, vol.320
, pp. 1034-1039
-
-
Falkowski, P.G.1
Fenchel, T.2
Delong, E.F.3
-
5
-
-
0035815113
-
Evolution of function in protein superfamilies, from a structural perspective
-
A. E. Todd C. A. Orengo J. M. Thornton Evolution of function in protein superfamilies, from a structural perspective J. Mol. Biol. 2001 307 1113 1143
-
(2001)
J. Mol. Biol.
, vol.307
, pp. 1113-1143
-
-
Todd, A.E.1
Orengo, C.A.2
Thornton, J.M.3
-
6
-
-
0142106373
-
How well is enzyme function conserved as a function of pairwise sequence identity?
-
W. Tian J. Skolnick How well is enzyme function conserved as a function of pairwise sequence identity? J. Mol. Biol. 2003 333 863 882
-
(2003)
J. Mol. Biol.
, vol.333
, pp. 863-882
-
-
Tian, W.1
Skolnick, J.2
-
9
-
-
0028181441
-
Hidden Markov models in computational biology. Applications to protein modeling
-
A. Krogh M. Brown I. S. Mian K. Sjolander D. Haussler Hidden Markov models in computational biology. Applications to protein modeling J. Mol. Biol. 1994 235 1501 1531
-
(1994)
J. Mol. Biol.
, vol.235
, pp. 1501-1531
-
-
Krogh, A.1
Brown, M.2
Mian, I.S.3
Sjolander, K.4
Haussler, D.5
-
11
-
-
0036308741
-
Enzyme function less conserved than anticipated
-
B. Rost Enzyme function less conserved than anticipated J. Mol. Biol. 2002 318 595 608
-
(2002)
J. Mol. Biol.
, vol.318
, pp. 595-608
-
-
Rost, B.1
-
12
-
-
58149203231
-
InterPro: The integrative protein signature database
-
S. Hunter R. Apweiler T. K. Attwood A. Bairoch A. Bateman D. Binns P. Bork U. Das L. Daugherty L. Duquenne R. D. Finn J. Gough D. Haft N. Hulo D. Kahn E. Kelly A. Laugraud I. Letunic D. Lonsdale R. Lopez M. Madera J. Maslen C. McAnulla J. McDowall J. Mistry A. Mitchell N. Mulder D. Natale C. Orengo A. F. Quinn J. D. Selengut C. J. Sigrist M. Thimma P. D. Thomas F. Valentin D. Wilson C. H. Wu C. Yeats InterPro: the integrative protein signature database Nucleic Acids Res. 2009 37 D211 D215
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Hunter, S.1
Apweiler, R.2
Attwood, T.K.3
Bairoch, A.4
Bateman, A.5
Binns, D.6
Bork, P.7
Das, U.8
Daugherty, L.9
Duquenne, L.10
Finn, R.D.11
Gough, J.12
Haft, D.13
Hulo, N.14
Kahn, D.15
Kelly, E.16
Laugraud, A.17
Letunic, I.18
Lonsdale, D.19
Lopez, R.20
Madera, M.21
Maslen, J.22
McAnulla, C.23
McDowall, J.24
Mistry, J.25
Mitchell, A.26
Mulder, N.27
Natale, D.28
Orengo, C.29
Quinn, A.F.30
Selengut, J.D.31
Sigrist, C.J.32
Thimma, M.33
Thomas, P.D.34
Valentin, F.35
Wilson, D.36
Wu, C.H.37
Yeats, C.38
more..
-
13
-
-
24644517567
-
Effective function annotation through catalytic residue conservation
-
R. A. George R. V. Spriggs G. J. Bartlett A. Gutteridge M. W. MacArthur C. T. Porter B. Al-Lazikani J. M. Thornton M. B. Swindells Effective function annotation through catalytic residue conservation Proc. Natl. Acad. Sci. U. S. A. 2005 102 12299 12304
-
(2005)
Proc. Natl. Acad. Sci. U. S. A.
, vol.102
, pp. 12299-12304
-
-
George, R.A.1
Spriggs, R.V.2
Bartlett, G.J.3
Gutteridge, A.4
MacArthur, M.W.5
Porter, C.T.6
Al-Lazikani, B.7
Thornton, J.M.8
Swindells, M.B.9
-
14
-
-
84858667785
-
A practical guide for the computational selection of residues to be experimentally characterized in protein families
-
10.1093/bib/bbr052
-
A. Benitez-Paez S. Cardenas-Brito A. J. Gutierrez A practical guide for the computational selection of residues to be experimentally characterized in protein families Briefings Bioinf. 2011 10.1093/bib/bbr052
-
(2011)
Briefings Bioinf.
-
-
Benitez-Paez, A.1
Cardenas-Brito, S.2
Gutierrez, A.J.3
-
15
-
-
0345864027
-
The Catalytic Site Atlas: A resource of catalytic sites and residues identified in enzymes using structural data
-
C. T. Porter G. J. Bartlett J. M. Thornton The Catalytic Site Atlas: a resource of catalytic sites and residues identified in enzymes using structural data Nucleic Acids Res. 2004 32 D129 D133
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Porter, C.T.1
Bartlett, G.J.2
Thornton, J.M.3
-
16
-
-
0033957834
-
The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
-
A. Bairoch R. Apweiler The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000 Nucleic Acids Res. 2000 28 45 48
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 45-48
-
-
Bairoch, A.1
Apweiler, R.2
-
17
-
-
33947238287
-
The Sorcerer II Global Ocean Sampling expedition: Northwest Atlantic through eastern tropical Pacific
-
D. B. Rusch A. L. Halpern G. Sutton K. B. Heidelberg S. Williamson S. Yooseph D. Wu J. A. Eisen J. M. Hoffman K. Remington K. Beeson B. Tran H. Smith H. Baden-Tillson C. Stewart J. Thorpe J. Freeman C. Andrews-Pfannkoch J. E. Venter K. Li S. Kravitz J. F. Heidelberg T. Utterback Y. H. Rogers L. I. Falcon V. Souza G. Bonilla-Rosso L. E. Eguiarte D. M. Karl S. Sathyendranath T. Platt E. Bermingham V. Gallardo G. Tamayo-Castillo M. R. Ferrari R. L. Strausberg K. Nealson R. Friedman M. Frazier J. C. Venter The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific PLoS Biol. 2007 5 e77
-
(2007)
PLoS Biol.
, vol.5
, pp. 77
-
-
Rusch, D.B.1
Halpern, A.L.2
Sutton, G.3
Heidelberg, K.B.4
Williamson, S.5
Yooseph, S.6
Wu, D.7
Eisen, J.A.8
Hoffman, J.M.9
Remington, K.10
Beeson, K.11
Tran, B.12
Smith, H.13
Baden-Tillson, H.14
Stewart, C.15
Thorpe, J.16
Freeman, J.17
Andrews-Pfannkoch, C.18
Venter, J.E.19
Li, K.20
Kravitz, S.21
Heidelberg, J.F.22
Utterback, T.23
Rogers, Y.H.24
Falcon, L.I.25
Souza, V.26
Bonilla-Rosso, G.27
Eguiarte, L.E.28
Karl, D.M.29
Sathyendranath, S.30
Platt, T.31
Bermingham, E.32
Gallardo, V.33
Tamayo-Castillo, G.34
Ferrari, M.R.35
Strausberg, R.L.36
Nealson, K.37
Friedman, R.38
Frazier, M.39
Venter, J.C.40
more..
-
19
-
-
0035798406
-
Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure
-
J. Gough K. Karplus R. Hughey C. Chothia Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure J. Mol. Biol. 2001 313 903 919
-
(2001)
J. Mol. Biol.
, vol.313
, pp. 903-919
-
-
Gough, J.1
Karplus, K.2
Hughey, R.3
Chothia, C.4
-
20
-
-
78651319979
-
Ongoing and future developments at the Universal Protein Resource
-
The UniProt Consortium Ongoing and future developments at the Universal Protein Resource Nucleic Acids Res. 2011 39 D214 D219
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Uniprot Consortium, T.1
-
21
-
-
26444530167
-
Protein interactions limit the rate of evolution of photosynthetic genes in cyanobacteria
-
T. Shi T. S. Bibby L. Jiang A. J. Irwin P. G. Falkowski Protein interactions limit the rate of evolution of photosynthetic genes in cyanobacteria Mol. Biol. Evol. 2005 22 2179 2189
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 2179-2189
-
-
Shi, T.1
Bibby, T.S.2
Jiang, L.3
Irwin, A.J.4
Falkowski, P.G.5
-
22
-
-
0001202417
-
Evolution of the structure of ferredoxin based on living relics of primitive amino Acid sequences
-
R. V. Eck M. O. Dayhoff Evolution of the structure of ferredoxin based on living relics of primitive amino Acid sequences Science 1966 152 363 366
-
(1966)
Science
, vol.152
, pp. 363-366
-
-
Eck, R.V.1
Dayhoff, M.O.2
-
23
-
-
0034646208
-
Structures of the superoxide reductase from Pyrococcus furiosus in the oxidized and reduced states
-
A. P. Yeh Y. Hu F. E. Jenney, Jr. M. W. Adams D. C. Rees Structures of the superoxide reductase from Pyrococcus furiosus in the oxidized and reduced states Biochemistry 2000 39 2499 2508
-
(2000)
Biochemistry
, vol.39
, pp. 2499-2508
-
-
Yeh, A.P.1
Hu, Y.2
Jenney, Jr.F.E.3
Adams, M.W.4
Rees, D.C.5
-
24
-
-
0030611701
-
Structure of ADP x AIF4(-)-stabilized nitrogenase complex and its implications for signal transduction
-
H. Schindelin C. Kisker J. L. Schlessman J. B. Howard D. C. Rees Structure of ADP x AIF4(-)-stabilized nitrogenase complex and its implications for signal transduction Nature 1997 387 370 376
-
(1997)
Nature
, vol.387
, pp. 370-376
-
-
Schindelin, H.1
Kisker, C.2
Schlessman, J.L.3
Howard, J.B.4
Rees, D.C.5
-
25
-
-
0142106006
-
Nitrogen fixation: The mechanism of the Mo-dependent nitrogenase
-
R. Y. Igarashi L. C. Seefeldt Nitrogen fixation: the mechanism of the Mo-dependent nitrogenase Crit. Rev. Biochem. Mol. Biol. 2003 38 351 384
-
(2003)
Crit. Rev. Biochem. Mol. Biol.
, vol.38
, pp. 351-384
-
-
Igarashi, R.Y.1
Seefeldt, L.C.2
-
26
-
-
0037006991
-
Kinetics and mechanism of superoxide reduction by two-iron superoxide reductase from Desulfovibrio vulgaris
-
J. P. Emerson E. D. Coulter D. E. Cabelli R. S. Phillips D. M. Kurtz, Jr. Kinetics and mechanism of superoxide reduction by two-iron superoxide reductase from Desulfovibrio vulgaris Biochemistry 2002 41 4348 4357
-
(2002)
Biochemistry
, vol.41
, pp. 4348-4357
-
-
Emerson, J.P.1
Coulter, E.D.2
Cabelli, D.E.3
Phillips, R.S.4
Kurtz, Jr.D.M.5
-
27
-
-
0031043109
-
Crystal structure of formate dehydrogenase H: Catalysis involving Mo, molybdopterin, selenocysteine, and an Fe4S4 cluster
-
J. C. Boyington V. N. Gladyshev S. V. Khangulov T. C. Stadtman P. D. Sun Crystal structure of formate dehydrogenase H: catalysis involving Mo, molybdopterin, selenocysteine, and an Fe4S4 cluster Science 1997 275 1305 1308
-
(1997)
Science
, vol.275
, pp. 1305-1308
-
-
Boyington, J.C.1
Gladyshev, V.N.2
Khangulov, S.V.3
Stadtman, T.C.4
Sun, P.D.5
-
28
-
-
0038747011
-
The first direct characterization of a high-valent iron intermediate in the reaction of an alpha-ketoglutarate-dependent dioxygenase: A high-spin FeIV complex in taurine/alpha-ketoglutarate dioxygenase (TauD) from Escherichia coli
-
J. C. Price E. W. Barr B. Tirupati J. M. Bollinger, Jr. C. Krebs The first direct characterization of a high-valent iron intermediate in the reaction of an alpha-ketoglutarate-dependent dioxygenase: a high-spin FeIV complex in taurine/alpha-ketoglutarate dioxygenase (TauD) from Escherichia coli Biochemistry 2003 42 7497 7508
-
(2003)
Biochemistry
, vol.42
, pp. 7497-7508
-
-
Price, J.C.1
Barr, E.W.2
Tirupati, B.3
Bollinger, Jr.J.M.4
Krebs, C.5
-
29
-
-
33846041078
-
The Universal Protein Resource (UniProt)
-
UniProt Consortium The Universal Protein Resource (UniProt) Nucleic Acids Res. 2007 35 D193 D197
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Consortium, U.1
-
30
-
-
33846057724
-
NCBI reference sequences (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins
-
K. D. Pruitt T. Tatusova D. R. Maglott NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins Nucleic Acids Res. 2007 35 D61 D65
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Pruitt, K.D.1
Tatusova, T.2
Maglott, D.R.3
-
31
-
-
0034069495
-
Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium
-
M. Ashburner C. A. Ball J. A. Blake D. Botstein H. Butler J. M. Cherry A. P. Davis K. Dolinski S. S. Dwight J. T. Eppig M. A. Harris D. P. Hill L. Issel-Tarver A. Kasarskis S. Lewis J. C. Matese J. E. Richardson M. Ringwald G. M. Rubin G. Sherlock Gene ontology: tool for the unification of biology. The Gene Ontology Consortium Nat. Genet. 2000 25 25 29
-
(2000)
Nat. Genet.
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
Harris, M.A.11
Hill, D.P.12
Issel-Tarver, L.13
Kasarskis, A.14
Lewis, S.15
Matese, J.C.16
Richardson, J.E.17
Ringwald, M.18
Rubin, G.M.19
Sherlock, G.20
more..
-
32
-
-
0346801873
-
The Gene Ontology (GO) database and informatics resource
-
M. A. Harris J. Clark A. Ireland J. Lomax M. Ashburner R. Foulger K. Eilbeck S. Lewis B. Marshall C. Mungall J. Richter G. M. Rubin J. A. Blake C. Bult M. Dolan H. Drabkin J. T. Eppig D. P. Hill L. Ni M. Ringwald R. Balakrishnan J. M. Cherry K. R. Christie M. C. Costanzo S. S. Dwight S. Engel D. G. Fisk J. E. Hirschman E. L. Hong R. S. Nash A. Sethuraman C. L. Theesfeld D. Botstein K. Dolinski B. Feierbach T. Berardini S. Mundodi S. Y. Rhee R. Apweiler D. Barrell E. Camon E. Dimmer V. Lee R. Chisholm P. Gaudet W. Kibbe R. Kishore E. M. Schwarz P. Sternberg M. Gwinn L. Hannick J. Wortman M. Berriman V. Wood N. de la Cruz P. Tonellato P. Jaiswal T. Seigfried R. White The Gene Ontology (GO) database and informatics resource Nucleic Acids Res. 2004 32 D258 D261
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Harris, M.A.1
Clark, J.2
Ireland, A.3
Lomax, J.4
Ashburner, M.5
Foulger, R.6
Eilbeck, K.7
Lewis, S.8
Marshall, B.9
Mungall, C.10
Richter, J.11
Rubin, G.M.12
Blake, J.A.13
Bult, C.14
Dolan, M.15
Drabkin, H.16
Eppig, J.T.17
Hill, D.P.18
Ni, L.19
Ringwald, M.20
Balakrishnan, R.21
Cherry, J.M.22
Christie, K.R.23
Costanzo, M.C.24
Dwight, S.S.25
Engel, S.26
Fisk, D.G.27
Hirschman, J.E.28
Hong, E.L.29
Nash, R.S.30
Sethuraman, A.31
Theesfeld, C.L.32
Botstein, D.33
Dolinski, K.34
Feierbach, B.35
Berardini, T.36
Mundodi, S.37
Rhee, S.Y.38
Apweiler, R.39
Barrell, D.40
Camon, E.41
Dimmer, E.42
Lee, V.43
Chisholm, R.44
Gaudet, P.45
Kibbe, W.46
Kishore, R.47
Schwarz, E.M.48
Sternberg, P.49
Gwinn, M.50
Hannick, L.51
Wortman, J.52
Berriman, M.53
Wood, V.54
De La Cruz, N.55
Tonellato, P.56
Jaiswal, P.57
Seigfried, T.58
White, R.59
more..
-
33
-
-
0033954256
-
The Protein Data Bank
-
H. M. Berman J. Westbrook Z. Feng G. Gilliland T. N. Bhat H. Weissig I. N. Shindyalov P. E. Bourne The Protein Data Bank Nucleic Acids Res. 2000 28 235 242
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
36
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
J. D. Thompson D. G. Higgins T. J. Gibson CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res. 1994 22 4673 4680
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
37
-
-
0019887799
-
Identification of common molecular subsequences
-
T. F. Smith M. S. Waterman Identification of common molecular subsequences J. Mol. Biol. 1981 147 195 197
-
(1981)
J. Mol. Biol.
, vol.147
, pp. 195-197
-
-
Smith, T.F.1
Waterman, M.S.2
|