Simulation of environmental and genotypic variations of final leaf number and anthesis date for wheat

European Journal of Agronomy

Volumn 42, Issue , 2012, Pages 22-33

  He, Jianqiang ^a,b,g   Le Gouis, Jacques ^a,b   Stratonovitch, Pierre ^c   Allard, Vincent ^a,b   Gaju, Oorbessy ^d   Heumez, Emmanuel ^e   Orford, Simon ^f   Griffiths, Simon ^f   Snape, John W ^f   Foulkes, M John ^d   Semenov, Mikhail A ^c   Martre, Pierre ^a,b  

^a Diversity and Ecophysiology of Cereals   (France)

^b UNIVERSITÉ CLERMONT AUVERGNE   (France)

^c ROTHAMSTED RESEARCH   (United Kingdom)

^d UNIVERSITY OF NOTTINGHAM   (United Kingdom)

^e UMR 1091 Abiotic Stress and Plant Development   (France)

^f NORWICH RESEARCH PARK   (United Kingdom)

^g NORTHWEST A F UNIVERSITY   (China)

Author keywords

Anthesis date; Genetic algorithm; Parameter estimation; Phenology; Phyllochron; Wheat modeling

Indexed keywords

CULTIVAR; ECOPHYSIOLOGY; EMERGENCE; FIELD; FITNESS; FLOWERING; GENETIC ALGORITHM; GENOTYPE-ENVIRONMENT INTERACTION; GROWING SEASON; LEAF; NONLINEARITY; NUMERICAL MODEL; PARAMETERIZATION; PHENOLOGY; WHEAT;

FRANCE;

TRITICUM AESTIVUM;

EID: 84863630362     PISSN: 11610301     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.eja.2011.11.002     Document Type: Article

References (89)

1. Ahn B.O., Miyoshi K., Itoh J.I., Nagato Y., Kurata N. A genetic and physical map of the region containing PLASTOCHRON1, a heterochronic gene, in rice (Oryza sativa L.). Theor. Appl. Genet. 2002, 105:654-659.
2. Allison J.C.S., Daynard T.B. Effect of photoperiod on development and number of spikelets of a temperate and some low-latitude wheats. Ann. Appl. Biol. 1976, 83:93-102.
3. Barth N.H. Oceanographic experiment design II: genetic algorithms. J. Atmos. Oceanic Technol. 1992, 9:434-443.
4. Beales J., Turner A., Griffiths S., Snape J., Laurie D. A Pseudo-Response Regulator is misexpressed in the photoperiod insensitive Ppd-D1a mutant of wheat (Triticum aestivum L.). Theor. Appl. Genet. 2007, 115:721-733.
5. Beven K., Binley A. The future of distributed models: model calibration and uncertainty prediction. Hydrol. Processes 1992, 6:279-298.
6. Bhatia V.S., Singh P., Wani S.P., Chauhan G.S., Rao A.V.R.K., Mishra A.K., Srinivas K. Analysis of potential yields and yield gaps of rainfed soybean in India using CROPGRO-Soybean model. Agric. Forest Meteorol. 2008, 148:1252-1265.
7. Boone M.Y.L., Rickman R.W., Whisler F.D. Leaf appearance rates of two winter wheat cultivars under high carbon dioxide conditions. Agron. J. 1990, 82:718-724.
8. Borràs G., Romagosa I., van Eeuwijk F., Slafer G.A. Genetic variability in duration of pre-heading phases and relationships with leaf appearance and tillering dynamics in a barley population. Field Crops Res. 2009, 113:95-104.
9. Borràs-Gelonch G., Slafer G.A., Casas A.M., van Eeuwijk F., Romagosa I. Genetic control of pre-heading phases and other traits related to development in a double-haploid barley (Hordeum vulgare L.) population. Field Crops Res. 2010, 119:36-47.
10. Bos H.J., Neuteboom J.H. Morphological analysis of leaf and tiller number dynamics of wheat (Triticum aestivum L.): responses to temperature and light intensity. Ann. Bot. 1998, 81:131-139.
11. Brooking I.R. Temperature response of vernalization in wheat: a developmental analysis. Ann. Bot. 1996, 78:507-512.
12. Brooking I.R., Jamieson P.D. Temperature and photoperiod response of vernalization in near-isogenic lines of wheat. Field Crops Res. 2002, 79:21-38.
13. Brooking I.R., Jamieson P.D., Porter J.R. The influence of daylength on final leaf number in spring wheat. Field Crops Res. 1995, 41:155-165.
14. Crossa J., Burgueno J., Dreisigacker S., Vargas M., Herrera-Foessel S.A., Lillemo M., Singh R.P., Trethowan R., Warburton M., Franco J., Reynolds M., Crouch J.H., Ortiz R. Association analysis of historical bread wheat germplasm using additive genetic covariance of relatives and population structure. Genetics 2007, 177:1889-1913.
15. Dai C., Yao M., Xie Z., Chen C., Liu J. Parameter optimization for growth model of greenhouse crop using genetic algorithms. Appl. Soft Comput. 2009, 9:13-19.
16. Dennis J.E., Schnabel R.B. Numerical Methods for Unconstrained Optimization and Nonlinear Equations 1983, Prentice-Hall, New Jersey.
17. Dofing S.M. Inheritance of phyllochron in barley. Crop Sci. 1999, 39:334-337.
18. Dong Y., Kamiunten H., Ogawa T., Tsuzuki E., Terao H., Lin D., Matsuo M. Mapping of QTLs for leaf developmental behavior in rice (Oryza sativa L.). Euphytica 2004, 138:169-175.
19. Falster, D.S., Warton, D.I., Wright I.J., 2006. SMATR: Standardised major axis tests and routines, ver 2.0, (last accessed 14/11/2011). http://www.bio.mq.edu.au/ecology/SMATR/.
20. Fazal M.A., Imaizumi M., Ishida S., Kawachi T., Tsuchihara T. Estimating groundwater recharge using the SMAR conceptual model calibrated by genetic algorithm. J. Hydrol. 2005, 303:56-78.
21. Fu D., Szucs P., Yan L., Helguera M., Skinner J.S., von Zitzewitz J., Hayes P.M., Dubcovsky J. Large deletions within the first intron in VRN-1 are associated with spring growth habit in barley and wheat. Mol. Genet. Genomics 2005, 273:54-65.
22. Gaju O., Allard V., Martre P., Snape J.W., Heumez E., LeGouis J., Moreau D., Bogard M., Griffiths S., Orford S., Hubbart S., Foulkes M.J. Identification of traits to improve the nitrogen-use efficiency of wheat genotypes. Field Crops Res. 2011, 123:139-152.
23. Gen M., Cheng R. Genetic Algorithms and Engineering Optimization 2000, Wiley, New York.
24. Goldringer I., Prouin C., Rousset M., Galic N., Bonnin I. Rapid differentiation of experimental populations of wheat for heading time in response to local climatic conditions. Ann. Bot. 2006, 98:805-817.
25. González F.G., Slafer G.A., Miralles D.J. Vernalization and photoperiod responses in wheat pre-flowering reproductive phases. Field Crops Res. 2002, 74:183-195.
26. Hanocq E., Laperche A., Jaminon O., Lainé A., Le Gouis J. Most significant genome regions involved in the control of earliness traits in bread wheat, as revealed by QTL meta-analysis. Theor. Appl. Genet. 2007, 114:569-584.
27. Hanocq E., Niarquin M., Heumez E., Rousset M., Le Gouis J. Detection and mapping of QTL for earliness components in a bread wheat recombinant inbred lines population. Theor. Appl. Genet. 2004, 110:106-115.
28. Haun J.R. Visual quantification of wheat development. Agron. J. 1973, 65:116-119.
29. Hay R.K.M., Ellis R.P. The control of flowering in wheat and barley: what recent advances in molecular genetics can reveal. Ann. Bot. 1998, 82:541-554.
30. Hay R.K.M., Kirby E.J.M. Convergence and synchrony-a review of the coordination of development in wheat. Aust. J. Agric. Res. 1991, 42:661-700.
31. Holland J. Adaption in Natural and Artificial Systems 1992, University of Michigan Press/MIT Press, Ann Arbor, MI/Cambridge.
32. Hu B., Tang G., Ma J.W., Yang H.Z. Parametric inversion of viscoelastic media from VSP data using a genetic algorithms. Appl. Geophys. 2007, 4:194-200.
33. Ingber L. Simulated annealing: practice versus theory. Math. Comput. Model. 1993, 18:29-57.
34. Ishag H.M., Mohamed B.A., Ishag K.H.M. Leaf development of spring wheat cultivars in an irrigated heat-stressed environment. Field Crops Res. 1998, 58:167-175.
35. Iwaki K., Haruna S., Niwa T., Kato K. Adaptation and ecological differentiation in wheat with special reference to geographical variation of growth habit and Vrn genotype. Plant Breed. 2001, 120:107-114.
36. Jamieson P., Brooking I., Zyskowski R., Munro C. The vexatious problem of the variation of the phyllochron in wheat. Field Crops Res. 2008, 108:163-168.
37. Jamieson P.D., Brooking I.R., Porter J.R., Wilson D.R. Prediction of leaf appearance in wheat: a question of temperature. Field Crops Res. 1995, 41:35-44.
38. Jamieson P.D., Brooking I.R., Semenov M.A., McMaster G.S., White J.W., Porter J.R. Reconciling alternative models of phenological development in winter wheat. Field Crops Res. 2007, 103:36-41.
39. Jamieson P.D., Brooking I.R., Semenov M.A., Porter J.R. Making sense of wheat development: a critique of methodology. Field Crops Res. 1998, 55:117-127.
40. Jamieson P.D., Munro C.A. A simple method for the phenological evaluation of new cereal cultivars. Proc. Agron. Soc. N. Z. 1999, 29:63-68.
41. Jamieson P.D., Munro C.A. The calibration of a model for daylength responses in spring wheat for large numbers of cultivars. Proc. Agron. Soc. N. Z. 2000, 30:25-29.
42. Jamieson P.D., Semenov M.A., Brooking I.R., Francis G.S. Sirius: a mechanistic model of wheat response to environmental variation. Eur. J. Agron. 1998, 8:161-179.
43. Jones P.N., Carberry P.S. A technique to develop and validate simulation models. Agric. Syst. 1994, 46:427-442.
44. Katare S., Bhan A., Caruthers J.M., Delgass W.N., Venkatasubramanian V. A hybrid genetic algorithm for efficient parameter estimation of large kinetic models. Comput. Chem. Eng. 2004, 28:2569-2581.
45. Kirby E.J.M. Co-ordination of leaf emergence and leaf and spikelet primordium initiation in wheat. Field Crops Res. 1990, 25:253-264.
46. Kirby E.J.M., Appleyard M., Fellowes G. Effect of sowing date and variety on main shoot leaf emergence and number of leaves of barley and wheat. Agronomie 1985, 5:117-126.
47. Kirby E.J.M., Appleyard M., Fellowes G. Leaf emergence and tillering in barley and wheat. Agronomie 1985, 5:193-200.
48. Law C.N., Worland A.J. Genetic analysis of some flowering time and adaptive traits in wheat. New Phytol. 1997, 137:19-28.
49. Letort V., Mahe P., Cournede P.-H., de Reffye P., Courtois B. Quantitative genetics and functional-structural plant growth models: simulation of quantitative trait loci detection for model parameters and application to potential yield optimization. Ann. Bot. 2008, 101:1243-1254.
50. Levy J., Peterson M.L. Responses of spring wheats to vernalization and photoperiod. Crop Sci. 1972, 12:487-490.
51. Makowski D., Hillier J., Wallach D., Andrieu B., Jeuffroy M.H. Paramter estimation for crop models. Working with Dynamic Crop Models 2006, 101-149. Elsevier, Amsterdam. D. Wallach, D. Makowski, J.W. Jones (Eds.).
52. Marseguerra M., Zio E., Podofillini L. Model parameters estimation and sensitivity by genetic algorithms. Ann. Nucl. Energy 2003, 30:1437-1456.
53. Martre P., Jamieson P.D., Semenov M.A., Zyskowski R.F., Porter J.R., Triboi E. Modelling protein content and composition in relation to crop nitrogen dynamics for wheat. Eur. J. Agron. 2006, 25:138-154.
54. Martre P., Jamieson P.D., Stratonovitch P., Allard V., Semenov M.A. A process-based simulation model of biomass and nitrogen accumulation and vertical distribution within the canopy for wheat. Paper Presented at the International Symposium on Crop Modeling and Decision Support 2008.
55. Martre P., Semenov M.A., Jamieson P.D. Simulation analysis of physiological traits to improve yield, nitrogen use efficiency and grain protein concentration in wheat. Scale and Complexity in Plant Systems Research, Gene-Plant-Crop Relations 2007, 181-201. Springer, Amsterdam. J.H.J. Spiertz, P.C. Struik, H.H. Van Laar (Eds.).
56. McMaster G.S. Phytomers, phyllochrons, phenology and temperate cereal development. J. Agric. Sci. 2005, 143:137-150.
57. McMaster G.S., White J.W., Hunt L.A., Jamieson P.D., Dhillon S.S., Ortiz-Monasterio J.I. Simulating the influence of vernalization, photoperiod and optimum temperature on wheat developmental rates. Ann. Bot. 2008, 102:561-569.
58. McMaster G.S., Wilhelm W.W., Palic D.B., Porter J.R., Jamieson P.D. Spring wheat leaf appearance and temperature: extending the paradigm?. Ann. Bot. 2003, 91:697-705.
59. Mercau J.L., Dardanelli J.L., Collino D.J., Andriani J.M., Irigoyen A., Satorre E.H. Predicting on-farm soybean yields in the pampas using CROPGRO-soybean. Field Crops Res. 2007, 100:200-209.
60. Miyamoto N., Goto Y., Matsui M., Ukai Y., Morita M., Nemoto K. Quantitative trait loci for phyllochron and tillering in rice. Theor. Appl. Genet. 2004, 109:700-706.
61. Morita M., Tang D.-Q., Miyamoto N., Goto Y., Ukai Y., Nemoto K. Quantitative trait loci for rice phyllochron in Lemont×IR36 cross. Plant Prod. Sci. 2005, 8:199-202.
62. Mossad M.G., Ortiz-Ferrara G., Mahalakshmi V., Fischer R.A. Phyllochron response to vernalization and photoperiod in sprind wheat. Crop Sci. 1995, 35:168-171.
63. Nelder J.A., Mead R. A simplex method for function minimization. Comput. J. 1965, 7:308-313.
64. Ooka R., Komamura K. Optimal design method for building energy systems using genetic algorithms. Build. Environ. 2009, 44:1538-1544.
65. Park T.-Y., Froment G.F. A hybrid genetic algorithm for the estimation of parameters in detailed kinetic models. Comput. Chem. Eng. 1998, 22:S103-S110.
66. Poethig R.S. Heterochronic mutations affecting shoot development in maize. Genetics 1988, 119:959-973.
67. Porter J.R., Semenov M.A. Crop responses to climatic variation. Philos. Trans. R. Soc. Lond. B: Biol. Sci. 2005, 360:2021-2035.
68. R Development Core Team A Language and Environment for Statistical Computing 2007, R Foundation for Statistical Computing, Vienna, Austria.
69. Rahman M.S. Effect of photoperiod and vernalization on the rate of development and spikelet number per ear in 30 varieties of wheat. J. Aust. Inst. Agric. Sci. 1980, 46:68-70.
70. Rahman M.S., Wilson J.H. Determination of spikelet number in wheat. I. Effect of varying photoperiod on ear development. Aust. J. Agric. Res. 1977, 28:565-574.
71. Rebetzke G.J., Richards R.A. Genetic improvement of early vigour in wheat. Aust. J. Agric. Res. 1999, 50:291-301.
72. Ritchie J.T. Wheat phasic development. Plant and Soil Systems. Agronomy Monograph no. 31 1991, 31-54. American Society of Agronomy Crop Science Society of Amercia, Soil Science Society of America, Madison. J.T. Ritchie, R.J. Hanks (Eds.).
73. Robertson M.J., Brooking I.R., Ritchie J.T. Temperature response of vernalization in wheat: modelling the effect on the final number of mainstem leaves. Ann. Bot. 1996, 78:371-381.
74. Sellers W.D. Physical Climatology 1965, University of Chicago Press, Chicago, USA.
75. Slafer G.A., Rawson H.M. Intrinsic earliness and basic development rate assessed for their response to temperature in wheat. Euphytica 1995, 83:175-183.
76. Slafer G.A., Rawson H.M. Photoperiod×temperature interactions in contrasting wheat genotypes: time to heading and final leaf number. Field Crops Res. 1995, 44:73-83.
77. Slafer G.A., Rawson H.M. Rates and cardinal temperatures for processes of development in wheat: effects of temperature and thermal amplitude. Aust. J. Plant Physiol. 1995, 22:913-926.
78. Slafer G.A., Rawson H.M. Phyllochron in wheat as affected by photoperiod under two temperature regimes. Aust. J. Plant Physiol. 1997, 24:151-158.
79. Snape J.W., Butterworth K., Whitechurch E., Worland A.J. Waiting for fine times: genetics of flowering time in wheat. Euphytica 2001, 119:185-190.
80. Vinocur M.G., Ritchie J.T. Maize leaf development biases caused by air-apex temperature differences. Agron. J. 2001, 93:767-772.
81. Wallach D. Evaluating crop models. Working with Dynamic Crop Models 2006, 11-53. Elsevier, Amsterdam. D. Wallach, D. Makowski, J.W. Jones (Eds.).
82. Weir A.H., Bragg P.L., Porter J.R., Rayner J.H. A winter wheat crop simulation model without water or nutrient limitations. J. Agric. Sci. 1984, 102:371-382.
83. White J.W., Herndl M., Hunt L.A., Payne T.S., Hoogenboom G. Simulation-based analysis of effects of Vrn and Ppd loci on flowering in wheat. Crop Sci. 2008, 48:678-687.
84. Wilczek A.M., Roe J.L., Knapp M.C., Cooper M.D., Lopez-Gallego C., Martin L.J., Muir C.D., Sim S., Walker A., Anderson J., Egan J.F., Moyers B.T., Petipas R., Giakountis A., Charbit E., Coupland G., Welch S.M., Schmitt J. Effects of genetic perturbation on seasonal life history plasticity. Science 2009, 323:930-934.
85. Yan L., Helguera M., Kato K., Fukuyama S., Sherman J., Dubcovsky J. Allelic variation at the VRN-1 promoter region in polyploid wheat. Theor. Appl. Genet. 2004, 109:1677-1686.
86. Yin X., Struik P.C., Tang J., Qi C., Liu T. Model analysis of flowering phenology in recombinant inbred lines of barley. J. Exp. Bot. 2005, 56:959-965.
87. Yin X., Struik P.C., van Eeuwijk F.A., Stam P., Tang J. QTL analysis and QTL-based prediction of flowering phenology in recombinant inbred lines of barley. J. Exp. Bot. 2005, 56:967-976.
88. Zhang L.-Y., Liu D.-C., Guo X.-L., Yang W.-L., Sun J.-Z., Wang D.-W., Zhang A. Genomic distribution of quantitative trait loci for yield and yield-related traits in common wheat. J. Integr. Plant Biol. 2010, 52:996-1007.
89. Zhang X.K., Xiao Y.G., Zhang Y., Xia X.C., Dubcovsky J., He Z.H. Allelic variation at the vernalization genes Vrn-A1, Vrn-B1, Vrn-D1, and Vrn-B3 in Chinese wheat cultivars and their association with growth habit. Crop Sci. 2008, 48:458-470.