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Volumn 58, Issue 5, 2004, Pages 606-614

Plastid sequence evolution: A new pattern of nucleotide substitutions in the cucurbitaceae

Author keywords

Chloroplast genome; Cucurbitaceae; Nucleotide substitution; Transition bias; Transversion

Indexed keywords

ADENINE; CYTOSINE; GUANINE; PURINE DERIVATIVE; PYRIMIDINE; THYMINE;

EID: 2342495321     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00239-004-2585-z     Document Type: Article
Times cited : (12)

References (28)
  • 1
    • 0022914759 scopus 로고
    • Compositional constraints and genome evolution
    • Bernardi G, Bernardi G (1986) Compositional constraints and genome evolution. J Mol Evol 24:1-11
    • (1986) J Mol Evol , vol.24 , pp. 1-11
    • Bernardi, G.1    Bernardi, G.2
  • 2
    • 0031773261 scopus 로고    scopus 로고
    • Substitution bias, rapid saturation, and the use of mtDNA for nematode systematics
    • Blouin MS, Yowell CA, Courtney CH, Dame JB (1998) Substitution bias, rapid saturation, and the use of mtDNA for nematode systematics. Mol Biol Evol 15:1719-1727
    • (1998) Mol Biol Evol , vol.15 , pp. 1719-1727
    • Blouin, M.S.1    Yowell, C.A.2    Courtney, C.H.3    Dame, J.B.4
  • 3
    • 0000985161 scopus 로고    scopus 로고
    • A perspective on the contribution of plastid rbcL DNA sequences to angiosperm phylogenetics
    • Soltis DE, Soltis PS, Doyle JJ (eds) Kluwer Academic, London
    • Chase MW, Albert VA (1998) A perspective on the contribution of plastid rbcL DNA sequences to angiosperm phylogenetics. In: Soltis DE, Soltis PS, Doyle JJ (eds) Molecular systematics of plants II. Kluwer Academic, London, pp 488-507
    • (1998) Molecular Systematics of Plants II , pp. 488-507
    • Chase, M.W.1    Albert, V.A.2
  • 4
    • 0041874895 scopus 로고    scopus 로고
    • The development and evaluation of consensus chloroplast primer pairs that possess highly variable sequence regions in a diverse array of plant taxa
    • Chung S-M, Staub JE (2003) The development and evaluation of consensus chloroplast primer pairs that possess highly variable sequence regions in a diverse array of plant taxa. Theor Appl Genet 107:751-767
    • (2003) Theor Appl Genet , vol.107 , pp. 751-767
    • Chung, S.-M.1    Staub, J.E.2
  • 5
    • 0242540417 scopus 로고    scopus 로고
    • Genetic relationships within the Cucurbitaceae as assessed by ccSSR marker and sequence analyses
    • Chung S-M, Decker-Walters DS, Staub JE (2003) Genetic relationships within the Cucurbitaceae as assessed by ccSSR marker and sequence analyses. Can J Bot 81:814-832
    • (2003) Can J Bot , vol.81 , pp. 814-832
    • Chung, S.-M.1    Decker-Walters, D.S.2    Staub, J.E.3
  • 6
    • 0000413867 scopus 로고
    • Notes on Cucurbitaceae, including a proposed new classification of the family
    • Jeffrey C (1962) Notes on Cucurbitaceae, including a proposed new classification of the family. Kew Bull 15:337-371
    • (1962) Kew Bull , vol.15 , pp. 337-371
    • Jeffrey, C.1
  • 7
    • 84990442853 scopus 로고
    • A review of the Cucurbitaceae
    • Jeffrey C (1980) A review of the Cucurbitaceae. Bot J Linn Soc 81:233-247
    • (1980) Bot J Linn Soc , vol.81 , pp. 233-247
    • Jeffrey, C.1
  • 8
    • 0043196056 scopus 로고
    • Systematics of the Cucurbitaceae: An overview
    • Bates DM, Robinson RW, Jeffrey C (eds) Cornell University Press, Ithaca, NY
    • Jeffrey C (1990) Systematics of the Cucurbitaceae: an overview. In: Bates DM, Robinson RW, Jeffrey C (eds) Biology and utilization of the Cucurbitaceae. Cornell University Press, Ithaca, NY, pp 3-9
    • (1990) Biology and Utilization of the Cucurbitaceae , pp. 3-9
    • Jeffrey, C.1
  • 10
    • 0028807395 scopus 로고
    • Metabolic rate and directional nucleotide substitution in animal mitochondrial DNA
    • Martin AP (1995) Metabolic rate and directional nucleotide substitution in animal mitochondrial DNA. Mol Biol Evol 12:1124-1131
    • (1995) Mol Biol Evol , vol.12 , pp. 1124-1131
    • Martin, A.P.1
  • 11
    • 0028865532 scopus 로고
    • Neighboring base composition and transversion/transition bias in a comparison of rice and maize chloroplast noncoding regions
    • Morton BR (1995) Neighboring base composition and transversion/transition bias in a comparison of rice and maize chloroplast noncoding regions. Proc Natl Acad Sci USA 92:9717-9721
    • (1995) Proc Natl Acad Sci USA , vol.92 , pp. 9717-9721
    • Morton, B.R.1
  • 12
    • 0037403391 scopus 로고    scopus 로고
    • The role of context-dependent mutations in generating compositional and codon usage bias in grass chloroplast DNA
    • Morton BR (2003) The role of context-dependent mutations in generating compositional and codon usage bias in grass chloroplast DNA. J Mol Evol 56:616-629
    • (2003) J Mol Evol , vol.56 , pp. 616-629
    • Morton, B.R.1
  • 13
    • 0030870963 scopus 로고    scopus 로고
    • The influence of specific neighboring bases on substitution bias in noncoding regions of the chloroplast genome
    • Morton BR, Oberholzer VM, Clegg MT (1997) The influence of specific neighboring bases on substitution bias in noncoding regions of the chloroplast genome. J Mol Evol 45:227-231
    • (1997) J Mol Evol , vol.45 , pp. 227-231
    • Morton, B.R.1    Oberholzer, V.M.2    Clegg, M.T.3
  • 14
    • 0001329538 scopus 로고    scopus 로고
    • Patterns of sequence evolution and implications for parsimony analysis of chloroplast DNA
    • Soltis DE, Soltis PS, Doyle JJ (eds) Kluwer Academic, London
    • Olmstead RG, Reeves PA, Yen AC (1998) Patterns of sequence evolution and implications for parsimony analysis of chloroplast DNA. In: Soltis DE, Soltis PS, Doyle JJ (eds) Molecular systematics of plants II. Kluwer Academic, London, pp 164-187
    • (1998) Molecular Systematics of Plants II , pp. 164-187
    • Olmstead, R.G.1    Reeves, P.A.2    Yen, A.C.3
  • 16
    • 0033573925 scopus 로고    scopus 로고
    • Patterns of nucleotide substitution in Drosophila and mammalian genomes
    • Petrov DA, Hartl DL (1999) Patterns of nucleotide substitution in Drosophila and mammalian genomes. Proc Natl Acad Sci USA 96:1475-1479
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 1475-1479
    • Petrov, D.A.1    Hartl, D.L.2
  • 17
    • 0031115164 scopus 로고    scopus 로고
    • Polyphyletism of Celatrales deduced from a chloroplast noncoding DNA region
    • Savolainen V, Spichiger R, Manen J-F (1997) Polyphyletism of Celatrales deduced from a chloroplast noncoding DNA region. Mol Phylogenet Evol 7:145-157
    • (1997) Mol Phylogenet Evol , vol.7 , pp. 145-157
    • Savolainen, V.1    Spichiger, R.2    Manen, J.-F.3
  • 18
    • 0001337092 scopus 로고
    • Molecular cloning and sequence analysis of the cyanobacterial gene for the large subunit of ribulose-1,5-bisphosphate carboxylase/ oxygenase
    • Shinozaki K, Yamada C, Takahata N, Sugiura M (1983) Molecular cloning and sequence analysis of the cyanobacterial gene for the large subunit of ribulose-1,5-bisphosphate carboxylase/ oxygenase. Proc Natl Acad Sci USA 80:4050-4054
    • (1983) Proc Natl Acad Sci USA , vol.80 , pp. 4050-4054
    • Shinozaki, K.1    Yamada, C.2    Takahata, N.3    Sugiura, M.4
  • 20
    • 0036066363 scopus 로고    scopus 로고
    • Molecular phylogenetics of Thymelaeaceae with particular reference to African and Australian genera
    • Van der Bank M, Fay MF, Chase MW (2002) Molecular phylogenetics of Thymelaeaceae with particular reference to African and Australian genera. Taxon 51:329-339
    • (2002) Taxon , vol.51 , pp. 329-339
    • Van Der Bank, M.1    Fay, M.F.2    Chase, M.W.3
  • 21
    • 0012296704 scopus 로고
    • Determination and interpretation of comigrating allozymes among genera of the Benincaseae (Cucurbitaceae)
    • Walters TW, Decker-Walters DS, Posluszny U, Kevan PG (1991) Determination and interpretation of comigrating allozymes among genera of the Benincaseae (Cucurbitaceae). Syst Bot 16:30-40
    • (1991) Syst Bot , vol.16 , pp. 30-40
    • Walters, T.W.1    Decker-Walters, D.S.2    Posluszny, U.3    Kevan, P.G.4
  • 22
    • 0011877266 scopus 로고
    • Cytological and phylogenetic studies in the Cucurbitaceae
    • Whitaker TW (1933) Cytological and phylogenetic studies in the Cucurbitaceae. Bot Gaz 94:780-790
    • (1933) Bot Gaz , vol.94 , pp. 780-790
    • Whitaker, T.W.1
  • 23
    • 0001480951 scopus 로고
    • When did Eve live? An evolutionary detective story
    • Wills C (1995) When did Eve live? An evolutionary detective story. Evolution 49:593-607
    • (1995) Evolution , vol.49 , pp. 593-607
    • Wills, C.1
  • 24
    • 0035983979 scopus 로고    scopus 로고
    • A study of the phylogeny of Brassica rapa, B. nigra, Raphanus sativus, and their related genera using noncoding regions of chloroplast DNA
    • Yang Y-W, Tai P-Y, Chen Y, Li W-H (2002) A study of the phylogeny of Brassica rapa, B. nigra, Raphanus sativus, and their related genera using noncoding regions of chloroplast DNA. Mol Phylogenet Evol 23:268-275
    • (2002) Mol Phylogenet Evol , vol.23 , pp. 268-275
    • Yang, Y.-W.1    Tai, P.-Y.2    Chen, Y.3    Li, W.-H.4
  • 25
    • 0028064845 scopus 로고
    • Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximation methods
    • Yang Z (1994) Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximation methods. J Mol Evol 39:306-314
    • (1994) J Mol Evol , vol.39 , pp. 306-314
    • Yang, Z.1
  • 26
    • 0030451420 scopus 로고    scopus 로고
    • Among-site rate variation and its impact on phylogenetic analyses
    • Yang Z (1996) Among-site rate variation and its impact on phylogenetic analyses. Tree 11:367-372
    • (1996) Tree , vol.11 , pp. 367-372
    • Yang, Z.1
  • 27
    • 0033004740 scopus 로고    scopus 로고
    • Estimation of the transition/transversion rate bias and species sampling
    • Yang Z, Yoder AD (1999) Estimation of the transition/transversion rate bias and species sampling. J Mol Evol 48:274-283
    • (1999) J Mol Evol , vol.48 , pp. 274-283
    • Yang, Z.1    Yoder, A.D.2
  • 28
    • 0000282615 scopus 로고
    • The nature of nucleotide sequence divergence between barley and maize chloroplast DNA
    • Zurawski G, Clegg MT, Brown AHD (1984) The nature of nucleotide sequence divergence between barley and maize chloroplast DNA. Genetics 106:735-749
    • (1984) Genetics , vol.106 , pp. 735-749
    • Zurawski, G.1    Clegg, M.T.2    Brown, A.H.D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.