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Volumn 10, Issue 72, 2011, Pages 16145-16151

Genetic diversity assessment of Diplocyclos palmatus (L.) C. Jeffrey from India using internal transcribed spacer (ITS) sequences of nuclear ribosomal DNA

Author keywords

Diplocyclos palmatus (L.) C. Jeffrey; Genetic diversity; Internal transcribed spacer (ITS); nrDNA

Indexed keywords

INTERNAL TRANSCRIBED SPACER; NUCLEAR RIBOSOME DNA; PLANT DNA; RIBOSOME DNA; UNCLASSIFIED DRUG;

EID: 84863274670     PISSN: 16845315     EISSN: None     Source Type: Journal    
DOI: 10.5897/AJB10.2002     Document Type: Article
Times cited : (2)

References (38)
  • 1
    • 77953087896 scopus 로고    scopus 로고
    • Plant Systematics Research Centre (TMBU) Publication, Bhagalpur, India
    • Ali MA, Pandey AK (2007). Cucurbitaceae of eastern Bihar, Plant Systematics Research Centre (TMBU) Publication, Bhagalpur, India.
    • (2007) Cucurbitaceae of eastern Bihar
    • Ali, M.A.1    Pandey, A.K.2
  • 2
    • 77953113901 scopus 로고    scopus 로고
    • Relationships among subfamily Cucurbitoideae (Family Cucurbitaceae) from India inferred from ITS sequences of nrDNA
    • Ali MA, Pandey AK, Lee J (2009). Relationships among subfamily Cucurbitoideae (Family Cucurbitaceae) from India inferred from ITS sequences of nrDNA. Phytomorphology, 59(3&4): 127-140.
    • (2009) Phytomorphology , vol.59 , Issue.3-4 , pp. 127-140
    • Ali, M.A.1    Pandey, A.K.2    Lee, J.3
  • 3
    • 0031252212 scopus 로고    scopus 로고
    • On the origins of the tetraploid Bromus species (section Bromus, Poaceae): Insights from the internal transcribed spacer sequences of nuclear ribosomal DNA
    • Ainouche ML, Bayer RJ (1997). On the origins of the tetraploid Bromus species (section Bromus, Poaceae): insights from the internal transcribed spacer sequences of nuclear ribosomal DNA. Genome, 40: 730-743.
    • (1997) Genome , vol.40 , pp. 730-743
    • Ainouche, M.L.1    Bayer, R.J.2
  • 4
    • 0344613211 scopus 로고    scopus 로고
    • Ribosomal ITS sequences and plant phylogenetic inference
    • Alvarez I, Wendel JF (2003) Ribosomal ITS sequences and plant phylogenetic inference. Mol. Phylo. Evol. 29: 417-434.
    • (2003) Mol. Phylo. Evol , vol.29 , pp. 417-434
    • Alvarez, I.1    Wendel, J.F.2
  • 5
    • 0002330345 scopus 로고
    • rDNA: Evolution over a billion years
    • In: edited by S Dutton (CRC Press, Boca Raton, FL, USA)
    • Appels R, Honeycutt RL (1986). rDNA: Evolution over a billion years. In: DNA systematics edited by S Dutton (CRC Press, Boca Raton, FL, USA), pp. 81-135.
    • (1986) DNA systematics , pp. 81-135
    • Appels, R.1    Honeycutt, R.L.2
  • 6
    • 0032233179 scopus 로고    scopus 로고
    • Phylogenetic utility of the external transcribed spacer (ETS) of 18S-26S rDNA: Congruence of ETS and ITS trees of Calycadenia (Compositae)
    • Baldwin BG, Markos S (1998). Phylogenetic utility of the external transcribed spacer (ETS) of 18S-26S rDNA: Congruence of ETS and ITS trees of Calycadenia (Compositae). Mol. Phylo. Evol. 10: 449-463.
    • (1998) Mol. Phylo. Evol , vol.10 , pp. 449-463
    • Baldwin, B.G.1    Markos, S.2
  • 8
    • 0031035491 scopus 로고    scopus 로고
    • The evolution of ribosomal DNA: Divergent paralogues and phylogenetic implications
    • Buckler ES, Ippolito A, Holtsford TP (1997). The evolution of ribosomal DNA: divergent paralogues and phylogenetic implications. Genetic, 145: 821-832.
    • (1997) Genetic , vol.145 , pp. 821-832
    • Buckler, E.S.1    Ippolito, A.2    Holtsford, T.P.3
  • 9
    • 0031029173 scopus 로고    scopus 로고
    • Persistent nuclear ribosomal DNA sequence polymorphism in the Amelanchier agamic complex (Rosaceae)
    • Campbell CS, Wojciechowski MF, Baldwin BG, Alice LA, Donoghue MJ (1997). Persistent nuclear ribosomal DNA sequence polymorphism in the Amelanchier agamic complex (Rosaceae). Mol. Biol. Evol. 14: 81-90.
    • (1997) Mol. Biol. Evol , vol.14 , pp. 81-90
    • Campbell, C.S.1    Wojciechowski, M.F.2    Baldwin, B.G.3    Alice, L.A.4    Donoghue, M.J.5
  • 11
    • 0242540417 scopus 로고    scopus 로고
    • Genetic relationships within the Cucurbitaceae assessed by consensus chloroplast simple sequence repeat (cc SSR) marker
    • Chung SM, Deena S, Walters D, Staub JE (2003). Genetic relationships within the Cucurbitaceae assessed by consensus chloroplast simple sequence repeat (cc SSR) marker. Can. J. Bot. 81: 814-832.
    • (2003) Can. J. Bot , vol.81 , pp. 814-832
    • Chung, S.M.1    Deena, S.2    Walters, D.3    Staub, J.E.4
  • 12
    • 2342495321 scopus 로고    scopus 로고
    • Plastid sequence evolution: A new pattern of nucleotide substitutions in the Cucurbitaceae
    • Decker-Walter DS, Chung S, Staub JE (2004). Plastid sequence evolution: a new pattern of nucleotide substitutions in the Cucurbitaceae. J. Mol. Evol. 58: 606-614.
    • (2004) J. Mol. Evol , vol.58 , pp. 606-614
    • Decker-Walter, D.S.1    Chung, S.2    Staub, J.E.3
  • 13
    • 0027729030 scopus 로고
    • Detection and quantification of concerted evolution and molecular drive
    • Dover GA, Linares AR, Bowen T, Hancock JM (1993). Detection and quantification of concerted evolution and molecular drive. Methods Enzymol. 224: 525-541.
    • (1993) Methods Enzymol , vol.224 , pp. 525-541
    • Dover, G.A.1    Linares, A.R.2    Bowen, T.3    Hancock, J.M.4
  • 14
    • 0002594984 scopus 로고
    • A rapid DNA isolation procedure for small quantities of fresh leaf tissue
    • Doyle JJ, Doyle JL (1987). A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. pp. 1911-1915.
    • (1987) Phytochem. Bull , pp. 1911-1915
    • Doyle, J.J.1    Doyle, J.L.2
  • 15
    • 2142815111 scopus 로고    scopus 로고
    • Fine scale geographic structure, intra-individual polymorphism and recombination in nuclear ribosomal internal transcribed spacers in Armeria (Plumbaginaceae)
    • Feliner GN, Larena BG, Aguilar JF (2004). Fine scale geographic structure, intra-individual polymorphism and recombination in nuclear ribosomal internal transcribed spacers in Armeria (Plumbaginaceae). Ann. Bot. 93: 189-200.
    • (2004) Ann. Bot , vol.93 , pp. 189-200
    • Feliner, G.N.1    Larena, B.G.2    Aguilar, J.F.3
  • 16
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall TA (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acid Symp. Ser. 41: 95-98.
    • (1999) Nucleic Acid Symp. Ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 17
    • 0002888491 scopus 로고    scopus 로고
    • Ribosomal DNA sequences and angiosperm systematics
    • In: Hollingsworth PM, Bateman RM, Gornall RJ (eds.), Taylor & Francis: London, UK
    • Hershkovitz MA, Zimmer EA, Hahn WJ (1999). Ribosomal DNA sequences and angiosperm systematics. In: Hollingsworth PM, Bateman RM, Gornall RJ (eds.) Molecular Systematics and Plant Evolution, Taylor & Francis: London, UK, pp. 268-326.
    • (1999) Molecular Systematics and Plant Evolution , pp. 268-326
    • Hershkovitz, M.A.1    Zimmer, E.A.2    Hahn, W.J.3
  • 18
    • 0036065546 scopus 로고    scopus 로고
    • Divergent and reticulate species relationships in Leucaena (Fabaceae) inferred from multiple data sources: Insights into polyploid origins and nrDNA polymorphism
    • Hughes CE, Bailey CD, Harris SA (2002). Divergent and reticulate species relationships in Leucaena (Fabaceae) inferred from multiple data sources: Insights into polyploid origins and nrDNA polymorphism. Am. J. Bot. 89: 1057-1073.
    • (2002) Am. J. Bot , vol.89 , pp. 1057-1073
    • Hughes, C.E.1    Bailey, C.D.2    Harris, S.A.3
  • 19
    • 33646057394 scopus 로고    scopus 로고
    • A new system of Cucurbitaceae
    • Jeffrey C (2005). A new system of Cucurbitaceae. Bot. Zhurn. 90: 332-335.
    • (2005) Bot. Zhurn , vol.90 , pp. 332-335
    • Jeffrey, C.1
  • 20
    • 0032042486 scopus 로고    scopus 로고
    • Molecular evolution of the internal transcribed spacers (ITS1 and ITS2) and phylogenetic relationships among the species of the family Cucurbitaceae
    • Jobst J, King K, Hemleben V (1998). Molecular evolution of the internal transcribed spacers (ITS1 and ITS2) and phylogenetic relationships among the species of the family Cucurbitaceae. Mol. Phylo. Evol. 9: 204-219.
    • (1998) Mol. Phylo. Evol , vol.9 , pp. 204-219
    • Jobst, J.1    King, K.2    Hemleben, V.3
  • 21
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences
    • Kimura M (1980). A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16: 111-120.
    • (1980) J. Mol. Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 22
    • 0037234825 scopus 로고    scopus 로고
    • Phylogeny and ecological radiation of New World thistles (Cirsium, Cardueae-Compositae) based on ITS and ETS rDNA sequence data
    • Kelch DG, Baldwin BG (2003). Phylogeny and ecological radiation of New World thistles (Cirsium, Cardueae-Compositae) based on ITS and ETS rDNA sequence data. Mol. Ecol., 12: 141-151.
    • (2003) Mol. Ecol , vol.12 , pp. 141-151
    • Kelch, D.G.1    Baldwin, B.G.2
  • 23
    • 84863291380 scopus 로고
    • Bisehn Singh Mahendra Pal Singh, Dehra Dun, India (Rep. ed.)
    • Kirtikar K, Basu BD (1975). Indian Medicinal Plants. Vol II, pp. 1106-1115. Bisehn Singh Mahendra Pal Singh, Dehra Dun, India (Rep. ed.).
    • (1975) Indian Medicinal Plants , vol.2 , pp. 1106-1115
    • Kirtikar, K.1    Basu, B.D.2
  • 24
    • 34247578958 scopus 로고    scopus 로고
    • A multi-locus chloroplast phylogeny for the Cucurbitaceae and its implications for character evolution and classification
    • Kocyan A, Zhang LB, Schaefer H, Renner SS (2007). A multi-locus chloroplast phylogeny for the Cucurbitaceae and its implications for character evolution and classification. Mol. Phylo. Evol. 44:553-577.
    • (2007) Mol. Phylo. Evol , vol.44 , pp. 553-577
    • Kocyan, A.1    Zhang, L.B.2    Schaefer, H.3    Renner, S.S.4
  • 25
    • 0037168614 scopus 로고    scopus 로고
    • Allopolyploidization and evolution of species with reduced floral structures in Lepidium L. (Brassicaceae)
    • Lee JY, Mummenho VK, Bowman JL (2002). Allopolyploidization and evolution of species with reduced floral structures in Lepidium L. (Brassicaceae). Proc. Natl. Acad. Sci. USA 99: 16835-16840.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 16835-16840
    • Lee, J.Y.1    Mummenho, V.K.2    Bowman, J.L.3
  • 26
    • 0028028666 scopus 로고
    • Conservation genetics: Beyond the maintenance of marker diversity
    • Milligan, BG, Leebens-Mack J, Strand AE (1994). Conservation genetics: beyond the maintenance of marker diversity. Mol. Ecol. 3: 423-435.
    • (1994) Mol. Ecol , vol.3 , pp. 423-435
    • Milligan, B.G.1    Leebens-Mack, J.2    Strand, A.E.3
  • 27
    • 0018147653 scopus 로고
    • Estimation of average heterozygosity and genetic distance from a small number of individuals
    • Nei M (1978). Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetic, 89: 583-590.
    • (1978) Genetic , vol.89 , pp. 583-590
    • Nei, M.1
  • 28
    • 33644871292 scopus 로고    scopus 로고
    • GENALEX 6: Genetic analysis in Excel, population genetic software for teaching and research
    • Peakall R, Smouse PE (2006). GENALEX 6: Genetic analysis in Excel, population genetic software for teaching and research. Mol. Ecol. Notes, 6: 288-295.
    • (2006) Mol. Ecol. Notes , vol.6 , pp. 288-295
    • Peakall, R.1    Smouse, P.E.2
  • 29
    • 0032972599 scopus 로고    scopus 로고
    • DnaSP version 3: An integrated program for molecular population genetics and molecular evolution analysis
    • Rozas J, Rozas R (1999). DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinfor. 15:174-175.
    • (1999) Bioinfor , vol.15 , pp. 174-175
    • Rozas, J.1    Rozas, R.2
  • 30
    • 79951607928 scopus 로고    scopus 로고
    • Phylogenetic relationships in the order Cucurbitales and a new classification of the gourd family (Cucurbitaceae)
    • Schaefer H, Renner SS (2011) Phylogenetic relationships in the order Cucurbitales and a new classification of the gourd family (Cucurbitaceae). Taxon 60(1): 122-138.
    • (2011) Taxon , vol.60 , Issue.1 , pp. 122-138
    • Schaefer, H.1    Renner, S.S.2
  • 31
    • 0002080561 scopus 로고    scopus 로고
    • Choosing an approach and an appropriate gene for phylogenetic analysis
    • In: Soltis D, Soltis P, Doyle J (eds.), Kluwer Academic Publishers: Boston, MA, USA
    • Soltis D, Soltis P (1998). Choosing an approach and an appropriate gene for phylogenetic analysis. In: Soltis D, Soltis P, Doyle J (eds.) Molecular Systematics of Plants II. DNA Sequencing, Kluwer Academic Publishers: Boston, MA, USA, pp. 1-42.
    • (1998) Molecular Systematics of Plants II. DNA Sequencing , pp. 1-42
    • Soltis, D.1    Soltis, P.2
  • 32
    • 0027157960 scopus 로고
    • Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
    • Tamura K, Nei M (1993). Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 10: 512-526.
    • (1993) Mol. Biol. Evol , vol.10 , pp. 512-526
    • Tamura, K.1    Nei, M.2
  • 33
    • 3342920601 scopus 로고    scopus 로고
    • Prospects for inferring very large phylogenies by using the neighbor-joining method
    • Tamura, K., Nei, M. & Kumar, S. 2004. Prospects for inferring very large phylogenies by using the neighbor-joining method. Proceedings National Academy of Sciences (USA) 101: 11030-11035.
    • (2004) Proceedings National Academy of Sciences (USA) , vol.101 , pp. 11030-11035
    • Tamura, K.1    Nei, M.2    Kumar, S.3
  • 34
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4
    • Tamura K, Dudley J, Nei M, Kumar S (2007). MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4. Mol. Biol. Evol. 24: 1596-1599.
    • (2007) Mol. Biol. Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 35
    • 0031574072 scopus 로고    scopus 로고
    • The ClustalX windows interface: Flexible strategies for Multiple sequence alignment aided by quality analysis tools
    • Thompson, JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins GD (1997). The ClustalX windows interface: flexible strategies for Multiple sequence alignment aided by quality analysis tools. Nucleic Acid Res. 24: 4876-4882.
    • (1997) Nucleic Acid Res , vol.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, G.D.5
  • 36
    • 0016491430 scopus 로고
    • On the number of segregating sites in genetical models without recombination
    • Watterson GA (1975). On the number of segregating sites in genetical models without recombination. Theor. Pop. Biol. 7: 256-276.
    • (1975) Theor. Pop. Biol , vol.7 , pp. 256-276
    • Watterson, G.A.1
  • 37
    • 0000432452 scopus 로고
    • Amplifcation and direct sequencing of fungal ribosomal RNA genes for phylogenetics
    • In:, Innis M, Gelfand D, Sninsky J, White T (eds.). Academic Press, San Diego, CA, USA
    • White TJ, Bruns T, Lee S, Taylor J (1990). Amplifcation and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: PCR Protocols: A Guide to Methods and Applications, Innis M, Gelfand D, Sninsky J, White T (eds.). Academic Press, San Diego, CA, USA. pp. 315-322.
    • (1990) PCR Protocols: A Guide to Methods and Applications , pp. 315-322
    • White, T.J.1    Bruns, T.2    Lee, S.3    Taylor, J.4
  • 38
    • 33646024597 scopus 로고    scopus 로고
    • Phylogeny of the Cucurbitales based on DNA sequences of nine loci from three genomes: Implications for morphological and sexual system evolution
    • Zhang LB, Mark PS, Alexander K, Renner SS (2006). Phylogeny of the Cucurbitales based on DNA sequences of nine loci from three genomes: Implications for morphological and sexual system evolution. Mol. Phylo. Evol. 39: 305-322.
    • (2006) Mol. Phylo. Evol , vol.39 , pp. 305-322
    • Zhang, L.B.1    Mark, P.S.2    Alexander, K.3    Renner, S.S.4


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