-
1
-
-
73649107884
-
Ganoderma lucidum : A potent pharmacological macrofungus
-
Sanodiya, B. S., Th akur, G. S., Baghel, R. K., Prasad, G. B. & Bisen, P. S. Ganoderma lucidum : a potent pharmacological macrofungus. Curr. Pharm. Biotechnol. 1 0, 717-742 (2009).
-
(2009)
Curr. Pharm. Biotechnol.
, vol.10
, pp. 717-742
-
-
Sanodiya, B.S.1
Thakur, G.S.2
Baghel, R.K.3
Prasad, G.B.4
Bisen, P.S.5
-
2
-
-
34548598182
-
Ganoderma lucidum and its pharmaceutically active compounds
-
DOI 10.1016/S1387-2656(07)13010-6, PII S1387265607130106
-
Boh, B., Berovic, M., Zhang, J. & Zhi-Bin, L. Ganoderma lucidum and its pharmaceutically active compounds. B iotechnol. Annu. Rev. 1 3, 265-301 (2007). (Pubitemid 47387127)
-
(2007)
Biotechnology Annual Review
, vol.13
, pp. 265-301
-
-
Boh, B.1
Berovic, M.2
Zhang, J.3
Zhi-Bin, L.4
-
3
-
-
0141720419
-
Natural products of the medicinal fungus Ganoderma lucidum : Occurrence, biological activities, and pharmacological functions
-
Shiao, M. S. Natural products of the medicinal fungus Ganoderma lucidum : occurrence, biological activities, and pharmacological functions. Chem. Rec. 3, 172-180 (2003).
-
(2003)
Chem. Rec.
, vol.3
, pp. 172-180
-
-
Shiao, M.S.1
-
4
-
-
0034795090
-
Purification and characterization of laccase isozymes from the white-rot basidiomycete Ganoderma lucidum
-
DOI 10.1007/s002530100727
-
Ko, E. M., Leem, Y. E. & Choi, H. T. Purifi cation and characterization of laccase isozymes from the white-rot basidiomycete Ganoderma lucidum. Appl. Microbio. Biotechnol. 57, 98-102 (2001). (Pubitemid 32938357)
-
(2001)
Applied Microbiology and Biotechnology
, vol.57
, Issue.1-2
, pp. 98-102
-
-
Ko, E.-M.1
Leem, Y.-E.2
Choi, H.T.3
-
5
-
-
33846861493
-
Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88
-
DOI 10.1038/nbt1282, PII NBT1282
-
Pel, H. J. et al. Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88. Nat. Biotechnol. 2 5, 221-231 (2007). (Pubitemid 46227122)
-
(2007)
Nature Biotechnology
, vol.25
, Issue.2
, pp. 221-231
-
-
Pel, H.J.1
De Winde, J.H.2
Archer, D.B.3
Dyer, P.S.4
Hofmann, G.5
Schaap, P.J.6
Turner, G.7
De Vries, R.P.8
Albang, R.9
Albermann, K.10
Andersen, M.R.11
Bendtsen, J.D.12
Benen, J.A.E.13
Van Den Berg, M.14
Breestraat, S.15
Caddick, M.X.16
Contreras, R.17
Cornell, M.18
Coutinho, P.M.19
Danchin, E.G.J.20
Debets, A.J.M.21
Dekker, P.22
Van Dijck, P.W.M.23
Van Dijk, A.24
Dijkhuizen, L.25
Driessen, A.J.M.26
D'Enfert, C.27
Geysens, S.28
Goosen, C.29
Groot, G.S.P.30
De Groot, P.W.J.31
Guillemette, T.32
Henrissat, B.33
Herweijer, M.34
Van Den Hombergh, J.P.T.W.35
Van Den Hondel, C.A.M.J.J.36
Van Der Heijden, R.T.J.M.37
Van Der Kaaij, R.M.38
Klis, F.M.39
Kools, H.J.40
Kubicek, C.P.41
Van Kuyk, P.A.42
Lauber, J.43
Lu, X.44
Van Der Maarel, M.J.E.C.45
Meulenberg, R.46
Menke, H.47
Mortimer, M.A.48
Nielsen, J.49
Oliver, S.G.50
Olsthoorn, M.51
Pal, K.52
Van Peij, N.N.M.E.53
Ram, A.F.J.54
Rinas, U.55
Roubos, J.A.56
Sagt, C.M.J.57
Schmoll, M.58
Sun, J.59
Ussery, D.60
Varga, J.61
Vervecken, W.62
Van De Vondervoort, P.J.J.63
Wedler, H.64
Wosten, H.A.B.65
Zeng, A.-P.66
Van Ooyen, A.J.J.67
Visser, J.68
Stam, H.69
more..
-
6
-
-
33947156343
-
Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast P ichia stipitis
-
Jeff ries, T. W. et al. Genome sequence of the lignocellulose- bioconverting and xylose-fermenting yeast P ichia stipitis. Nat. Biotechnol. 2 5, 319-326 (2007).
-
(2007)
Nat. Biotechnol.
, vol.25
, pp. 319-326
-
-
Jeff Ries, T.W.1
-
7
-
-
67149116767
-
Genome sequence of the recombinant protein production host P ichia pastoris
-
De Schutter, K. et al. Genome sequence of the recombinant protein production host P ichia pastoris. N at. Biotechnol. 2 7, 561-566 (2009).
-
(2009)
N At. Biotechnol.
, vol.27
, pp. 561-566
-
-
De Schutter, K.1
-
8
-
-
33646856440
-
CAFE: A computational tool for the study of gene family evolution
-
DOI 10.1093/bioinformatics/btl097
-
De Bie, T., Cristianini, N., Demuth, J. P. & Hahn, M. W. CAFE: a computational tool for the study of gene family evolution. B ioinformatics 2 2, 1269-1271 (2006). (Pubitemid 43779021)
-
(2006)
Bioinformatics
, vol.22
, Issue.10
, pp. 1269-1271
-
-
De Bie, T.1
Cristianini, N.2
Demuth, J.P.3
Hahn, M.W.4
-
9
-
-
79953163565
-
Insight into functional diversity of cytochrome P450 in the white-rot basidiomycete Phanerochaete chrysosporium : Involvement of versatile monooxygenase
-
Hirosue, S. et al. Insight into functional diversity of cytochrome P450 in the white-rot basidiomycete Phanerochaete chrysosporium : involvement of versatile monooxygenase. Biochem. Biophys. Res. Commun. 407, 118-123 (2011).
-
(2011)
Biochem. Biophys. Res. Commun.
, vol.407
, pp. 118-123
-
-
Hirosue, S.1
-
10
-
-
53849119555
-
Ins and outs of major facilitator superfamily antiporters
-
Law, C. J., Maloney, P. C. & Wang, D. N. Ins and outs of major facilitator superfamily antiporters. A nnu. Rev. Microbiol. 6 2, 289-305 (2008).
-
(2008)
A Nnu. Rev. Microbiol.
, vol.62
, pp. 289-305
-
-
Law, C.J.1
Maloney, P.C.2
Wang, D.N.3
-
11
-
-
2542601548
-
Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78
-
DOI 10.1038/nbt967
-
Martinez, D. et al. Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78. N at. Biotechnol. 2 2, 695-700 (2004). (Pubitemid 38702825)
-
(2004)
Nature Biotechnology
, vol.22
, Issue.6
, pp. 695-700
-
-
Martinez, D.1
Larrondo, L.F.2
Putnam, N.3
Sollewijn Gelpke, M.D.4
Huang, K.5
Chapman, J.6
Helfenbein, K.G.7
Ramaiya, P.8
Detter, J.C.9
Larimer, F.10
Coutinho, P.M.11
Henrissat, B.12
Berka, R.13
Cullen, D.14
Rokhsar, D.15
-
12
-
-
77956685978
-
Genome sequence of the model mushroom Schizophyllum commune N at
-
Ohm, R. A. et al. Genome sequence of the model mushroom Schizophyllum commune. N at. Biotechnol. 28, 957-963 (2010).
-
(2010)
Biotechnol.
, vol.28
, pp. 957-963
-
-
Ohm, R.A.1
-
13
-
-
78649328904
-
Current progress in the study on biosynthesis and regulation of ganoderic acids
-
Shi, L., Ren, A., Mu, D. & Zhao, M. Current progress in the study on biosynthesis and regulation of ganoderic acids. Appl. Microbiol. Biotechnol. 8 8, 1243-1251 (2010).
-
(2010)
Appl. Microbiol. Biotechnol.
, vol.88
, pp. 1243-1251
-
-
Shi, L.1
Ren, A.2
Mu, D.3
Zhao, M.4
-
14
-
-
3242670779
-
Biosynthesis and accumulation of sterols
-
DOI 10.1146/annurev.arplant.55.031903.141616
-
Benveniste, P. Biosynthesis and accumulation of sterols. A nnu. Rev. Plant Biol. 55, 429-457 (2004). (Pubitemid 38940939)
-
(2004)
Annual Review of Plant Biology
, vol.55
, pp. 429-457
-
-
Benveniste, P.1
-
15
-
-
84861905310
-
Molecular identifi cation and functional characterization of cytochrome P450 monooxygenases from the brown-rot basidiomycete Postia placenta
-
Ide, M., Ichinose, H. & Wariishi, H. Molecular identifi cation and functional characterization of cytochrome P450 monooxygenases from the brown-rot basidiomycete Postia placenta. A rch. Microbiol. 194, 243-253 (2012).
-
(2012)
A Rch. Microbiol.
, vol.194
, pp. 243-253
-
-
Ide, M.1
Ichinose, H.2
Wariishi, H.3
-
16
-
-
24944557992
-
Regulation of secondary metabolism in filamentous fungi
-
DOI 10.1146/annurev.phyto.43.040204.140214
-
Yu, J. H. & Keller, N. Regulation of secondary metabolism in fi lamentous fungi. Annu. Rev. Phytopathol. 4 3, 437-458 (2005). (Pubitemid 41318879)
-
(2005)
Annual Review of Phytopathology
, vol.43
, pp. 437-458
-
-
Yu, J.-H.1
Keller, N.2
-
17
-
-
78751493724
-
Ganoderma lucidum polysaccharides: Immunomodulation and potential anti-tumor activities
-
Xu, Z., Chen, X., Zhong, Z., Chen, L. & Wang, Y. Ganoderma lucidum polysaccharides: immunomodulation and potential anti-tumor activities. Am. J. Chin. Med. 3 9, 15-27 (2011).
-
(2011)
Am. J. Chin. Med.
, vol.39
, pp. 15-27
-
-
Xu, Z.1
Chen, X.2
Zhong, Z.3
Chen, L.4
Wang, Y.5
-
18
-
-
0035668391
-
Fungal beta(1,3)-D-glucan synthesis
-
Douglas, C. M. Fungal beta(1,3)-D-glucan synthesis. Med. Mycol. 3 9, 55-66 (2001).
-
(2001)
Med. Mycol.
, vol.39
, pp. 55-66
-
-
Douglas, C.M.1
-
19
-
-
0033953950
-
1,6-glucan synthesis in saccharomyces cerevisiae
-
Shahinian, S. & Bussey, H. -1,6-Glucan synthesis in Saccharomyces cerevisiae. Mol. Microbiol. 35, 477-489 (2000).
-
(2000)
Mol. Microbiol.
, vol.35
, pp. 477-489
-
-
Shahinian, S.1
Bussey, H.2
-
20
-
-
0024570087
-
Isolation and characterization of a new immunomodulatory protein, Ling Zhi-8 (LZ-8), from Ganoderma lucidium
-
Kino, K. et al. Isolation and characterization of a new immunomodulatory protein, ling zhi-8 (LZ-8), from G anoderma lucidium. J. Biol. Chem. 2 64, 472-478 (1989). (Pubitemid 19027628)
-
(1989)
Journal of Biological Chemistry
, vol.264
, Issue.1
, pp. 472-478
-
-
Kino, K.1
Yamashita, A.2
Yamaoka, K.3
Watanabe, J.4
Tanaka, S.5
Ko, K.6
Shimizu, K.7
Tsunoo, H.8
-
21
-
-
0024962529
-
Complete amino acid sequence of an immunomodulatory protein, ling zhi-8 (LZ-8)
-
Tanaka, S. et al. Complete amino acid sequence of an immunomodulatory protein, ling zhi-8 (LZ-8). J. Biol. Chem. 264, 16372-16377 (1989).
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 16372-16377
-
-
Tanaka, S.1
-
22
-
-
81855206545
-
Ling Zhi-8 mediates p53-dependent growth arrest of lung cancer cells proliferation via the ribosomal protein S7-MDM2-p53 pathway
-
Wu, C. et al. Ling Zhi-8 mediates p53-dependent growth arrest of lung cancer cells proliferation via the ribosomal protein S7-MDM2-p53 pathway. Carcinogenesis 3 2, 1890-1896 (2011).
-
(2011)
Carcinogenesis
, vol.32
, pp. 1890-1896
-
-
Wu, C.1
-
23
-
-
70349184084
-
An immunomodulatory protein, Ling Zhi-8, induced activation and maturation of human monocyte-derived dendritic cells by the NF-B and MAPK pathways
-
Lin, Y. et al. An immunomodulatory protein, Ling Zhi-8, induced activation and maturation of human monocyte-derived dendritic cells by the NF-B and MAPK pathways. J. Leukoc. Biol. 86, 877-889 (2009).
-
(2009)
J. Leukoc. Biol.
, vol.86
, pp. 877-889
-
-
Lin, Y.1
-
24
-
-
0025685639
-
An immunomodulating protein, Ling Zhi-8 (LZ-8) prevents insulitis in non-obese diabetic mice
-
Kino, K. et al. An immunomodulating protein, Ling Zhi-8 (LZ-8) prevents insulitis in non-obese diabetic mice. Diabetologia 3 3, 713-718 (1990).
-
(1990)
Diabetologia
, vol.33
, pp. 713-718
-
-
Kino, K.1
-
25
-
-
79953251042
-
The family of terpene synthases in plants: A mid-size family of genes for specialized metabolism that is highly diversifi ed throughout the kingdom
-
Chen, F., Th oll, D., Bohlmann, J. & Pichersky, E. Th e family of terpene synthases in plants: a mid-size family of genes for specialized metabolism that is highly diversifi ed throughout the kingdom. Plant J. 6 6, 212-229 (2011).
-
(2011)
Plant J.
, vol.66
, pp. 212-229
-
-
Chen, F.1
Th Oll, D.2
Bohlmann, J.3
Pichersky, E.4
-
26
-
-
65949116381
-
Diversity of sesquiterpene synthases in the basidiomycete Coprinus cinereus
-
Agger, S., Lopez-Gallego, F. & Schmidt-Dannert, C. Diversity of sesquiterpene synthases in the basidiomycete Coprinus cinereus. M ol. Microbiol. 7 2, 1181-1195 (2009).
-
(2009)
M Ol. Microbiol.
, vol.72
, pp. 1181-1195
-
-
Agger, S.1
Lopez-Gallego, F.2
Schmidt-Dannert, C.3
-
27
-
-
77955637339
-
Natural functions of mycotoxins and control of their biosynthesis in fungi
-
Reverberi, M., Ricelli, A., Zjalic, S., Fabbri, A. & Fanelli, C. Natural functions of mycotoxins and control of their biosynthesis in fungi. Appl. Microbiol. Biotechnol. 8 7, 899-911 (2010).
-
(2010)
Appl. Microbiol. Biotechnol.
, vol.87
, pp. 899-911
-
-
Reverberi, M.1
Ricelli, A.2
Zjalic, S.3
Fabbri, A.4
Fanelli, C.5
-
28
-
-
84860511529
-
Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen
-
Olson, A. et al. Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen. New Phytol. 194, 1001-1013 (2012).
-
(2012)
New Phytol.
, vol.194
, pp. 1001-1013
-
-
Olson, A.1
-
29
-
-
84859466995
-
Comparative genomics of C eriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis
-
Fernandez-Fueyo, E. et al. Comparative genomics of C eriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis. Proc. Natl Acad. Sci. USA 1 09, 5458-5463 (2012).
-
(2012)
Proc. Natl Acad. Sci. USA
, vol.109
, pp. 5458-5463
-
-
Fernandez-Fueyo, E.1
-
30
-
-
79961228770
-
The plant cell wall-decomposing machinery underlies the functional diversity of forest fungi
-
Eastwood, D. C. et al. Th e plant cell wall-decomposing machinery underlies the functional diversity of forest fungi. Science 333, 762-765 (2011).
-
(2011)
Science
, vol.333
, pp. 762-765
-
-
Eastwood, D.C.1
-
31
-
-
0034649566
-
Th e Arabidopsis Genome Initiative. Analysis of the genome sequence of the fl owering plant Arabidopsis thaliana
-
Th e Arabidopsis Genome Initiative. Analysis of the genome sequence of the fl owering plant Arabidopsis thaliana. Nature 408, 796-815 (2000).
-
(2000)
Nature
, vol.408
, pp. 796-815
-
-
-
32
-
-
34249908934
-
The peroxisomal protein import machinery
-
DOI 10.1016/j.febslet.2007.04.001, PII S0014579307003705, Vienna Special Issue: Molecular Machines
-
Platta, H. W. & Erdmann, R. Th e peroxisomal protein import machinery. FEBS Lett. 5 81, 2811-2819 (2007). (Pubitemid 46874385)
-
(2007)
FEBS Letters
, vol.581
, Issue.15
, pp. 2811-2819
-
-
Platta, H.W.1
Erdmann, R.2
-
33
-
-
79959920872
-
AntiSMASH: Rapid identifi cation, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences
-
Medema, M. H. et al. AntiSMASH: rapid identifi cation, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences. N ucleic Acids Res. 3 9, W339-W346 (2011).
-
(2011)
N Ucleic Acids Res.
, vol.39
-
-
Medema, M.H.1
-
34
-
-
45849147020
-
VelB/VeA/LaeA complex coordinates light signal with fungal development and secondary metabolism
-
DOI 10.1126/science.1155888
-
Bayram, Ö. et al. VelB/VeA/LaeA complex coordinates light signal with fungal development and secondary metabolism. Science 320, 1504-1506 (2008). (Pubitemid 351929431)
-
(2008)
Science
, vol.320
, Issue.5882
, pp. 1504-1506
-
-
Bayram, O.1
Krappmann, S.2
Ni, M.3
Jin, W.B.4
Helmstaedt, K.5
Valerius, O.6
Braus-Stromeyer, S.7
Kwon, N.-J.8
Keller, N.P.9
Yu, J.-H.10
Braus, G.H.11
-
35
-
-
83355169636
-
Coordination of secondary metabolism and development in fungi: The velvet family of regulatory proteins
-
Bayram, Ö. & Braus, G. H. Coordination of secondary metabolism and development in fungi: the velvet family of regulatory proteins. FEMS Microbiol. Rev. 36, 1-24 (2012).
-
(2012)
FEMS Microbiol. Rev.
, vol.36
, pp. 1-24
-
-
Bayram, Ö.1
Braus, G.H.2
-
36
-
-
33749236250
-
A fungal family of transcriptional regulators: The zinc cluster proteins
-
DOI 10.1128/MMBR.00015-06
-
MacPherson, S., Larochelle, M. & Turcotte, B. A fungal family of transcriptional regulators: the zinc cluster proteins. M icrobiol. Mol. Biol. Rev. 7 0, 583-604 (2006). (Pubitemid 44484686)
-
(2006)
Microbiology and Molecular Biology Reviews
, vol.70
, Issue.3
, pp. 583-604
-
-
MacPherson, S.1
Larochelle, M.2
Turcotte, B.3
-
37
-
-
77955274600
-
SMURF: Genomic mapping of fungal secondary metabolite clusters
-
Khaldi, N. et al. SMURF: genomic mapping of fungal secondary metabolite clusters. Fungal Genet. Biol. 47, 736-741 (2010).
-
(2010)
Fungal Genet. Biol.
, vol.47
, pp. 736-741
-
-
Khaldi, N.1
-
38
-
-
43749086015
-
Epigenetic remodeling of the fungal secondary metabolome
-
Williams, R. B., Henrikson, J. C., Hoover, A. R., Lee, A. E. & Cichewicz, R. H. Epigenetic remodeling of the fungal secondary metabolome. Org. Biomol. Chem. 6, 1895-1897 (2008).
-
(2008)
Org. Biomol. Chem.
, vol.6
, pp. 1895-1897
-
-
Williams, R.B.1
Henrikson, J.C.2
Hoover, A.R.3
Lee, A.E.4
Cichewicz, R.H.5
-
39
-
-
58149200943
-
The Carbohydrate-Active EnZymes database (CAZy): An expert resource for Glycogenomics
-
Cantarel, B. L. et al. Th e Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics. Nucleic Acids Res. 37, D233-D238 (2009).
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Cantarel, B.L.1
-
40
-
-
67649799362
-
Microbial degradation of lignin: How a bulky recalcitrant polymer is effi ciently recycled in nature and how we can take advantage of this
-
Ruiz-Dueñas, F. J. & Martínez, Á.T. Microbial degradation of lignin: how a bulky recalcitrant polymer is effi ciently recycled in nature and how we can take advantage of this. M icrobiol. Biotechnol. 2, 164-177 (2009).
-
(2009)
M Icrobiol. Biotechnol.
, vol.2
, pp. 164-177
-
-
Ruiz-Dueñas, F.J.1
Martínez, Á.T.2
-
41
-
-
0034326823
-
Production of hydroxyl radical by the synergistic action of fungal laccase and aryl alcohol oxidase
-
Guillén, F., Gómez-Toribio, V., Martinez, M. J. & Martinez, A. T. Production of hydroxyl radical by the synergistic action of fungal laccase and aryl alcohol oxidase. Arch. Biochem. Biophys. 3 83, 142-147 (2000).
-
(2000)
Arch. Biochem. Biophys.
, vol.383
, pp. 142-147
-
-
Guillén, F.1
Gómez-Toribio, V.2
Martinez, M.J.3
Martinez, A.T.4
-
42
-
-
78649449149
-
Progress in tracing the evolutionary paths of cytochrome P450
-
Nelson, D. R. Progress in tracing the evolutionary paths of cytochrome P450. Biochim. Biophys. Acta 1814, 14-18 (2011).
-
(2011)
Biochim. Biophys. Acta
, vol.1814
, pp. 14-18
-
-
Nelson, D.R.1
-
43
-
-
4444251975
-
Phylogenetic analysis of G anoderma based on nearly complete mitochondrial small-subunit ribosomal DNA sequences
-
Hong, S. G. & Jung, H. S. Phylogenetic analysis of G anoderma based on nearly complete mitochondrial small-subunit ribosomal DNA sequences. Mycologia 96, 742-755 (2004).
-
(2004)
Mycologia
, vol.96
, pp. 742-755
-
-
Hong, S.G.1
Jung, H.S.2
-
44
-
-
34347264527
-
Pulsed-fi eld gel electrophoresis
-
Herschleb, J., Ananiev, G. & Schwartz, D. C. Pulsed-fi eld gel electrophoresis. Nat. Protoc. 2, 677-684 (2007).
-
(2007)
Nat. Protoc.
, vol.2
, pp. 677-684
-
-
Herschleb, J.1
Ananiev, G.2
Schwartz, D.C.3
-
45
-
-
57249105124
-
Aggressive assembly of pyrosequencing reads with mates
-
Miller, J. R. et al. Aggressive assembly of pyrosequencing reads with mates. Bioinformatics 2 4, 2818-2824 (2008).
-
(2008)
Bioinformatics
, vol.24
, pp. 2818-2824
-
-
Miller, J.R.1
-
46
-
-
79951530130
-
Scaff olding pre-assembled contigs using SSPACE
-
Boetzer, M., Henkel, C. V., Jansen, H. J., Butler, D. & Pirovano, W. Scaff olding pre-assembled contigs using SSPACE. Bioinformatics 2 7, 578-579 (2011).
-
(2011)
Bioinformatics
, vol.27
, pp. 578-579
-
-
Boetzer, M.1
Henkel, C.V.2
Jansen, H.J.3
Butler, D.4
Pirovano, W.5
-
47
-
-
67650711615
-
SOAP2: An improved ultrafast tool for short read alignment
-
Li, R. et al. SOAP2: an improved ultrafast tool for short read alignment. Bioinformatics 2 5, 1966-1967 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 1966-1967
-
-
Li, R.1
-
48
-
-
73649103712
-
A single molecule scaff old for the maize genome
-
Zhou, S. et al. A single molecule scaff old for the maize genome. Plos Genet. 5, e1000711 (2009).
-
(2009)
Plos Genet.
, vol.5
-
-
Zhou, S.1
-
49
-
-
0141519284
-
Whole-genome shotgun optical mapping of Rhodobacter sphaeroides strain 2.4.1 and its use for whole-genome shotgun sequence assembly
-
DOI 10.1101/gr.1128803
-
Zhou, S. et al. Whole-genome shotgun optical mapping of Rhodobacter sphaeroides strain 2.4.1 and its use for whole-genome shotgun sequence assembly. Genome Res. 1 3, 2142-2151 (2003). (Pubitemid 37161771)
-
(2003)
Genome Research
, vol.13
, Issue.9
, pp. 2142-2151
-
-
Zhou, S.1
Kvikstad, E.2
Kile, A.3
Severin, J.4
Forrest, D.5
Runnheim, R.6
Churas, C.7
Hickman, J.W.8
Mackenzie, C.9
Choudhary, M.10
Donohue, T.11
Kaplan, S.12
Schwartz, D.C.13
-
50
-
-
38049057159
-
MAKER: An easy-to-use annotation pipeline designed for emerging model organism genomes
-
Cantarel, B. L. et al. MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes. Genome Res. 18, 188-196 (2008).
-
(2008)
Genome Res.
, vol.18
, pp. 188-196
-
-
Cantarel, B.L.1
-
51
-
-
0034065724
-
Ab initio gene finding in Drosophila genomic DNA
-
DOI 10.1101/gr.10.4.516
-
Salamov, A. A. & Solovyev, V. V. Ab initio gene fi nding in Drosophila genomic DNA. Genome Res. 1 0, 516-522 (2000). (Pubitemid 30259081)
-
(2000)
Genome Research
, vol.10
, Issue.4
, pp. 516-522
-
-
Salamov, A.A.1
Solovyev, V.V.2
-
52
-
-
84857701617
-
Draft genome sequence and genetic transformation of the oleaginous alga Nannochloropis gaditana
-
Radakovits, R. et al. Draft genome sequence and genetic transformation of the oleaginous alga Nannochloropis gaditana. N at. Commun. 3, 686 (2012).
-
(2012)
N At. Commun.
, vol.3
, pp. 686
-
-
Radakovits, R.1
-
53
-
-
2942544417
-
Gene fi nding in novel genomes
-
Korf, I. Gene fi nding in novel genomes. B MC Bioinformatics 5, 59 (2004).
-
(2004)
B MC Bioinformatics
, vol.5
, pp. 59
-
-
Korf, I.1
-
54
-
-
2942527473
-
Gene prediction with a hidden Markov model and a new intron submodel
-
DOI 10.1093/bioinformatics/btg1080
-
Stanke, M. & Waack, S. Gene prediction with a hidden Markov model and a new intron submodel. B ioinformatics 1 9, Ii215-Ii225 (2003). (Pubitemid 41296659)
-
(2003)
Bioinformatics
, vol.19
, Issue.SUPPL. 2
-
-
Stanke, M.1
Waack, S.2
-
55
-
-
79551624472
-
Considering transposable element diversifi cation in de novo annotation approaches
-
Flutre, T., Duprat, E., Feuillet, C. & Quesneville, H. Considering transposable element diversifi cation in de novo annotation approaches. PLoS One 6, e16526 (2011).
-
(2011)
PLoS One
, vol.6
-
-
Flutre, T.1
Duprat, E.2
Feuillet, C.3
Quesneville, H.4
-
56
-
-
84875420788
-
Eff ector diversifi cation within compartments of the Leptosphaeria maculans genome aff ected by Repeat-Induced Point mutations
-
Rouxel, T. et al. Eff ector diversifi cation within compartments of the Leptosphaeria maculans genome aff ected by Repeat-Induced Point mutations. Nat. Commun. 2, 202 (2011).
-
(2011)
Nat. Commun.
, vol.2
, pp. 202
-
-
Rouxel, T.1
-
57
-
-
77951121533
-
Denovo sequencing and analysis of the American ginseng root transcriptome using a GS FLX Titanium platform to discover putative genes involved in ginsenoside biosynthesis
-
Sun, C. et al. De novo sequencing and analysis of the American ginseng root transcriptome using a GS FLX Titanium platform to discover putative genes involved in ginsenoside biosynthesis. BMC Genomics 11, 262 (2010).
-
(2010)
BMC Genomics
, vol.11
, pp. 262
-
-
Sun, C.1
-
58
-
-
79960264362
-
Full-length transcriptome assembly from RNA-Seq data without a reference genome
-
Grabherr, M. G. et al. Full-length transcriptome assembly from RNA-Seq data without a reference genome. N at. Biotechnol. 2 9, 644-652 (2011).
-
(2011)
N At. Biotechnol.
, vol.29
, pp. 644-652
-
-
Grabherr, M.G.1
-
59
-
-
77952123055
-
Transcript assembly and quantifi cation by RNA-Seq reveals unannotated transcripts and isoform switching during cell diff erentiation
-
Trapnell, C. et al. Transcript assembly and quantifi cation by RNA-Seq reveals unannotated transcripts and isoform switching during cell diff erentiation. Nat. Biotechnol. 28, 511-515 (2010).
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
-
60
-
-
63849236868
-
The CYPome (Cytochrome P450 complement) of A spergillus nidulans
-
Kelly, D. E., Kraševec, N., Mullins, J. & Nelson, D. R. Th e CYPome (Cytochrome P450 complement) of A spergillus nidulans. F ungal Genet. Biol. 46, S53-S61 (2009).
-
(2009)
F Ungal Genet. Biol.
, vol.46
-
-
Kelly, D.E.1
Kraševec, N.2
Mullins, J.3
Nelson, D.R.4
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