Identification of co-occurring transcription factor binding sites from DNA sequence using clustered position weight matrices

Nucleic Acids Research

Volumn 40, Issue 5, 2012, Pages

  Oh, Young Min ^a   Kim, Jong Kyoung ^a,b   Choi, Seungjin ^a   Yoo, Joo Yeon ^a  

^a Pohang University of Science and Technology (POSTECH)   (South Korea)

^b WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

MYC PROTEIN; PROTEIN C JUN; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR E2F;

ARTICLE; BINDING SITE; CHROMATIN IMMUNOPRECIPITATION; CONTROLLED STUDY; DNA SEQUENCE; GENE LOCUS; INTERMETHOD COMPARISON; PREDICTION; PRIORITY JOURNAL; PROTEIN MOTIF; RECEIVER OPERATING CHARACTERISTIC;

BASE SEQUENCE; BINDING SITES; CONSERVED SEQUENCE; E2F TRANSCRIPTION FACTORS; NUCLEOTIDE MOTIFS; POSITION-SPECIFIC SCORING MATRICES; PROTO-ONCOGENE PROTEINS C-JUN; REGULATORY ELEMENTS, TRANSCRIPTIONAL; SEQUENCE ANALYSIS, DNA; SOFTWARE; TRANSCRIPTION FACTORS;

EID: 84863378672     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkr1252     Document Type: Article

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