Phylogeny and ecological radiation of New World thistles (Cirsium, Cardueae - Compositae) based on ITS and ETS rDNA sequence data

Molecular Ecology

Volumn 12, Issue 1, 2003, Pages 141-151

  Kelch, Dean G ^a   Baldwin, Bruce G ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Cardueae; Cirsium; Compositae; Evolution; Phylogeny; Radiation

Indexed keywords

CIRSIUM; DNA, PLANT; DNA, RIBOSOMAL SPACER; ECOLOGY; EVOLUTION, MOLECULAR; LIKELIHOOD FUNCTIONS; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEQUENCE ANALYSIS, DNA;

ASTERACEAE; CARDUEAE; CIRSIUM; EMBRYOPHYTA; MAGNOLIOPHYTA;

EID: 0037234825     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-294X.2003.01710.x     Document Type: Article

References (60)

1. Andreasen K, Baldwin BG (2001) Unequal evolutionary rates between annual and perennial lineages of checker mallows (Sidalcea, Malvaceae): evidence from 18S-26S rDNA internal and external transcribed spacers. Molecular Biology and Evolution, 18, 936-944.
2. Axelrod DI (1992) Miocene floristic change at 15 Ma, Nevada to Washington, U.S.A. Palaeobotanist, 41, 234-239.
3. Baldwin BG (1997) Adaptive radiation of the Hawaiian silversword alliance: congruence and conflict of phylogenetic evidence from molecular and non-molecular investigations. In: Molecular Evolution and Adaptive Radiation (eds Givnish TJ, Sytsma KJ), pp. 103-128. Cambridge University Press, Cambridge.
4. Baldwin BG, Markos S (1998) Phylogenetic utility of the external transcribed spacer (ETS) of 18S-26S rDNA: congruence of ETS and ITS trees of Calycadenia (Compositae). Molecular Phylogenetics and Evolution, 10, 449-463.
5. Baldwin BG, Sanderson MJ (1998) Age and rate of diversification of the Hawaiian silversword alliance (Compositae). Proceedings of the National Academy of Sciences USA, 95, 9402-9406.
6. Baldwin BG, Sanderson MJ, Porter JM, Wojciechowski MF, Campbell CS, Donoghue MJ (1995) The ITS region of nuclear ribosomal DNA: a valuable source of evidence on angiosperm phylogeny. Annals of the Missouri Botanical Garden, 82, 247-277.
7. Baldwin BG, Wessa BL (2000) Origin and relationships of the tarweed-silversword lineage (Compositae - Madiinae). American Journal of Botany, 87, 1890-1908.
8. Baldwin BG, Wessa BL, Panero JL (2002) Nuclear rDNA evidence for major lineages of helenioid Heliantheae (Compositae). Systematic Botany, 27, 161-198.
9. Best C, Howell JT, Knight W, Knight I, Wells M (1996) A Flora of Sonoma County, 1st edn. California Native Plant Society, Sacramento.
10. Chan R, Baldwin BG, Ornduff R (2001) Goldfields revisited: a molecular phylogenetic perspective on the evolution of Lasthenia (Compositae, Heliantheae sensu lato). International Journal of Plant Sciences, 162, 1347-1360.
11. Clevinger JA, Panero JL (2000) Phylogenetic analysis of Silphium and subtribe Engelmanniinae (Asteraceae: Heliantheae) based on ITS and ETS sequence data. American Journal of Botany, 87, 565-572.
12. CNPS (2001) California Native Plant Society's Inventory of Rare and Endangered Plants of California, 5th edn. California Native Plant Society, Sacramento.
13. Dallman PR (1998) Plant Life in the World's Mediterranean Climates, 1st edn. California Native Plant Society, Sacramento.
14. Darwin C (1859) On the Origin of Species by Means of Natural Selection. Reprint of 1st edition (1950). Watts, London.
15. De Candolle AP (1837) Prodromus Sytematis Naturalis, Pars Sexta, 1st edn. Treuttel et Würtz, Paris.
16. Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin, 19, 11-15.
17. Esselman EJ, Crawford DJ, Brauner S, Stuessy TF, Anderson GJ, Silva MO (2000) RAPD marker diversity within and divergence among species of Dendroseris (Asteraceae: Lactuceae). American Journal of Botany, 87, 591-596.
18. Felsenstein J (1988) Phylogenies from molecular sequences: inference and reliability. Annual Review of Genetics, 22, 521-566.
19. Flower BP, Kennett JP (1994) The middle Miocene climatic transition: East Antarctic ice sheet development, deep ocean circulation and global carbon cycling. Palaeogeography Palaeoclimatology Palaeoecology, 108, 537-555.
20. Garcia-Jacas N, Susanna AN, Garnatje T, Vilatersana R (2001) Generic delimitation and phylogeny of the subtribe Centaureinae (Asteraceae): a combined nuclear and chloroplast DNA analysis. Annals of Botany, 87, 503-515.
21. Gaut BS, Morton BR, McCaig BC, Clegg MT (1996) Substitution rate comparisons between grasses and palms: synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene gene rbcL. Proceedings of the National Academy of Sciences USA, 93, 10274-10279.
22. Givnish TJ (1997) Adaptive radiation and molecular systematics: issues and approaches. In: Molecular Evolution and Adaptive Radiation (eds Givnish TJ, Sytsma KJ), pp. 1-54. Cambridge University Press, Cambridge.
23. Hickman JC, ed. (1993) The Jepson Manual: Higher Plants of California, 1st edn. University of California Press, Berkeley.
24. Hodges SA (1997) Rapid radiation due to a key innovation in columbines (Ranunculaceae: Aquilegia). In: Molecular Evolution and Adaptive Radiation (eds Givnish TJ, Sytsma KJ), pp. 1-54. Cambridge University Press, Cambridge.
25. Hodges SA, Arnold ML (1994) Columbines: a geographically widespread species flock. Proceedings of the National Academy of Sciences USA, 91, 5129-5132.
26. Holland VL, Keil DJ (1995) California Vegetation, 1st edn. Kendall/Hunt Publishing Co, Dubuque.
27. Howell JT (1957) The California flora and its province. Leaflets of Western Botany, 8, 133-138.
28. Keil DJ, Turner CE (1993) Cirsium. In: The Jepson Manual: Higher Plants of California (ed. by Hickman JC), pp. 232-239. University of California Press, Berkeley.
29. Kim SC, Crawford DJ, Francisco-Ortega J, Santos-Guerra A (1996) A common origin for woody Sonchus and five related genera in the Macaronesian Islands: molecular evidence for extensive radiation. Proceedings of the National Academy of Sciences USA, 93, 7743-7748.
30. Kim SC, Crawford DJ, Francisco-Ortega J, Santos-Guerra A, Kim MJ (1997) Adaptive radiation and genetic differentiation in the woody Sonchus alliance (Asteraceae: Lactuceae) in the Canary Islands. American Journal of Botany, 84 (Suppl.), 207-208.
31. Lee J, Baldwin BG, Gottlieb LD (2002) Phylogeny of Stephanomeria and related genera (Compositae - Lactuceae) based on analysis of 18S-26S nuclear rDNA ITS and ETS sequences. American Journal of Botany, 89, 160-168.
32. Linder CR, Goertzen LR, Heuvel BV, Francisco-Ortega J, Jansen RK (2000) The complete external transcribed spacer of 18S-26S rDNA: amplification and phylogenetic utility at low taxonomic levels in Asteraceae and closely allied families. Molecular Phylogenetics and Evolution, 14, 285-303.
33. Maddison WP, Maddison DR (1999) MacClade: Analysis of Phylogeny and Character Evolution, Version 3.0.8a. Sinauer Associates, Sunderland, MA.
34. Markos S, Baldwin BG (2001) Higher-level relationships and major lineages of Lessingia (Compositae, Astereae) based on nuclear rDNA internal and external transcribed spacer (ITS and ETS) sequences. Systematic Botany, 26, 168-183.
35. Mason H (1957) A Flora of the Marshes of California, 1st edn. University of California Press, Berkeley.
36. Matthews MA (1997) An Illustrated Field Key to the Flowering Plants of Monterey County, 1st edn. California Native Plant Society, Sacramento.
37. McClintock E, Reeberg P, Knight W (1990) A Flora of the San Bruno Mountains, San Mateo County, California, 1st edn. California Native Plant Society, Sacramento.
38. Moore RJ, Frankton C (1962) Cytotaxonomic studies in the tribe Cynareae (Compositae). Canadian Journal of Botany, 40, 281-293.
39. Munz PA (1973) A California Flora and Supplement, 3rd edn. University of California Press, Berkeley.
40. Munz PA (1974) A Flora of Southern California, 1st edn. University of California Press, Berkeley.
41. Osborn HF (1902) The law of adaptive radiation. American Naturalist, 36, 353-363.
42. Ownbey GB (1968) Cytotaxonomic notes in eleven species of Cirsium native to Mexico. Brittonia, 20, 336-342.
43. Ownbey GB, Raven PH, Kyhos DW (1975) Chromosome numbers in some North American species of the genus Cirsium III: Western United States, Mexico, and Guatamala. Brittonia, 27, 297-304.
44. Petrak F (1917) Die Nordamerikanischen Arter der Gattung. Cirsium Beiheft Botan Centralblatt, 35, 223-567.
45. Raven PH, Axelrod DI (1978) Origin and Relationships of the California Flora, 1st edn. University of California Press, Berkeley.
46. Sanderson MJ, Donoghue MJ (1996) Reconstructing shifts in diversification rates on phylogenetic trees. Trends in Ecology and Evolution, 11, 15-20.
47. Sang T, Crawford DJ, Kim SC, Stuessy TF (1994) Radiation of the endemic genus. Dendroseris (Asteraceae) on the Juan Fernandez Islands: evidence from sequences of the ITS regions of nuclear ribosomal DNA. American Journal of Botany, 81, 1494-1501.
48. Schluter D (2000) The Ecology of Adaptive Radiation, 1st edn. Oxford University Press, New York.
49. Sharsmith HK (1982) Flora of the Mount Hamilton Range of California, 1st edn. California Native Plant Society, Sacramento.
50. Smith CF (1998) A Flora of the Santa Barbara Region, California, 2nd edn. Santa Barbara Botanic Garden and Capra Press, Santa Barbara.
51. Soltis DE, Soltis PS (1998) Choosing an approach and an appropriate gene for phylogenetic analysis. In: Molecular Systematics of Plants II: DNA Sequencing (eds Soltis DE, Soltis PS, Doyle JJ), pp. 1-42. Kluwer Academic Publishers, Boston.
52. Strimmer K, von Haeseler A (1996) Quartet puzzling: a quartet maximum-likelihood method for reconstructing tree topologies. Molecular Biology and Evolution, 13, 964-969.
53. Susanna A, Garcia-Jacas N, Soltis DEPS, Soltis PS (1995) Phylogenetic relationships in tribe Cardueae (Asteraceae) based on ITS sequences. American Journal of Botany, 82, 1056-1068.
54. Swofford DL (2001) PAUP* Phylogenetic Analysis Using Parsimony (*and Other Methods), Version 4.0d64. Sinauer Associates, Sunderland, MA.
55. Thomas JH (1961) Flora of the Santa Cruz Mountains of California, 1st edn. Stanford University Press, Palo Alto.
56. Twisselmann EC (1967) A Flora of Kern County, California. University of San Francisco, San Francisco.
57. Urbatsch LE, Baldwin BG, Donoghue MJ (2000) Phylogeny of the coneflowers and relatives (Heliantheae: Asteraceae) based on nuclear rDNA internal transcribed spacer (ITS) sequences and chloroplast DNA restriction site data. Systematic Botany, 25, 539-565.
58. Vargas P, Baldwin BG, Constance L (1999) A phylogenetic study of Sanicula sect. Sanicoria and sect. Sandwicenses (Apiaceae) based on nuclear rDNA and morphological data. Systematic Botany, 24, 228-248.
59. Volkov R, Kostishin S, Ehrendorfer F, Schweizer D (1996) Molecular organization and evolution of the external transcribed rDNA spacer region in two diploid relatives of Nicotiana tabacum (Solanaceae). Plant Systematics and Evolution, 201, 117-129.
60. White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: PCR Protocols: a Guide to Methods and Applications (eds Innis M, Gelfand D, Sninsky J, White T), pp. 315-322. Academic Press, San Diego.